Pectobacterium atrosepticum strain 21A plasmid pPA21A, complete sequence.
type: Entry
definition: Pectobacterium atrosepticum strain 21A plasmid pPA21A, complete sequence.
sequence version: NZ_CP009126.1
sequence date: 2023-03-12
sequence: sequence
division: CON
label: NZ_CP009126.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN02983234
keyword: RefSeq
source: Pectobacterium atrosepticum
organism: Pectobacterium atrosepticum
taxonomy: Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Pectobacteriaceae; Pectobacterium.
reference: 1
references: 25237028
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP009126.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SPAdes v. 3.0\nAssembly Name :: Pat21A_v1.0\nGenome Coverage :: 268x\nSequencing Technology :: Illumina MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/12/2023 14:59:29\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,547\nCDSs (total) :: 4,439\nGenes (coding) :: 4,377\nCDSs (with protein) :: 4,377\nGenes (RNA) :: 108\nrRNAs :: 8, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 8, 7, 7 (5S, 16S, 23S)\ntRNAs :: 77\nncRNAs :: 9\nPseudo Genes (total) :: 62\nCDSs (without protein) :: 62\nPseudo Genes (ambiguous residues) :: 0 of 62\nPseudo Genes (frameshifted) :: 25 of 62\nPseudo Genes (incomplete) :: 45 of 62\nPseudo Genes (internal stop) :: 10 of 62\nPseudo Genes (multiple problems) :: 15 of 62\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 32444
topology: circular
so has quality: SO_0000988
location: 1..32444
location: region:1-32444:1
RO_0002162: 29471

NZ_CP009126
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN02983234
type: BioSample
SIO_000068: biosample

1
title: Genome Sequence of Pectobacterium atrosepticum Strain 21A
author: Nikolaichik, Y.
author: Gorshkov, V.
author: Gogolev, Y.
author: Valentovich, L.
author: Evtushenkov, A.
journal: Genome Announc 2 (5), e00935-14 (2014)
pubmed: 25237028
comments: Publication Status: Online-Only

25237028
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Nikolaichik, Y.
journal: Submitted (04-AUG-2014) Department of Molecular Biology, Belarus State University, 4 Nezaliezhnasci Ave., Minsk 220030, Belarus

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32444:1
position: 32444
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-32444:1:source
so part of: sequence
organism: Pectobacterium atrosepticum
mol type: genomic DNA
strain: 21A
isolation source: potato stems
host: Solanum tuberosum
plasmid: pPA21A
country: Belarus
collection date: 1978
collected by: Anatoli Evtushenkov

29471
type: Taxonomy
SIO_000068: taxonomy

GZ59_RS22475
type: Gene
subclass of: SO_0000704
RO_0002162: 29471
locus tag: GZ59_RS22475
so part of: sequence
location: complement(join(32046..32444,1..474))
location: region:1-32444:-1
so has part: feature:1-474:-1:exon
so has part: feature:32046-32444:-1:exon
subclass of: SO_0000010

57211255
type: Gene
SIO_000068: ncbigene

position:1:-1
position: 1
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:32444:-1
position: 32444
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-474:-1:exon

position:474:-1
position: 474
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:32046-32444:-1:exon

position:32046:-1
position: 32046
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

GZ59_RS22475
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29471
locus tag: GZ59_RS22475
EC number: 3.1.21.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006122469.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
GO process: GO:0009307 - DNA restriction-modification system [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: restriction endonuclease
translation: MKFTPLDLKNFNQLFEDKINAGYVLDFSNKTMREFFESELSIDIDNDIYRKDGDSKLKRLRSLIKQADRETVLRVVTRLWEYRKSIPDGIITAQDDAVYGSFVAKIQGADSQTASGIAPALIVPTGIDNDYFLKGLEALHNQQPHQRGHSFELWLNELFAAFYLSPKGAFRLKGEQIDGSFLLNNDTYLVEAKWHSAKTGNADLHAFHGKLDQKISWARGVFISWAGFTRSGLDAWGRGKKVICVSGYDLVLMLKNNISFRMLMEEKIRRAAETGNLYVKIDEIYPNINK
SIO_010081: GZ59_RS22475
subclass of: SO_0000673
so part of: GZ59_RS22475
location: complement(join(32046..32444,1..474))
location: region:1-32444:-1
so has part: feature:1-474:-1:exon
so has part: feature:32046-32444:-1:exon

WP_051918080.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-474:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:32046-32444:-1:exon

GZ59_RS22215
type: Gene
subclass of: SO_0000704
RO_0002162: 29471
locus tag: GZ59_RS22215
old locus tag: GZ59_46210
so part of: sequence
location: complement(659..904)
location: region:659-904:-1
so has part: feature:659-904:-1:exon
subclass of: SO_0000010

57211208
type: Gene
SIO_000068: ncbigene

position:659:-1
position: 659
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:904:-1
position: 904
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:659-904:-1:exon

GZ59_RS22215
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29471
locus tag: GZ59_RS22215
old locus tag: GZ59_46210
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002353177.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKNKKSLFDVASTVGNDALLQVAEQQPEATTRAVRTKTLKAIPETFFAAHKKLRDTNKTNLDFSNYIMEALREKLERDGAI
SIO_010081: GZ59_RS22215
subclass of: SO_0000673
so part of: GZ59_RS22215
location: complement(659..904)
location: region:659-904:-1
so has part: feature:659-904:-1:exon

WP_040118333.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:659-904:-1:exon

GZ59_RS22220
type: Gene
subclass of: SO_0000704
RO_0002162: 29471
locus tag: GZ59_RS22220
old locus tag: GZ59_46220
so part of: sequence
location: complement(987..1640)
location: region:987-1640:-1
so has part: feature:987-1640:-1:exon
subclass of: SO_0000010

57211209
type: Gene
SIO_000068: ncbigene

position:987:-1
position: 987
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1640:-1
position: 1640
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:987-1640:-1:exon

GZ59_RS22220
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29471
locus tag: GZ59_RS22220
old locus tag: GZ59_46220
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002353182.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: division plane positioning ATPase MipZ
translation: MPIYAISHHKGGAGKTTSTVHIVGELKPDITIDLDIHEGVSVINQLRPDDKKWNVLAINNKEKLISVLRELDDQGKTVVIDCGGFDADINRVAVAVADVVIVPANDTVTEQIGLAKFDKVLAEISKQMNVELNAKIMFCKTEPNQKHFPDMEDTLKKVKHMSLLNSRLSYRRGRYGFTQSLRQGMGITEIKHGRASAAGKEVVALVKELRELVENGK
SIO_010081: GZ59_RS22220
subclass of: SO_0000673
so part of: GZ59_RS22220
location: complement(987..1640)
location: region:987-1640:-1
so has part: feature:987-1640:-1:exon

WP_040118334.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:987-1640:-1:exon

GZ59_RS22225
type: Gene
subclass of: SO_0000704
RO_0002162: 29471
locus tag: GZ59_RS22225
old locus tag: GZ59_46230
so part of: sequence
location: complement(2038..2322)
location: region:2038-2322:-1
so has part: feature:2038-2322:-1:exon
subclass of: SO_0000010

57211210
type: Gene
SIO_000068: ncbigene

position:2038:-1
position: 2038
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2322:-1
position: 2322
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2038-2322:-1:exon

GZ59_RS22225
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29471
locus tag: GZ59_RS22225
old locus tag: GZ59_46230
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000277490.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelE/ParE family toxin
translation: MYKLTERAADDFAGIYDYTLLKFGEAQADHYTDALEAFFETLAGMPDMGRDYHAVPGVMRIEFQRHAIFYTVRDTDILIARILHQQMNHKRHLL
SIO_010081: GZ59_RS22225
subclass of: SO_0000673
so part of: GZ59_RS22225
location: complement(2038..2322)
location: region:2038-2322:-1
so has part: feature:2038-2322:-1:exon

WP_040118335.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2038-2322:-1:exon

GZ59_RS22230
type: Gene
subclass of: SO_0000704
RO_0002162: 29471
locus tag: GZ59_RS22230
old locus tag: GZ59_46240
so part of: sequence
location: complement(2315..2557)
location: region:2315-2557:-1
so has part: feature:2315-2557:-1:exon
subclass of: SO_0000010

57211211
type: Gene
SIO_000068: ncbigene

position:2315:-1
position: 2315
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2557:-1
position: 2557
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2315-2557:-1:exon

GZ59_RS22230
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29471
locus tag: GZ59_RS22230
old locus tag: GZ59_46240
inference: COORDINATES: similar to AA sequence:RefSeq:NP_308488.1
GO process: GO:0051983 - regulation of chromosome segregation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system ParD family antitoxin
translation: MARTTSVTIGEQLDSFISRLIDSGRYGSASEVMRSALRLLEQQETNDEVVRQAVIAGLESGESSLSLRDIAAQRKLRHRV
SIO_010081: GZ59_RS22230
subclass of: SO_0000673
so part of: GZ59_RS22230
location: complement(2315..2557)
location: region:2315-2557:-1
so has part: feature:2315-2557:-1:exon

WP_008815935.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2315-2557:-1:exon

GZ59_RS22235
type: Gene
subclass of: SO_0000704
RO_0002162: 29471
gene: repA
locus tag: GZ59_RS22235
old locus tag: GZ59_46250
so part of: sequence
location: complement(3130..4047)
location: region:3130-4047:-1
so has part: feature:3130-4047:-1:exon
subclass of: SO_0000010

57211212
type: Gene
SIO_000068: ncbigene

position:3130:-1
position: 3130
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4047:-1
position: 4047
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3130-4047:-1:exon

GZ59_RS22235
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29471
gene: repA
locus tag: GZ59_RS22235
old locus tag: GZ59_46250
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008815934.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid replication initiator RepA
translation: MGNQTKSSQENPDKRHRGEHSTACKCPLPLYVRPAHYKPLSKQHGRALRNLMSQDKTSGAWVIRRRVSADPIFTFLRPVADRKRAFREVRRRLLDALFVLFVNKADLATGIVTINITKLAEELSPRNEDGQIIPETAVTVSRVSRLIDELARFGIVLAPETEWDYVNGCRFPKHIIITEEGWRLTGVDMDKLRAEQEERLRAIEDGILQPGEAMTVKEARKRWYERCRHQTILSRRTRAIEGKQRRKLAELPFDERKRQVAERIFRDMKGDIHHLTPQQFEKMVWTQLYQLELVNMEQPGTAPPH
SIO_010081: GZ59_RS22235
subclass of: SO_0000673
so part of: GZ59_RS22235
location: complement(3130..4047)
location: region:3130-4047:-1
so has part: feature:3130-4047:-1:exon

WP_050880439.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3130-4047:-1:exon

GZ59_RS22240
type: Gene
subclass of: SO_0000704
RO_0002162: 29471
locus tag: GZ59_RS22240
old locus tag: GZ59_46270
so part of: sequence
location: complement(4555..4917)
location: region:4555-4917:-1
so has part: feature:4555-4917:-1:exon
subclass of: SO_0000010

57211213
type: Gene
SIO_000068: ncbigene

position:4555:-1
position: 4555
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4917:-1
position: 4917
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4555-4917:-1:exon

GZ59_RS22240
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29471
locus tag: GZ59_RS22240
old locus tag: GZ59_46270
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008815933.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix transcriptional regulator
translation: MVPKRLKEARELAGLSQEKLAQLVEIESVNSRSRISNYEAGRFTPPFDFILRVAKVLGYPEYYFYTVDDEVAKNILENHRKVMNCNDNPLNHILVENKKLREQRDEVRRLLSQFNDCMKD
SIO_010081: GZ59_RS22240
subclass of: SO_0000673
so part of: GZ59_RS22240
location: complement(4555..4917)
location: region:4555-4917:-1
so has part: feature:4555-4917:-1:exon

WP_040118336.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4555-4917:-1:exon

GZ59_RS22245
type: Gene
subclass of: SO_0000704
RO_0002162: 29471
locus tag: GZ59_RS22245
old locus tag: GZ59_46280
so part of: sequence
location: 5188..5643
location: region:5188-5643:1
so has part: feature:5188-5643:1:exon
subclass of: SO_0000010

57211214
type: Gene
SIO_000068: ncbigene

position:5188:1
position: 5188
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5643:1
position: 5643
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5188-5643:1:exon

GZ59_RS22245
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29471
locus tag: GZ59_RS22245
old locus tag: GZ59_46280
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016361119.1
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: transcription termination/antitermination NusG family protein
translation: MNLWYVLYCKTQDVDKITKRVKSLGVSVFCPRYVRVSHRTDCNSVRIDEKVLFPNYLFLSFDINKIHTSTISSIPGAIGFIRFGSDACTVPQKVISAIECARLIALNNDDQAIECRNISPALLLKIQEISLIRSIEQRQVAFSHLLQSSNL
SIO_010081: GZ59_RS22245
subclass of: SO_0000673
so part of: GZ59_RS22245
location: 5188..5643
location: region:5188-5643:1
so has part: feature:5188-5643:1:exon

WP_040118337.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5188-5643:1:exon

GZ59_RS22250
type: Gene
subclass of: SO_0000704
RO_0002162: 29471
locus tag: GZ59_RS22250
old locus tag: GZ59_46290
so part of: sequence
location: 5723..5947
location: region:5723-5947:1
so has part: feature:5723-5947:1:exon
subclass of: SO_0000010

57211215
type: Gene
SIO_000068: ncbigene

position:5723:1
position: 5723
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5947:1
position: 5947
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5723-5947:1:exon

GZ59_RS22250
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29471
locus tag: GZ59_RS22250
old locus tag: GZ59_46290
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008815931.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPKKKLGEPTSTAVIYIGQQRYQLLAKHAREISYLSNTNIKTTTFLHYLIDEFTKKGHASLLNQLQKAPPTEEE
SIO_010081: GZ59_RS22250
subclass of: SO_0000673
so part of: GZ59_RS22250
location: 5723..5947
location: region:5723-5947:1
so has part: feature:5723-5947:1:exon

WP_040118338.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5723-5947:1:exon

GZ59_RS22255
type: Gene
subclass of: SO_0000704
RO_0002162: 29471
locus tag: GZ59_RS22255
old locus tag: GZ59_46300
so part of: sequence
location: 5968..6636
location: region:5968-6636:1
so has part: feature:5968-6636:1:exon
subclass of: SO_0000010

57211216
type: Gene
SIO_000068: ncbigene

position:5968:1
position: 5968
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6636:1
position: 6636
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5968-6636:1:exon

GZ59_RS22255
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29471
locus tag: GZ59_RS22255
old locus tag: GZ59_46300
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008815930.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: lytic transglycosylase domain-containing protein
translation: MISSAVLLTLAMQCAPTIHPDTSHDVARVESGLNPFAIGVVGQKKGLFPSNINDALDHIDQLKAKGKNYSVGLMQINQANFSRYGVTAKQLFNPCTNLTVFEKIITDCYLRGGTLKRALSCYYSGNFDTGQKPEAAFSKTSYVQRMGYKPAQKYVVPSSKADQEKQNATPGNAAPTPQIRYPKGIVRGDLITSDTQVSPNQATPVSFPSQVVRGEFVVITSK
SIO_010081: GZ59_RS22255
subclass of: SO_0000673
so part of: GZ59_RS22255
location: 5968..6636
location: region:5968-6636:1
so has part: feature:5968-6636:1:exon

WP_040118339.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5968-6636:1:exon

GZ59_RS22260
type: Gene
subclass of: SO_0000704
RO_0002162: 29471
locus tag: GZ59_RS22260
old locus tag: GZ59_46310
so part of: sequence
location: 6646..6939
location: region:6646-6939:1
so has part: feature:6646-6939:1:exon
subclass of: SO_0000010

57211217
type: Gene
SIO_000068: ncbigene

position:6646:1
position: 6646
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6939:1
position: 6939
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6646-6939:1:exon

GZ59_RS22260
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29471
locus tag: GZ59_RS22260
old locus tag: GZ59_46310
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012885319.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TrbC/VirB2 family protein
translation: MKILRSIKNAPAYLAAVAASAAMSSPAFADGFAKAETLLEKISSGLTGLAIVTITIAVIWVGYKVLWDGKSLHDCKGIIIGGILIASGAEIGALLMS
SIO_010081: GZ59_RS22260
subclass of: SO_0000673
so part of: GZ59_RS22260
location: 6646..6939
location: region:6646-6939:1
so has part: feature:6646-6939:1:exon

WP_040118340.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6646-6939:1:exon

GZ59_RS22265
type: Gene
subclass of: SO_0000704
RO_0002162: 29471
locus tag: GZ59_RS22265
old locus tag: GZ59_46320
so part of: sequence
location: 6949..9696
location: region:6949-9696:1
so has part: feature:6949-9696:1:exon
subclass of: SO_0000010

57211218
type: Gene
SIO_000068: ncbigene

position:6949:1
position: 6949
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9696:1
position: 9696
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6949-9696:1:exon

GZ59_RS22265
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29471
locus tag: GZ59_RS22265
old locus tag: GZ59_46320
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001096399.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: VirB3 family type IV secretion system protein
translation: MVTLNKALTRPAMLFGIPMVPLVIVSGAIILLAIYLTKLLLLFLPVSWFVMNQMARKDAHIFGLAFLKLKTRGNKTCNTHYGATAFLANDYDAVDITEFINTMRLNERVTLTKHIPYSSHIHENVIKTRGSDLIATWEIGGTAFECDTEENLDILSGQFNNLIKSFEGRPVTFYVHNIRETYHDHFDGHSGNDFADTVSERYYSTIENHPFRHNRLFFTACYMPFVGLDKVERKRMSDGQKQHALDSALKEMLEICQTVGTSLSRFTANQLGAYEENGCVFSSQLSFYRRLLSGVWQKTAVTRTPFYETLGTTDLFFTGDAGQSNNVNGKTFFRGLEVKDYAPESFTGIMNVLLYAPCDYVITQSFTCMAKDEAQKHIKQTAKRLRSTEDDAISQQEDLFVALDMLQAGHIAFGKYHFSLMVSAPGTERLIKDTNSLINAFTDLGITPTLSTLSLPAAYLAQMPGVYTLRPRLVPISSQNFAELASFHNFYTGKRDKNPWGEALCVLKTPSGGAYYMNLHNSMLNKDDFNEKNLGNTSVIGTAGSGKTMLMAFIQVMMQKYRQPRSFSPQAKTQRLTTVYFDKDRGAELNVRALGGQYYKVKSGEPTGWNPFRLPPTKRNLNFIKKLMRILCTRNGQTLFPRDELRLSQAVDAVMKELPAEHRGFGITRLLENLTEPPTKEAQENGLRVRLSQWAQGGEYGWVFDNDLDTFDIGECDNFGIDGTEFLDDADVCAPISFYLLYRVTSLLDGRRLVIFMDEFWKWLNDPVFSDFAFNVLKVIRKLNGVFIPGTQSPAEILINPISPAVVEQCGTQIFTANPKADRKDYVDGLKVAPEIFDIIKNLDPLSRQFVIVKSPLKKGDLRNFAALVTLDLSGLGTYTKVLSSSADNLEIFDSVFQDGMKPDDWLERYLQLAL
SIO_010081: GZ59_RS22265
subclass of: SO_0000673
so part of: GZ59_RS22265
location: 6949..9696
location: region:6949-9696:1
so has part: feature:6949-9696:1:exon

WP_040118341.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6949-9696:1:exon

GZ59_RS22270
type: Gene
subclass of: SO_0000704
RO_0002162: 29471
locus tag: GZ59_RS22270
old locus tag: GZ59_46330
so part of: sequence
location: 9708..10430
location: region:9708-10430:1
so has part: feature:9708-10430:1:exon
subclass of: SO_0000010

57211219
type: Gene
SIO_000068: ncbigene

position:9708:1
position: 9708
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10430:1
position: 10430
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9708-10430:1:exon

GZ59_RS22270
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29471
locus tag: GZ59_RS22270
old locus tag: GZ59_46330
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000770034.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type IV secretion system protein
translation: MKLKTLSAAYIAGALLCPSLTAYAGIPVMVDADPLRQIQYATDAQNWLKTVEQYKSQLNAYKSQLATATGVRNVQDFLSQAKGLSNDLKNLQKNGISLNDLLTNSGGSYSSALNGLYSKYKMFDTCDATQTQSYADTCKQIVINRAVAVEDTTAVQEKINSTVSDISTLVSRIEMSQDAKESQDLANTITSKSVQLNALTTQWEMSVKQSELRDQMLTSQRQKAHRQQQLSAPVADLNNL
SIO_010081: GZ59_RS22270
subclass of: SO_0000673
so part of: GZ59_RS22270
location: 9708..10430
location: region:9708-10430:1
so has part: feature:9708-10430:1:exon

WP_040118342.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9708-10430:1:exon

GZ59_RS22275
type: Gene
subclass of: SO_0000704
RO_0002162: 29471
locus tag: GZ59_RS22275
old locus tag: GZ59_46340
so part of: sequence
location: 10445..10735
location: region:10445-10735:1
so has part: feature:10445-10735:1:exon
subclass of: SO_0000010

57211220
type: Gene
SIO_000068: ncbigene

position:10445:1
position: 10445
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10735:1
position: 10735
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10445-10735:1:exon

GZ59_RS22275
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29471
locus tag: GZ59_RS22275
old locus tag: GZ59_46340
inference: COORDINATES: protein motif:HMM:NF033894.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: EexN family lipoprotein
translation: MTINNRTILSSLLVLSLFALGGCEEKKTEEWYMAHHDELLKDYADCLKTKTFSSERCIPVVNAKKRSINEPDIAAGIKKIQMEYMQSKITPENNKS
SIO_010081: GZ59_RS22275
subclass of: SO_0000673
so part of: GZ59_RS22275
location: 10445..10735
location: region:10445-10735:1
so has part: feature:10445-10735:1:exon

WP_040118343.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10445-10735:1:exon

GZ59_RS22280
type: Gene
subclass of: SO_0000704
RO_0002162: 29471
locus tag: GZ59_RS22280
old locus tag: GZ59_46350
so part of: sequence
location: 10732..11733
location: region:10732-11733:1
so has part: feature:10732-11733:1:exon
subclass of: SO_0000010

57211221
type: Gene
SIO_000068: ncbigene

position:10732:1
position: 10732
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11733:1
position: 11733
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10732-11733:1:exon

GZ59_RS22280
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29471
locus tag: GZ59_RS22280
old locus tag: GZ59_46350
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005967108.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type IV secretion system protein
translation: MSSEGIFTGMDAAVMNGLNSVIQGQMSLYSTMMAGLVTGSATLYILWRGYQTLAGKLHTPVEDVAWDLARMGIILAFVTNADGYLDASVAAINGLKDGLSGSENVWVLLDTLWGKAQILGEKLFNLDDSTYVQLNGGIAELLVWGGTIVTLVIATIVNMGAEIMLLLMTTTAPIFIFCLIYGFLRPMFNNWLQVIFTAILTLMFSALSLRIAIQYLSSVLDKASSGADVNNIVTLAAQSCLAGIGAGFVVWLSAKIAGSLAGASVQGVVQGAAKMGLMAGGGAAKKAASTVGKPVGNALGSIGDKAANNLKGSSASNAKASAKAAVEKMKAQN
SIO_010081: GZ59_RS22280
subclass of: SO_0000673
so part of: GZ59_RS22280
location: 10732..11733
location: region:10732-11733:1
so has part: feature:10732-11733:1:exon

WP_040118344.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10732-11733:1:exon

GZ59_RS22285
type: Gene
subclass of: SO_0000704
RO_0002162: 29471
locus tag: GZ59_RS22285
old locus tag: GZ59_46370
so part of: sequence
location: 11933..12616
location: region:11933-12616:1
so has part: feature:11933-12616:1:exon
subclass of: SO_0000010

57211222
type: Gene
SIO_000068: ncbigene

position:11933:1
position: 11933
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12616:1
position: 12616
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11933-12616:1:exon

GZ59_RS22285
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29471
locus tag: GZ59_RS22285
old locus tag: GZ59_46370
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010286993.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type IV secretion system protein
translation: MSELQKTLNTSQSFEKVMLTRDARAKKLAFVIAAVATVFALLSVVAVIVMLPLKHTEVELYTVDSHSGRAEYVTRVKEKDISTEEAMAKAFAANYATLREGYNYFALQSNYDTVQLFNSGQVNADYLAWFAGQDAPDKVYQNAANVVETEVISNIISQATAPDMLATLRLKKTIRHVVDGATRVEFWNVRLTYHYVPHKALTDAQRESNPLGFIVTSYQRDKELRKE
SIO_010081: GZ59_RS22285
subclass of: SO_0000673
so part of: GZ59_RS22285
location: 11933..12616
location: region:11933-12616:1
so has part: feature:11933-12616:1:exon

WP_040118345.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11933-12616:1:exon

GZ59_RS22290
type: Gene
subclass of: SO_0000704
RO_0002162: 29471
gene: virB9
locus tag: GZ59_RS22290
old locus tag: GZ59_46380
so part of: sequence
location: 12616..13512
location: region:12616-13512:1
so has part: feature:12616-13512:1:exon
subclass of: SO_0000010

57211223
type: Gene
SIO_000068: ncbigene

position:13512:1
position: 13512
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12616-13512:1:exon

GZ59_RS22290
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29471
gene: virB9
locus tag: GZ59_RS22290
old locus tag: GZ59_46380
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009635184.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: P-type conjugative transfer protein VirB9
translation: MRNLFVILTLMLCSSAWGAATPQGSRYDSRMQQVAYNVQNSTVINTRAGYVTTLVFADDEAVISTEVGFIKGWAVTKEANRVYIRPAPITQPVTDADGSTVQQAFLPESKDWKTNLFVTTSAHFYSLELNVLDEGAPASSLAFVVTWNYPEASRKASMEAVKARQKELTEAQEKSRIAKAFNAATTPRNWNYAQRVKQGSEMAMPDFAYDDGRFTYLGFSPLKKIPSPFLLVNGKEQTTIPSFSQQGNYRVMVVHSLAPKLVLRYGDAVVGIVNQGFGLATVSNGSTVSPAVKLEEKP
SIO_010081: GZ59_RS22290
subclass of: SO_0000673
so part of: GZ59_RS22290
location: 12616..13512
location: region:12616-13512:1
so has part: feature:12616-13512:1:exon

WP_032490881.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12616-13512:1:exon

GZ59_RS22295
type: Gene
subclass of: SO_0000704
RO_0002162: 29471
gene: virB10
locus tag: GZ59_RS22295
old locus tag: GZ59_46390
so part of: sequence
location: 13509..14789
location: region:13509-14789:1
so has part: feature:13509-14789:1:exon
subclass of: SO_0000010

57211224
type: Gene
SIO_000068: ncbigene

position:13509:1
position: 13509
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14789:1
position: 14789
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13509-14789:1:exon

GZ59_RS22295
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29471
gene: virB10
locus tag: GZ59_RS22295
old locus tag: GZ59_46390
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015689806.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: VirB10/TraB/TrbI family type IV secretion system protein
translation: MTDTQNPTPLDGSENPSSEREKTVAELEVEARERAQAQRKESAPVEDVKPDQPEVNSLKKRGKNRLMTLGILLLAALIVLAWMGDWAYNHFMSAPAPKAEQAKTAPDDVSYGRKRQGMGMAENPLGLQDTASTDTTTNLPRAAAPPVSFNKSMALAAMASTQSSGQTATVSRTAERSTTEHSVSPATAQPYTPCTVPLVMDASGKLACPVGAEASPGVAPAVSTVTGVQRMRLDPDLYIPVDTYIPCTLQTRFVSDVAGRISCLISEDVYSESTHVRLIPAGTRARGVYKTGTLNHGQARMFVMWTELRTPDRLKIPMVDSQVVGQLGEAGIDGWIDTHFWERFGNAMMLSTVQDVAAAAASSAPSKDRNTDYTENSRAAAAEMAKTALDNSINIPPTIYKNQGDIIGIMTGSDIDFSGVYSLKLK
SIO_010081: GZ59_RS22295
subclass of: SO_0000673
so part of: GZ59_RS22295
location: 13509..14789
location: region:13509-14789:1
so has part: feature:13509-14789:1:exon

WP_040118347.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13509-14789:1:exon

GZ59_RS22300
type: Gene
subclass of: SO_0000704
RO_0002162: 29471
gene: virB11
locus tag: GZ59_RS22300
old locus tag: GZ59_46400
so part of: sequence
location: 14800..15828
location: region:14800-15828:1
so has part: feature:14800-15828:1:exon
subclass of: SO_0000010

57211225
type: Gene
SIO_000068: ncbigene

position:14800:1
position: 14800
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15828:1
position: 15828
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14800-15828:1:exon

GZ59_RS22300
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29471
gene: virB11
locus tag: GZ59_RS22300
old locus tag: GZ59_46400
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002668618.1
GO component: GO:0043684 - type IV secretion system complex [Evidence IEA]
GO process: GO:0044097 - secretion by the type IV secretion system [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: P-type DNA transfer ATPase VirB11
translation: MGVSNISLDQHKQRMFGDFLHLDGLTEIAVNRPGELFTKIRGVWQKHPVPLTLAQCQTFATALANYQGDHIDDTSPVLSATLESGERCQVVMPPACERDTVSITIRKPSLIQIPHQSYIDGGFYDRVTGKEKTASHDDELLRLYNAGAIPAFMEKCVEYGKTIIIVGGTGSGKTTYLKTMIGYIPVNLRLVTIEDNPETRFYGHENYVHLFYPADAGEKAIVTPASLVRANYRMNPDRILLAEVRGGEAWDCLKIIGSGHEGLITSLHAGSPEEAINGLAERCYQNMECQNIPYSVLLRKVLNSIDVIASIDVSGDIRRMGDIYFKPVHRAGVMENFRNETF
SIO_010081: GZ59_RS22300
subclass of: SO_0000673
so part of: GZ59_RS22300
location: 14800..15828
location: region:14800-15828:1
so has part: feature:14800-15828:1:exon

WP_040118348.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14800-15828:1:exon

GZ59_RS22305
type: Gene
subclass of: SO_0000704
RO_0002162: 29471
locus tag: GZ59_RS22305
old locus tag: GZ59_46410
so part of: sequence
location: 15815..16219
location: region:15815-16219:1
so has part: feature:15815-16219:1:exon
subclass of: SO_0000010

57211226
type: Gene
SIO_000068: ncbigene

position:15815:1
position: 15815
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16219:1
position: 16219
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15815-16219:1:exon

GZ59_RS22305
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29471
locus tag: GZ59_RS22305
old locus tag: GZ59_46410
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011998918.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: cag pathogenicity island Cag12 family protein
translation: MKHFKPLVVLSALLVLAGCSSPPEPAAVEWDKPLSPTNGTLPLWQENMVVTPSPVVSGQWSRVITDFQDEGQIWTPDVWYAVAHSPHVAVSAPDATAFFAAKAWLRQHGAQGLISYLPKTHCLTCNTTDIYFSR
SIO_010081: GZ59_RS22305
subclass of: SO_0000673
so part of: GZ59_RS22305
location: 15815..16219
location: region:15815-16219:1
so has part: feature:15815-16219:1:exon

WP_040118349.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15815-16219:1:exon

GZ59_RS22310
type: Gene
subclass of: SO_0000704
RO_0002162: 29471
locus tag: GZ59_RS22310
old locus tag: GZ59_46420
so part of: sequence
location: 16323..16628
location: region:16323-16628:1
so has part: feature:16323-16628:1:exon
subclass of: SO_0000010

57211227
type: Gene
SIO_000068: ncbigene

position:16323:1
position: 16323
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16628:1
position: 16628
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16323-16628:1:exon

GZ59_RS22310
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29471
locus tag: GZ59_RS22310
old locus tag: GZ59_46420
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000754361.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: conjugal transfer protein
translation: MKKTAIAAALLCLTAGFSAPSFAADPCEVVLCMFGKVTGNSGGSECSSAEKAFFSINSFKKKGRFDPSKTSNMRKALLGECKAADPAAIAKIISQFGRIRG
SIO_010081: GZ59_RS22310
subclass of: SO_0000673
so part of: GZ59_RS22310
location: 16323..16628
location: region:16323-16628:1
so has part: feature:16323-16628:1:exon

WP_040118350.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16323-16628:1:exon

GZ59_RS22315
type: Gene
subclass of: SO_0000704
RO_0002162: 29471
locus tag: GZ59_RS22315
old locus tag: GZ59_46430
so part of: sequence
location: 16631..18853
location: region:16631-18853:1
so has part: feature:16631-18853:1:exon
subclass of: SO_0000010

57211228
type: Gene
SIO_000068: ncbigene

position:16631:1
position: 16631
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18853:1
position: 18853
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16631-18853:1:exon

GZ59_RS22315
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29471
locus tag: GZ59_RS22315
old locus tag: GZ59_46430
EC number: 5.6.2.1
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011191426.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]
GO process: GO:0006265 - DNA topological change [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type IA DNA topoisomerase
translation: MRLFIAEKKGLGEVIALALGNGVNRGGYIECGTDVVTWGSGHLLELVKPESHNPAYEKWNEADLPLKLRPHRYQPIERTAGQFKTVAALIEKASEIVHAGDPDAEGQLLIDEILTYTGTKKPVKRVLINDLNTEKARQALTQLRDNSEFYGLSQSALARSVGDQLFGFNMTRGYTLAARKKGGKDVLSVGRVQTPILGLIVHRYEAFKNHAAAFYYAVSAGFMINGFDLTRCDGGEIPARFSVPDDAPTDDKKRIIDKHYADNIASTTQYQPATVTQAQTEPKTSPAPLPFSLLDLQVHMSREHGLPAEKTLAVTQSLRDNFKAITYNRSDCRYLNTEQFNDAPQTIAAVSAALSGAFPSQVLADLDSNRKSRAFNEGKVGAHTAIIPTGTAPDTAKMSQDERAVYTAIATQYLVQFLPEKTYLATSVSFCAAGNTFTASARKTTGMGWTALLQESDSDAESGDGESEPGKDNGDGLFSVLTALSVNDAGTCKTVTVKAEKTKPLPLYTEATLLRDLQRVAKYVKDPRIKALLVSRDKDTEGENGGIGTPATRAEMLKTLLNRNFYTVEKKKLIPTELGISFIHALPSIATEPDMTALWHEQQQQIEKGKMTCDAFLDELEIFIAEQLQHVDVSAVNVTASDKEKSEKSQFERLNAPCPSCGSSIIVTPKIFRCTQCDFKIWPTIAGKNLTRNQVETIISKGKSAEIKGFTSKAGKPFSAFVVLKDKATGQTAFEFPPRK
SIO_010081: GZ59_RS22315
subclass of: SO_0000673
so part of: GZ59_RS22315
location: 16631..18853
location: region:16631-18853:1
so has part: feature:16631-18853:1:exon

WP_040118351.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16631-18853:1:exon

GZ59_RS22320
type: Gene
subclass of: SO_0000704
RO_0002162: 29471
locus tag: GZ59_RS22320
old locus tag: GZ59_46440
so part of: sequence
location: 18915..19358
location: region:18915-19358:1
so has part: feature:18915-19358:1:exon
subclass of: SO_0000010

57211229
type: Gene
SIO_000068: ncbigene

position:18915:1
position: 18915
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19358:1
position: 19358
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18915-19358:1:exon

GZ59_RS22320
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29471
locus tag: GZ59_RS22320
old locus tag: GZ59_46440
inference: COORDINATES: protein motif:HMM:NF013014.2
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: H-NS family nucleoid-associated regulatory protein
translation: MSDIKYQDVYTYLSSGRNMNQFIKRCDYGLLIDLQNKLEVHISEWEAQQEKEQEAIKLRNEKRSELLALIVSEGFSPEELITAAAIKTKSRRRMKYQYRDGDAIKKWSGVGRVPRSIQERLNSGATLDDFLIAEEIKNENQNKTPHN
SIO_010081: GZ59_RS22320
subclass of: SO_0000673
so part of: GZ59_RS22320
location: 18915..19358
location: region:18915-19358:1
so has part: feature:18915-19358:1:exon

WP_051918076.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18915-19358:1:exon

GZ59_RS22325
type: Gene
subclass of: SO_0000704
RO_0002162: 29471
locus tag: GZ59_RS22325
old locus tag: GZ59_46450
so part of: sequence
location: 20308..22143
location: region:20308-22143:1
so has part: feature:20308-22143:1:exon
subclass of: SO_0000010

57211230
type: Gene
SIO_000068: ncbigene

position:20308:1
position: 20308
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22143:1
position: 22143
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20308-22143:1:exon

GZ59_RS22325
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29471
locus tag: GZ59_RS22325
old locus tag: GZ59_46450
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017459225.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TraM recognition domain-containing protein
translation: MLNKITEKLMPIVDNATAFFGYMQQHQLLLALLSGLTLPFIVPLKRDEHEKAPIWQRVIICFSLLCFIFGTISPATSYVLRFLYPARLEVSTPVILWAILISFTVVGVIFHYVARRVLSPEIDKLKRKMVKKTSLERNTRTDVREIKALLPTTEKYDPEQFIDLAKGVFIGLNENRDPQYIPLSDWQKQHADVIGTTGAGKGVATGLLIYQSILAGEGVFEMDPKNDEWAPHLIRKACEDAAKPFYLIDLNKPEYQLNLIDGITAEHLEELFIAGFSLAEKGEAADFYRIDDRRAARATAQLINENPTATIRDLFNSDFVQSIAETIKGFFGKIEELALLNSINAPEGLALKKIFDDGGCCYIIGSMRNSKVIATQRMILVRLMQLAELRDRINTTPRPIAIHLAELKYHLSRPALEGLGAARDKGVHIIMDHQSVADLRDCPADLNGDAVVGAVVENAKFKLVYKLQDPDTALWVAKMSGTILVDDESRKAKTNRVLTEVIDDERTIRQAERFYIDSNMLLNLPPFVSYIFTATELPRASLISPLKVKKQPLQVYDVTPITPISIKKPLDFTEAPATQTAPVLVAAEKNRTAELAPVEPVVETSSFDFDE
SIO_010081: GZ59_RS22325
subclass of: SO_0000673
so part of: GZ59_RS22325
location: 20308..22143
location: region:20308-22143:1
so has part: feature:20308-22143:1:exon

WP_051918077.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20308-22143:1:exon

GZ59_RS22330
type: Gene
subclass of: SO_0000704
RO_0002162: 29471
gene: mobC
locus tag: GZ59_RS22330
old locus tag: GZ59_46460
so part of: sequence
location: 22153..22899
location: region:22153-22899:1
so has part: feature:22153-22899:1:exon
subclass of: SO_0000010

57211231
type: Gene
SIO_000068: ncbigene

position:22153:1
position: 22153
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22899:1
position: 22899
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22153-22899:1:exon

GZ59_RS22330
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29471
gene: mobC
locus tag: GZ59_RS22330
old locus tag: GZ59_46460
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009113441.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MobC family replication-relaxation protein
translation: MLISSDKERKGRNSEKMAQLLNFLKEETYSDFDTLKQLFRYKAHQPLYLLLDKLEGMGLIQKYVFVSRLGSLTLWGITQDGIAVVLSPEDKIFPARFEPAKLKGWSLDHHLDNQLVHLTLAQKGAMDWINGDRNTFLNQFKVKHRPDGLITLPNGKRIAIETERSLKTKARYQQIIASHLRARTENLWFFVFYIVPDEQKKRALMLLFDTIKQVIENSQHVTLEAKHRNVFRFYTMDELKSLELNNYA
SIO_010081: GZ59_RS22330
subclass of: SO_0000673
so part of: GZ59_RS22330
location: 22153..22899
location: region:22153-22899:1
so has part: feature:22153-22899:1:exon

WP_040118352.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22153-22899:1:exon

GZ59_RS22335
type: Gene
subclass of: SO_0000704
RO_0002162: 29471
locus tag: GZ59_RS22335
old locus tag: GZ59_46470
so part of: sequence
location: 22892..23413
location: region:22892-23413:1
so has part: feature:22892-23413:1:exon
subclass of: SO_0000010

57211232
type: Gene
SIO_000068: ncbigene

position:22892:1
position: 22892
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23413:1
position: 23413
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22892-23413:1:exon

GZ59_RS22335
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29471
locus tag: GZ59_RS22335
old locus tag: GZ59_46470
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004170855.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: phospholipase D family protein
translation: MRKSILFALVITLSPPVMATLTVGFSPATTDQQSALEVVLSTINGAKRSVDVAAYSFTSKPIAAALVAAKNRGVSVRVVADEKANNDRYTAVTFLANQSVPVRLNARYAIMHNKFMVVDGDTVQTGSFNYTASANSRNAENALLVQNAPALAGTYQAEFNRLWSESIAQTSHY
SIO_010081: GZ59_RS22335
subclass of: SO_0000673
so part of: GZ59_RS22335
location: 22892..23413
location: region:22892-23413:1
so has part: feature:22892-23413:1:exon

WP_040118353.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22892-23413:1:exon

GZ59_RS22340
type: Gene
subclass of: SO_0000704
RO_0002162: 29471
locus tag: GZ59_RS22340
old locus tag: GZ59_46480
so part of: sequence
location: complement(23458..24213)
location: region:23458-24213:-1
so has part: feature:23458-24213:-1:exon
subclass of: SO_0000010

57211233
type: Gene
SIO_000068: ncbigene

position:23458:-1
position: 23458
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:24213:-1
position: 24213
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23458-24213:-1:exon

GZ59_RS22340
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29471
locus tag: GZ59_RS22340
old locus tag: GZ59_46480
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016235141.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTPLWKPMPYYVMRDCNVLKNIKKNKVSTGVASLKIFILLCLKSEVDDQGGYSASITYDQFTQLCSLSRRLISEGLRYLESTGVIETLGERKKRYILLNCKLEDKKRVPAPFHTSYGHWCKLPYKGLVDENGRITAFESMSNRNILELNSLKIFIYLLMIRSGGKVYSAVTLKTIKDKLRLSYQEIMVAIAFLNSVGLVEKVSVGSNSIGNYDERFSIKFLVCGWEILEWKPHYLSSDKDDWKEQLLSDYF
SIO_010081: GZ59_RS22340
subclass of: SO_0000673
so part of: GZ59_RS22340
location: complement(23458..24213)
location: region:23458-24213:-1
so has part: feature:23458-24213:-1:exon

WP_223240927.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:23458-24213:-1:exon

GZ59_RS22345
type: Gene
subclass of: SO_0000704
RO_0002162: 29471
locus tag: GZ59_RS22345
old locus tag: GZ59_46500
so part of: sequence
location: complement(24801..25751)
location: region:24801-25751:-1
so has part: feature:24801-25751:-1:exon
subclass of: SO_0000010

57211234
type: Gene
SIO_000068: ncbigene

position:24801:-1
position: 24801
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:25751:-1
position: 25751
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24801-25751:-1:exon

GZ59_RS22345
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29471
locus tag: GZ59_RS22345
old locus tag: GZ59_46500
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000178515.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: zincin-like metallopeptidase domain-containing protein
translation: MTMNLHTQTSVPNPAPATSASPLEQSGSSKTKFSKGKAKPDVYQVVTDSIIEALETGVKPWVCPWKRNGAVSGIPSNFTTGTSYSGINIMMLWYSAAAQGFTDSRWLTYKQAQELGAQVCKGEKGTTAIFYKMLEKETEAGEVEKIPMLKSFTVFNAEQIEGLTLEEKTAPQPVAEFDPLPQVEALFQRTGAKITERGQQAFFRPSTDEIWMPERHLFTDAANFYATGLHELVHWSGAKNRLNREKGGKFGSAGYAFEELIAELGSAFLMADLSIYGEVQHENYIASWLEALKGDKRFIFKAASAASKAHRYLMDF
SIO_010081: GZ59_RS22345
subclass of: SO_0000673
so part of: GZ59_RS22345
location: complement(24801..25751)
location: region:24801-25751:-1
so has part: feature:24801-25751:-1:exon

WP_040118355.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24801-25751:-1:exon

GZ59_RS22350
type: Gene
subclass of: SO_0000704
RO_0002162: 29471
locus tag: GZ59_RS22350
old locus tag: GZ59_46520
so part of: sequence
location: 26122..26841
location: region:26122-26841:1
so has part: feature:26122-26841:1:exon
subclass of: SO_0000010

57211235
type: Gene
SIO_000068: ncbigene

position:26122:1
position: 26122
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26841:1
position: 26841
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26122-26841:1:exon

GZ59_RS22350
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29471
locus tag: GZ59_RS22350
old locus tag: GZ59_46520
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MEWPKVFSDVGDDIRKKAFEKFDVEAITKTTLLPGQEKTGYHKRKLTTDYYIFIFTDREDKKKQGSFCCGVHASKGWFELNGQNAHNIASYNPLTGESSGDVGTVGTRSTTAINHPKANKEKKQLINILQTYIALTDSITSTKEGESTAVKILKKLITHPSNSPERSEIRAVNTLLYKTFTDIKYKQHDITKYSELVLFKENSLGITIKSIPVSYFNENIKNNRESKHSDYVYPNPPSF
SIO_010081: GZ59_RS22350
subclass of: SO_0000673
so part of: GZ59_RS22350
location: 26122..26841
location: region:26122-26841:1
so has part: feature:26122-26841:1:exon

WP_040118356.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:26122-26841:1:exon

GZ59_RS22355
type: Gene
subclass of: SO_0000704
RO_0002162: 29471
locus tag: GZ59_RS22355
old locus tag: GZ59_46530
so part of: sequence
location: complement(27044..28573)
location: region:27044-28573:-1
so has part: feature:27044-28573:-1:exon
subclass of: SO_0000010

57211236
type: Gene
SIO_000068: ncbigene

position:27044:-1
position: 27044
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:28573:-1
position: 28573
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:27044-28573:-1:exon

GZ59_RS22355
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29471
locus tag: GZ59_RS22355
old locus tag: GZ59_46530
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012442908.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: SIR2 family protein
translation: MNINEFVNNYKNHPVLFVGTGFSLRYLTQSYSWDALLKKVVIDLTGNVEDYYDIRYRHQIEAKTNYEKVASDIEELFNQALGKDRHGEFEFINDEFYKDMNEGGHGRSRFKMYLAHLLRDTTLKDDVEEEIKLLAKARKNIGSVITTNYDLLIEKTFEFSPLIGNNILLSNPYGSVYKIHGCVTDSEGMIITENDYVNFNDKYELIRAQLLSLFIHNPIIFIGYSISDNNIKNILKTIFSCVDPRSEMAEQIRRNFLLIEFDSESESQDVVEHDIDIEGLSTIRINKIKTNAFDVIYEAISSLLLPVSAMDIRKVQRVWGEIRSGGNIKVSITEDIDSLNNGDMVLAIGTSKTVKYEYQTTSEMMQNYFKILDEENYQLILLLNKQQVSKSQHFPFYAFGGICPELNNIEACKRRQKEKVDEVFNRTPQSCKVDYDNLEEIYEGSYSISKQCSLVFYSAYRDILPLSVFKSFLINFEDKKCTDYRRLLCLYDLKAPLPKARKQPLVLPG
SIO_010081: GZ59_RS22355
subclass of: SO_0000673
so part of: GZ59_RS22355
location: complement(27044..28573)
location: region:27044-28573:-1
so has part: feature:27044-28573:-1:exon

WP_050880444.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:27044-28573:-1:exon

GZ59_RS22360
type: Gene
subclass of: SO_0000704
RO_0002162: 29471
locus tag: GZ59_RS22360
old locus tag: GZ59_46540
pseudo: true
so part of: sequence
location: complement(<28885..>29224)
location: region:28885-29224:-1
so has part: feature:28885-29224:-1:exon
subclass of: SO_0000010

57211237
type: Gene
SIO_000068: ncbigene

position:28885:-1
position: 28885
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:29224:-1
position: 29224
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28885-29224:-1:exon

GZ59_RS22360
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29471
locus tag: GZ59_RS22360
old locus tag: GZ59_46540
inference: COORDINATES: similar to AA sequence:RefSeq:YP_005227789.1
note: frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: zincin-like metallopeptidase domain-containing protein
SIO_010081: GZ59_RS22360
subclass of: SO_0000673
so part of: GZ59_RS22360
location: complement(<28885..>29224)
location: region:28885-29224:-1
so has part: feature:28885-29224:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:28885-29224:-1:exon

GZ59_RS22365
type: Gene
subclass of: SO_0000704
RO_0002162: 29471
locus tag: GZ59_RS22365
old locus tag: GZ59_46550
so part of: sequence
location: complement(29300..29785)
location: region:29300-29785:-1
so has part: feature:29300-29785:-1:exon
subclass of: SO_0000010

57211238
type: Gene
SIO_000068: ncbigene

position:29300:-1
position: 29300
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:29785:-1
position: 29785
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:29300-29785:-1:exon

GZ59_RS22365
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29471
locus tag: GZ59_RS22365
old locus tag: GZ59_46550
inference: COORDINATES: protein motif:HMM:NF025324.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type III toxin-antitoxin system ToxN/AbiQ family toxin
translation: MKFYIVSDRYISYLKTIDGKVPDNYNGSRPFIGVVIEVNGVSYIAPLSSPKPQLERINNSKPTAFKIYNRKDGTEFLGVINLNYMIPVLDNEVTLLDVDNVDVKYKNLLKKQHEYIKIHQADIEARAIKLHDLVRTKKQAHFVDVSCCFDDLEANFKSFTP
SIO_010081: GZ59_RS22365
subclass of: SO_0000673
so part of: GZ59_RS22365
location: complement(29300..29785)
location: region:29300-29785:-1
so has part: feature:29300-29785:-1:exon

WP_051918079.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:29300-29785:-1:exon

GZ59_RS22375
type: Gene
subclass of: SO_0000704
RO_0002162: 29471
locus tag: GZ59_RS22375
old locus tag: GZ59_46560
so part of: sequence
location: 30879..31856
location: region:30879-31856:1
so has part: feature:30879-31856:1:exon
subclass of: SO_0000010

57211239
type: Gene
SIO_000068: ncbigene

position:30879:1
position: 30879
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:31856:1
position: 31856
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:30879-31856:1:exon

GZ59_RS22375
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29471
locus tag: GZ59_RS22375
old locus tag: GZ59_46560
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006122497.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MTQTVPTCFVRAYLRASTSEQDASRARSSIDTFATERGLAICNYYIENESGSRLERPELFRLLKDCRQRDILLIEDVDRLSRLAGNDWITLKKMIARKDIRVVAVNVPTTWLHLSPGLTDFDNRMFSAINDMLLDMLAAVARRDYEQRRERQKQGIAKAKAEGKYQGRKVNQHRYDAINRLLASGSSWSQVQKTINCSRGTISRAIKQCPPVTLSGQSESATAFSVTTTLWVPVQNGSKFTRGKKKVREDIAWLVESDYDGKVLDNNEYSLIFTYSDEADLKEQIDELFDEIYRTAEIRNCVVDDMTLTNDATNQGWKEYDGGWQ
SIO_010081: GZ59_RS22375
subclass of: SO_0000673
so part of: GZ59_RS22375
location: 30879..31856
location: region:30879-31856:1
so has part: feature:30879-31856:1:exon

WP_040118358.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:30879-31856:1:exon