Pectobacterium atrosepticum strain 21A plasmid pPA21A, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Pectobacteriaceae; Pectobacterium.
Genome Sequence of Pectobacterium atrosepticum Strain 21A
Submitted (04-AUG-2014) Department of Molecular Biology, Belarus State University, 4 Nezaliezhnasci Ave., Minsk 220030, Belarus
REFSEQ INFORMATION: The reference sequence is identical to\nCP009126.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SPAdes v. 3.0\nAssembly Name :: Pat21A_v1.0\nGenome Coverage :: 268x\nSequencing Technology :: Illumina MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/12/2023 14:59:29\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,547\nCDSs (total) :: 4,439\nGenes (coding) :: 4,377\nCDSs (with protein) :: 4,377\nGenes (RNA) :: 108\nrRNAs :: 8, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 8, 7, 7 (5S, 16S, 23S)\ntRNAs :: 77\nncRNAs :: 9\nPseudo Genes (total) :: 62\nCDSs (without protein) :: 62\nPseudo Genes (ambiguous residues) :: 0 of 62\nPseudo Genes (frameshifted) :: 25 of 62\nPseudo Genes (incomplete) :: 45 of 62\nPseudo Genes (internal stop) :: 10 of 62\nPseudo Genes (multiple problems) :: 15 of 62\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_006122469.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
GO:0009307 - DNA restriction-modification system [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_002353177.1
COORDINATES: similar to AA sequence:RefSeq:WP_002353182.1
COORDINATES: similar to AA sequence:RefSeq:WP_000277490.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:NP_308488.1
GO:0051983 - regulation of chromosome segregation [Evidence IEA]
type II toxin-antitoxin system ParD family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_008815934.1
COORDINATES: similar to AA sequence:RefSeq:WP_008815933.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_016361119.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
transcription termination/antitermination NusG family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008815931.1
COORDINATES: similar to AA sequence:RefSeq:WP_008815930.1
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012885319.1
COORDINATES: similar to AA sequence:RefSeq:WP_001096399.1
VirB3 family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_000770034.1
COORDINATES: protein motif:HMM:NF033894.1
COORDINATES: similar to AA sequence:RefSeq:WP_005967108.1
COORDINATES: similar to AA sequence:RefSeq:WP_010286993.1
COORDINATES: similar to AA sequence:RefSeq:WP_009635184.1
P-type conjugative transfer protein VirB9
COORDINATES: similar to AA sequence:RefSeq:WP_015689806.1
VirB10/TraB/TrbI family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_002668618.1
GO:0043684 - type IV secretion system complex [Evidence IEA]
GO:0044097 - secretion by the type IV secretion system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011998918.1
cag pathogenicity island Cag12 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_000754361.1
COORDINATES: similar to AA sequence:RefSeq:WP_011191426.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]
GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: protein motif:HMM:NF013014.2
H-NS family nucleoid-associated regulatory protein
COORDINATES: similar to AA sequence:RefSeq:WP_017459225.1
TraM recognition domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009113441.1
MobC family replication-relaxation protein
COORDINATES: similar to AA sequence:RefSeq:WP_004170855.1
COORDINATES: similar to AA sequence:RefSeq:WP_016235141.1
COORDINATES: similar to AA sequence:RefSeq:WP_000178515.1
zincin-like metallopeptidase domain-containing protein
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_012442908.1
COORDINATES: similar to AA sequence:RefSeq:YP_005227789.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF025324.2
type III toxin-antitoxin system ToxN/AbiQ family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_006122497.1