Yersinia ruckeri strain KMM821 plasmid pYRKMM821_1, complete sequence.
type: Entry
definition: Yersinia ruckeri strain KMM821 plasmid pYRKMM821_1, complete sequence.
sequence version: NZ_CP071803.1
sequence date: 2023-03-25
sequence: sequence
division: CON
label: NZ_CP071803.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN16418414
keyword: RefSeq
source: Yersinia ruckeri
organism: Yersinia ruckeri
taxonomy: Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Yersiniaceae; Yersinia.
reference: 1
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP071803.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: CLC Genomics Workbench v. 20; SPAdes v.\n 3.13.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 96.0x\nSequencing Technology :: Illumina MiSeq; Oxford Nanopore MiniION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/25/2023 04:06:26\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,536\nCDSs (total) :: 3,420\nGenes (coding) :: 3,334\nCDSs (with protein) :: 3,334\nGenes (RNA) :: 116\nrRNAs :: 8, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 8, 7, 7 (5S, 16S, 23S)\ntRNAs :: 82\nncRNAs :: 12\nPseudo Genes (total) :: 86\nCDSs (without protein) :: 86\nPseudo Genes (ambiguous residues) :: 0 of 86\nPseudo Genes (frameshifted) :: 40 of 86\nPseudo Genes (incomplete) :: 58 of 86\nPseudo Genes (internal stop) :: 28 of 86\nPseudo Genes (multiple problems) :: 28 of 86\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 16925
topology: circular
so has quality: SO_0000988
location: 1..16925
location: region:1-16925:1
RO_0002162: 29486

NZ_CP071803
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN16418414
type: BioSample
SIO_000068: biosample

1
title: Direct Submission
author: Voronina, O.L.
author: Kunda, M.S.
author: Aksenova, E.I.
author: Ryzhova, N.
author: Semenov, A.N.
journal: Submitted (12-MAR-2021) Ministry Of Health Of Russia, N.F.Gamaleya National Research Center for Epidemiology and Microbiology, Gamaleya, 18, Moscow 123098, Russia

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16925:1
position: 16925
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-16925:1:source
so part of: sequence
organism: Yersinia ruckeri
mol type: genomic DNA
strain: KMM821
serotype: O1
isolation source: sea water
culture collection: KMM:821
plasmid: pYRKMM821_1
country: Russia:Sea of Okhotsk, near Iturup Island
lat lon: 45.0 N 147.37 E
collection date: 2000

29486
type: Taxonomy
SIO_000068: taxonomy

YR821_RS17085
type: Gene
subclass of: SO_0000704
RO_0002162: 29486
locus tag: YR821_RS17085
old locus tag: YR821_p10001
so part of: sequence
location: 1..627
location: region:1-627:1
so has part: feature:1-627:1:exon
subclass of: SO_0000010

66881240
type: Gene
SIO_000068: ncbigene

position:627:1
position: 627
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-627:1:exon

YR821_RS17085
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29486
locus tag: YR821_RS17085
old locus tag: YR821_p10001
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016928620.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MIIVIGSQKGGVGKSTLAVNIGGYLLEKGHSVMIVDADDQQSVMSWYNDRDEGRQRLPVVSASGNIKNTLFELDKHYDYVIADTAGRDSQELRSGLLAANIFITPIRPSQMDLDTVSHISNVFNTALDYNETAKGYVLLNMCPTNIFVDEAHQAADLLKEYPSLSLVNSRVCDRKIYRDTWGDSVTVQESENTKAKDEIKNLVEEVIL
SIO_010081: YR821_RS17085
subclass of: SO_0000673
so part of: YR821_RS17085
location: 1..627
location: region:1-627:1
so has part: feature:1-627:1:exon

WP_004723272.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-627:1:exon

YR821_RS17090
type: Gene
subclass of: SO_0000704
RO_0002162: 29486
locus tag: YR821_RS17090
old locus tag: YR821_p10002
so part of: sequence
location: 624..911
location: region:624-911:1
so has part: feature:624-911:1:exon
subclass of: SO_0000010

66881241
type: Gene
SIO_000068: ncbigene

position:624:1
position: 624
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:911:1
position: 911
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:624-911:1:exon

YR821_RS17090
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29486
locus tag: YR821_RS17090
old locus tag: YR821_p10002
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004965617.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKNRNIKSESDFINAATSLPKKDSAGNGRKRSYKAISASLTESHIDSLDDVIKSAAVNGHLGITRSDVIKAAIEIFTAQDASEKLSAVLKIKTGE
SIO_010081: YR821_RS17090
subclass of: SO_0000673
so part of: YR821_RS17090
location: 624..911
location: region:624-911:1
so has part: feature:624-911:1:exon

WP_038251376.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:624-911:1:exon

YR821_RS17095
type: Gene
subclass of: SO_0000704
RO_0002162: 29486
locus tag: YR821_RS17095
old locus tag: YR821_p10003
so part of: sequence
location: complement(1172..1378)
location: region:1172-1378:-1
so has part: feature:1172-1378:-1:exon
subclass of: SO_0000010

66881242
type: Gene
SIO_000068: ncbigene

position:1172:-1
position: 1172
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1378:-1
position: 1378
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1172-1378:-1:exon

YR821_RS17095
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29486
locus tag: YR821_RS17095
old locus tag: YR821_p10003
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKDRMDAGLIVGHFSGKWAKWAFVASFIFGLFPAKQYGAESVTLVCIAFLFMMMHIATNKLTIGRWVL
SIO_010081: YR821_RS17095
subclass of: SO_0000673
so part of: YR821_RS17095
location: complement(1172..1378)
location: region:1172-1378:-1
so has part: feature:1172-1378:-1:exon

WP_038251378.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1172-1378:-1:exon

YR821_RS17100
type: Gene
subclass of: SO_0000704
RO_0002162: 29486
locus tag: YR821_RS17100
old locus tag: YR821_p10004
so part of: sequence
location: 2169..3053
location: region:2169-3053:1
so has part: feature:2169-3053:1:exon
subclass of: SO_0000010

66881243
type: Gene
SIO_000068: ncbigene

position:2169:1
position: 2169
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3053:1
position: 3053
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2169-3053:1:exon

YR821_RS17100
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29486
locus tag: YR821_RS17100
old locus tag: YR821_p10004
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001505259.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MAITVGFISEKGGVGKTTSCYHIAEGLSRFHNKKVLVIDADYQRGGITGRFFPQLIENFGKQDPKGTTLFNKYQQLYSATQQTDDINIIKFNLDIDVIPADPRLSTVSTDKLPSTNNIRSNNAILLQHLRTIRLVLDPIEEKYDYILIDSHPEVSDVMRSIIYASDYCVSPVKLDRQSSIGVATVIGEIANVNEDIEMLRNALNVGDPYQDTIFAGAMGMMAREYAEELKQTEQLEYNRLRQAGDIFEYYVTEGDGLRVAAADRVSVYDVQINNAYKQAGQFKNLTNEFMGVCR
SIO_010081: YR821_RS17100
subclass of: SO_0000673
so part of: YR821_RS17100
location: 2169..3053
location: region:2169-3053:1
so has part: feature:2169-3053:1:exon

WP_004723273.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2169-3053:1:exon

YR821_RS17105
type: Gene
subclass of: SO_0000704
RO_0002162: 29486
locus tag: YR821_RS17105
old locus tag: YR821_p10005
so part of: sequence
location: 3050..3451
location: region:3050-3451:1
so has part: feature:3050-3451:1:exon
subclass of: SO_0000010

66881244
type: Gene
SIO_000068: ncbigene

position:3050:1
position: 3050
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3451:1
position: 3451
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3050-3451:1:exon

YR821_RS17105
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29486
locus tag: YR821_RS17105
old locus tag: YR821_p10005
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001505260.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIDIKQLISWLGVDGTKAGLDKSEMTNSELIESFGDLLPKNSAKLKRLEIIDEIIFATRKQSHKTVEELMDMSKEDLSSYFSDQKYSRKELLDLLYTFEIRPGSTAKKNLTEFTISEISEIGMYRRVAKGNHQ
SIO_010081: YR821_RS17105
subclass of: SO_0000673
so part of: YR821_RS17105
location: 3050..3451
location: region:3050-3451:1
so has part: feature:3050-3451:1:exon

WP_038251379.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3050-3451:1:exon

YR821_RS17110
type: Gene
subclass of: SO_0000704
RO_0002162: 29486
locus tag: YR821_RS17110
old locus tag: YR821_p10007
so part of: sequence
location: complement(3939..6917)
location: region:3939-6917:-1
so has part: feature:3939-6917:-1:exon
subclass of: SO_0000010

66881245
type: Gene
SIO_000068: ncbigene

position:3939:-1
position: 3939
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6917:-1
position: 6917
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3939-6917:-1:exon

YR821_RS17110
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29486
locus tag: YR821_RS17110
old locus tag: YR821_p10007
inference: COORDINATES: protein motif:HMM:NF033527.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Tn3 family transposase
translation: MQPQDTAYPRFKSRLTPSELERFYTPTEDELAFCVTAARSPTTRMGFVILLKTFQRLGYFVLSSQVPEPIIKHIAQSIGRNADLKNLHRYDQSEARRKHVGTIRRFLDVNPFSITGKALLLNTFRDAALIKEDVADIINVGIEVLIRHRYELPAFDSLVRAARSTRAEANQALYSRVQVAVGEEGETFLDTLFIVGDDPRRVSKWNDLKQDPARPTVYGMRDLLARFALLTDLAGYNHAIKTIPVVKVSQWALEGNSLDAASMADLAPAKRYAITLAVIRQRLGVVTDDLCDIFCKQMNKVSRAAEAELQQYLNDNQGKTDEILRRYALLNAVLDSAESEDNQLKIIRETVSSRPDLCEFSRFHIEFGGKNECRFMLKTFSQRRAELLRILSTLNFASTSQDTSFERALTLMLSQRRCRGEWIMLKNGAETVLSLSDLSWVPDKWWKLITGDQQRRAPEQISRRQFEVCVCTQMVRELKSGDLCVIGANVYADYRDELVPLDECAETRETYSQEVGLPLETIPFVDHVRDLLTAAAQKADDFYPDNAFFQIINGKPRLAKLKKKPVPDGFKALNIAVGKKLDKLGLSLLDIIADTTQWLHWDKHIGPLSGHQGKLKKSTRRKIITAFAYGTGLGPMQTSRTIADISARQISFVDQRQVTTEKLEAATFDTINGYNKFQLPQYWGDTKRAAADGTQWDLYENNLLSERHIRYGGYGGIAYYHVSDTYIALFSHFIPCGAWEAIYILDGLTKNQSDIQPDILHGDTQAQSAPVYGLAFLLGIKLMPRVRNWKDLKWFKASPYEIYQHIEALFSKDIIDWELISCHLPDMLQVAQSIRAGRLSPSTILRKLGTASRKNKLYFAFRELGRVIRTLFLLEYIGDEELRRIIHAAQNKCEGFNQFTQWVHFGADKITDNVRDEQLKVIKYNHLVANLVIFHNCQTLTQALKELEAEGMMLTPELLAGLSPYRTHHINRFGLSEVKERYPVPASYDIKF
SIO_010081: YR821_RS17110
subclass of: SO_0000673
so part of: YR821_RS17110
location: complement(3939..6917)
location: region:3939-6917:-1
so has part: feature:3939-6917:-1:exon

WP_004723380.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3939-6917:-1:exon

YR821_RS17115
type: Gene
subclass of: SO_0000704
RO_0002162: 29486
locus tag: YR821_RS17115
old locus tag: YR821_p10008
so part of: sequence
location: 7038..7688
location: region:7038-7688:1
so has part: feature:7038-7688:1:exon
subclass of: SO_0000010

66881246
type: Gene
SIO_000068: ncbigene

position:7038:1
position: 7038
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7688:1
position: 7688
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7038-7688:1:exon

YR821_RS17115
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29486
locus tag: YR821_RS17115
old locus tag: YR821_p10008
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015197255.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MGQIAAIYCRVSTSDQDCQRQETELIALASKAGYSVAGIWKETASGSKTDRQQRQQVLKLAQARKIDLILVTELTRWSRSTLDLFHTLNDLQSWGVGLIAQTGLQFDLSTPQGKLIATLMSGFAEFERDLLRERVRSGVQAAQARGVVFGRKPGQRIKSDKLAPKVLALVAEGQSYRQIGRHLDLSKNTVLGIVKRERKKQVNEMDSTNTDGYETQ
SIO_010081: YR821_RS17115
subclass of: SO_0000673
so part of: YR821_RS17115
location: 7038..7688
location: region:7038-7688:1
so has part: feature:7038-7688:1:exon

WP_040155137.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7038-7688:1:exon

YR821_RS17120
type: Gene
subclass of: SO_0000704
RO_0002162: 29486
locus tag: YR821_RS17120
old locus tag: YR821_p10009
so part of: sequence
location: complement(7818..8087)
location: region:7818-8087:-1
so has part: feature:7818-8087:-1:exon
subclass of: SO_0000010

66881247
type: Gene
SIO_000068: ncbigene

position:7818:-1
position: 7818
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8087:-1
position: 8087
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7818-8087:-1:exon

YR821_RS17120
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29486
locus tag: YR821_RS17120
old locus tag: YR821_p10009
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAVFNFTQLDSLIQMRVLFPELTDKQFKLSFMWAWGMDLSSLAETNESSVDAVKKNLQRSRTAMGLEHAETMRSTILLRVFVGLWENRK
SIO_010081: YR821_RS17120
subclass of: SO_0000673
so part of: YR821_RS17120
location: complement(7818..8087)
location: region:7818-8087:-1
so has part: feature:7818-8087:-1:exon

WP_038251368.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7818-8087:-1:exon

YR821_RS17125
type: Gene
subclass of: SO_0000704
RO_0002162: 29486
locus tag: YR821_RS17125
old locus tag: YR821_p10010
so part of: sequence
location: complement(8183..8986)
location: region:8183-8986:-1
so has part: feature:8183-8986:-1:exon
subclass of: SO_0000010

66881248
type: Gene
SIO_000068: ncbigene

position:8183:-1
position: 8183
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8986:-1
position: 8986
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8183-8986:-1:exon

YR821_RS17125
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29486
locus tag: YR821_RS17125
old locus tag: YR821_p10010
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001423348.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein
translation: MKVSETTKIRHRHEINATFSKMALAAKRVLFMAIAQVDSKQLIERGQTFVVSANDYASIANVDISVAYKQLKDAGEELQGMTLEIPKSELLPPFQRAGEPLIWKKPVGNGVRLLNLTEYIDYEAGDGFIEINFTRQMEPYICRLKDGYTTQVLLSAVRLSDPNASNLYQLIRKKISSGMIKYFDITIDQLKDELNLFKLDTETTEKIYLYPEFKDFNKAVIKKSLLSIEKLTELGKLNAEVIEKRNRKAYAVRISYSIKDFGTLAVE
SIO_010081: YR821_RS17125
subclass of: SO_0000673
so part of: YR821_RS17125
location: complement(8183..8986)
location: region:8183-8986:-1
so has part: feature:8183-8986:-1:exon

WP_004723260.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8183-8986:-1:exon

YR821_RS17130
type: Gene
subclass of: SO_0000704
RO_0002162: 29486
locus tag: YR821_RS17130
old locus tag: YR821_p10013
so part of: sequence
location: 10210..10452
location: region:10210-10452:1
so has part: feature:10210-10452:1:exon
subclass of: SO_0000010

66881249
type: Gene
SIO_000068: ncbigene

position:10210:1
position: 10210
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10452:1
position: 10452
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10210-10452:1:exon

YR821_RS17130
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29486
locus tag: YR821_RS17130
old locus tag: YR821_p10013
inference: COORDINATES: similar to AA sequence:RefSeq:NP_308488.1
GO process: GO:0051983 - regulation of chromosome segregation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system ParD family antitoxin
translation: MARTTSVTIGEQLDSFINRLIDSGRYGSASEVMRSALRLLEQQETNDEVIRQAVIAGLESGESSLSLRDIAAQRKLRHRV
SIO_010081: YR821_RS17130
subclass of: SO_0000673
so part of: YR821_RS17130
location: 10210..10452
location: region:10210-10452:1
so has part: feature:10210-10452:1:exon

WP_038251370.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10210-10452:1:exon

YR821_RS17135
type: Gene
subclass of: SO_0000704
RO_0002162: 29486
locus tag: YR821_RS17135
old locus tag: YR821_p10014
so part of: sequence
location: 10445..10729
location: region:10445-10729:1
so has part: feature:10445-10729:1:exon
subclass of: SO_0000010

66881250
type: Gene
SIO_000068: ncbigene

position:10445:1
position: 10445
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10729:1
position: 10729
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10445-10729:1:exon

YR821_RS17135
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29486
locus tag: YR821_RS17135
old locus tag: YR821_p10014
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000277490.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelE/ParE family toxin
translation: MYKLTERAAEDFAGIYDYTLLKFGEAQADHYTDALEAFFETLAGMPDMGRDYHAVPGVMRIEFQRHTIFYTVRDTDILIARILHQQMNHKRHLL
SIO_010081: YR821_RS17135
subclass of: SO_0000673
so part of: YR821_RS17135
location: 10445..10729
location: region:10445-10729:1
so has part: feature:10445-10729:1:exon

WP_038251372.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10445-10729:1:exon

YR821_RS17140
type: Gene
subclass of: SO_0000704
RO_0002162: 29486
locus tag: YR821_RS17140
old locus tag: YR821_p10015
so part of: sequence
location: complement(10934..11821)
location: region:10934-11821:-1
so has part: feature:10934-11821:-1:exon
subclass of: SO_0000010

66881251
type: Gene
SIO_000068: ncbigene

position:10934:-1
position: 10934
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11821:-1
position: 11821
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10934-11821:-1:exon

YR821_RS17140
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29486
locus tag: YR821_RS17140
old locus tag: YR821_p10015
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNFQFFLEKNQELAIRLSFIDFKIFYTGVLSRSDLMEEFGVSEITASRIISEYKEIRADNLYYNQSEKKFFLNLKDFIPFVELKAEDALFMLANGFDKNRIIKNKGFIKFERIGVNTNPICNKKVSAITRAIFQGLMISCIYNSAAGRDLSERSIVPLVILFDGINWIFRANHPGANGNVKYKNFNFSRIISVNDDGVKVGREYGLDYDELWNGVVPLDIEIKSDLDKDAKERVRRDYGMADNEDKILMTERAAFVWIMLNQWKIRYSGNKDFLQDNYLLELKNEEMLKKYGAIP
SIO_010081: YR821_RS17140
subclass of: SO_0000673
so part of: YR821_RS17140
location: complement(10934..11821)
location: region:10934-11821:-1
so has part: feature:10934-11821:-1:exon

WP_049688246.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10934-11821:-1:exon

YR821_RS17145
type: Gene
subclass of: SO_0000704
RO_0002162: 29486
locus tag: YR821_RS17145
old locus tag: YR821_p10016
so part of: sequence
location: 11998..12168
location: region:11998-12168:1
so has part: feature:11998-12168:1:exon
subclass of: SO_0000010

66881252
type: Gene
SIO_000068: ncbigene

position:11998:1
position: 11998
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12168:1
position: 12168
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11998-12168:1:exon

YR821_RS17145
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29486
locus tag: YR821_RS17145
old locus tag: YR821_p10016
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013073381.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MATNPPKDNSRIGMVRQRSQTFNPVTDTWVKRDTETGRFMDVKSDGTPFKGVRKEK
SIO_010081: YR821_RS17145
subclass of: SO_0000673
so part of: YR821_RS17145
location: 11998..12168
location: region:11998-12168:1
so has part: feature:11998-12168:1:exon

WP_169309805.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11998-12168:1:exon

YR821_RS17155
type: Gene
subclass of: SO_0000704
RO_0002162: 29486
locus tag: YR821_RS17155
old locus tag: YR821_p10018
so part of: sequence
location: 12619..13281
location: region:12619-13281:1
so has part: feature:12619-13281:1:exon
subclass of: SO_0000010

66881254
type: Gene
SIO_000068: ncbigene

position:12619:1
position: 12619
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13281:1
position: 13281
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12619-13281:1:exon

YR821_RS17155
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29486
locus tag: YR821_RS17155
old locus tag: YR821_p10018
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKSLVLFGSKARHDSDAGSDIDLLGIYDGEKIKSIAHESVHLFLYPEETILEKMTSGDLFALHLKEESIPLYGEDLISDIFSKFEYKKNYDYEISKAIFLVSEIAISYDRIKNKKKANKKISWCTRTAIIALSAENREPVFSKRKIASYLEIPGVSASDIEILINIKNFSKKIPEKYIEKIFLFSMHFDYIYKDYNRLLNDPFIKKSISDLADKKSSDGY
SIO_010081: YR821_RS17155
subclass of: SO_0000673
so part of: YR821_RS17155
location: 12619..13281
location: region:12619-13281:1
so has part: feature:12619-13281:1:exon

WP_038251374.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12619-13281:1:exon

YR821_RS17160
type: Gene
subclass of: SO_0000704
RO_0002162: 29486
locus tag: YR821_RS17160
so part of: sequence
location: complement(13539..13703)
location: region:13539-13703:-1
so has part: feature:13539-13703:-1:exon
subclass of: SO_0000010

66881255
type: Gene
SIO_000068: ncbigene

position:13539:-1
position: 13539
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13703:-1
position: 13703
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13539-13703:-1:exon

YR821_RS17160
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29486
locus tag: YR821_RS17160
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLIKIRVFNELQEEVIFYQTEIDPVAMIDIARSREDMVREKGKAFAQGARAAAH
SIO_010081: YR821_RS17160
subclass of: SO_0000673
so part of: YR821_RS17160
location: complement(13539..13703)
location: region:13539-13703:-1
so has part: feature:13539-13703:-1:exon

WP_004723268.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13539-13703:-1:exon

YR821_RS17165
type: Gene
subclass of: SO_0000704
RO_0002162: 29486
locus tag: YR821_RS17165
pseudo: true
so part of: sequence
location: complement(13730..>13879)
location: region:13730-13879:-1
so has part: feature:13730-13879:-1:exon
subclass of: SO_0000010

66881256
type: Gene
SIO_000068: ncbigene

position:13730:-1
position: 13730
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13879:-1
position: 13879
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13730-13879:-1:exon

YR821_RS17165
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29486
locus tag: YR821_RS17165
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005540827.1
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: transcriptional regulator
SIO_010081: YR821_RS17165
subclass of: SO_0000673
so part of: YR821_RS17165
location: complement(13730..>13879)
location: region:13730-13879:-1
so has part: feature:13730-13879:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:13730-13879:-1:exon

YR821_RS17170
type: Gene
subclass of: SO_0000704
RO_0002162: 29486
locus tag: YR821_RS17170
old locus tag: YR821_p10020
so part of: sequence
location: 14059..14700
location: region:14059-14700:1
so has part: feature:14059-14700:1:exon
subclass of: SO_0000010

66881257
type: Gene
SIO_000068: ncbigene

position:14059:1
position: 14059
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14700:1
position: 14700
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14059-14700:1:exon

YR821_RS17170
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29486
locus tag: YR821_RS17170
old locus tag: YR821_p10020
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001722340.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MFIRAYLRASTEDQFADRAKEMLEQFVLERGHKIASYYRENISGTKLDRPELGRLLMDSHHNDILLVEQIDRLTRLSHSDWMTLKKQIEQHELRIVSLDVPTSWQALSEKDPSQADPITRAVITAINNMLIDLMAAMSHKDWLSRRQRQKQGIERAHTLGKYRGKQADQERHQKVLYYRQIKKLSIRETADATGYSASQVCRIQALYKEVGPD
SIO_010081: YR821_RS17170
subclass of: SO_0000673
so part of: YR821_RS17170
location: 14059..14700
location: region:14059-14700:1
so has part: feature:14059-14700:1:exon

WP_004723269.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14059-14700:1:exon

YR821_RS17175
type: Gene
subclass of: SO_0000704
RO_0002162: 29486
locus tag: YR821_RS17175
old locus tag: YR821_p10021
so part of: sequence
location: 14956..15642
location: region:14956-15642:1
so has part: feature:14956-15642:1:exon
subclass of: SO_0000010

66881258
type: Gene
SIO_000068: ncbigene

position:14956:1
position: 14956
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15642:1
position: 15642
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14956-15642:1:exon

YR821_RS17175
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29486
locus tag: YR821_RS17175
old locus tag: YR821_p10021
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004193995.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTTVHEKQRNKTADAENKINVLAAERFRDIVTDYAGSIGTGVTPISIESMGKTDPVFVLEMLNSIFKDKALNALTPEKKKLFRRQYSKAIFLNTLREHGGVLSSAEVAKEIGKSKVTVKTRKDNNKLLALNLDGEFFYPVFQFVKEKEKENSNSSVLKGMDELIPLLQNFSDRMKYSFFMKKRNTTLDGLNPKGREFTVAQLLKEKPNEIVMNELKRLARLEGTQDPA
SIO_010081: YR821_RS17175
subclass of: SO_0000673
so part of: YR821_RS17175
location: 14956..15642
location: region:14956-15642:1
so has part: feature:14956-15642:1:exon

WP_004723270.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14956-15642:1:exon

YR821_RS17180
type: Gene
subclass of: SO_0000704
RO_0002162: 29486
locus tag: YR821_RS17180
old locus tag: YR821_p10022
so part of: sequence
location: complement(15669..16355)
location: region:15669-16355:-1
so has part: feature:15669-16355:-1:exon
subclass of: SO_0000010

66881259
type: Gene
SIO_000068: ncbigene

position:15669:-1
position: 15669
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16355:-1
position: 16355
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15669-16355:-1:exon

YR821_RS17180
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29486
locus tag: YR821_RS17180
old locus tag: YR821_p10022
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017891069.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: RES family NAD+ phosphorylase
translation: MSFEENQNDEVINAVPEDSNAEKLDEHDILALAKIEALTDSTFQECSSVLPAETTTNRLQFGLHGGSSVFFNNVGSDTRFCVPGGKTGTIYLAKDPLTAMKEVLQNTLSMTESDLDNYIMADVVTLKDLKVVQSSALLAQTSIKLHDLTTSSRSVTQKLAEKAHAAGMDGIEFVSNVTAQTCYAIWHNDPSGDGIATTASQTSLSKLTINGEEAADVLVYKLKIPVEE
SIO_010081: YR821_RS17180
subclass of: SO_0000673
so part of: YR821_RS17180
location: complement(15669..16355)
location: region:15669-16355:-1
so has part: feature:15669-16355:-1:exon

WP_004723271.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15669-16355:-1:exon