Yersinia ruckeri strain KMM821 plasmid pYRKMM821_1, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Yersiniaceae; Yersinia.
Submitted (12-MAR-2021) Ministry Of Health Of Russia, N.F.Gamaleya National Research Center for Epidemiology and Microbiology, Gamaleya, 18, Moscow 123098, Russia
REFSEQ INFORMATION: The reference sequence is identical to\nCP071803.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: CLC Genomics Workbench v. 20; SPAdes v.\n 3.13.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 96.0x\nSequencing Technology :: Illumina MiSeq; Oxford Nanopore MiniION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/25/2023 04:06:26\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,536\nCDSs (total) :: 3,420\nGenes (coding) :: 3,334\nCDSs (with protein) :: 3,334\nGenes (RNA) :: 116\nrRNAs :: 8, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 8, 7, 7 (5S, 16S, 23S)\ntRNAs :: 82\nncRNAs :: 12\nPseudo Genes (total) :: 86\nCDSs (without protein) :: 86\nPseudo Genes (ambiguous residues) :: 0 of 86\nPseudo Genes (frameshifted) :: 40 of 86\nPseudo Genes (incomplete) :: 58 of 86\nPseudo Genes (internal stop) :: 28 of 86\nPseudo Genes (multiple problems) :: 28 of 86\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
Russia:Sea of Okhotsk, near Iturup Island
COORDINATES: similar to AA sequence:RefSeq:WP_016928620.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004965617.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_001505259.1
COORDINATES: similar to AA sequence:RefSeq:WP_001505260.1
COORDINATES: protein motif:HMM:NF033527.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015197255.1
COORDINATES: similar to AA sequence:RefSeq:WP_001423348.1
COORDINATES: similar to AA sequence:RefSeq:NP_308488.1
GO:0051983 - regulation of chromosome segregation [Evidence IEA]
type II toxin-antitoxin system ParD family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_000277490.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_013073381.1
COORDINATES: similar to AA sequence:RefSeq:WP_005540827.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_001722340.1
COORDINATES: similar to AA sequence:RefSeq:WP_004193995.1
COORDINATES: similar to AA sequence:RefSeq:WP_017891069.1