Anoxybacillus amylolyticus strain DSM 15939 plasmid pDSM15939_2, 16s ribosomal rna rrna prediction is too short.
Bacteria; Bacillota; Bacilli; Bacillales; Bacillaceae; Anoxybacillus.
Anoxybacillus amylolyticus sp. nov., a thermophilic amylase producing bacterium isolated from Mount Rittmann (Antarctica)
Submitted (27-APR-2016) Bioscience, Los Alamos National Laboratory, PO Box 1663, Los Alamos, NM 87545, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP015440.1.\nSource bacteria/DNA available from Dr. Pilar E. Junier.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: DEC-2015\nAssembly Method :: HGAP v. unspecified\nGenome Coverage :: 158x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/23/2023 05:34:40\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,342\nCDSs (total) :: 3,234\nGenes (coding) :: 3,138\nCDSs (with protein) :: 3,138\nGenes (RNA) :: 108\nrRNAs :: 7, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 7, 7 (5S, 16S, 23S)\ntRNAs :: 82\nncRNAs :: 5\nPseudo Genes (total) :: 96\nCDSs (without protein) :: 96\nPseudo Genes (ambiguous residues) :: 0 of 96\nPseudo Genes (frameshifted) :: 32 of 96\nPseudo Genes (incomplete) :: 69 of 96\nPseudo Genes (internal stop) :: 31 of 96\nPseudo Genes (multiple problems) :: 28 of 96\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Anoxybacillus amylolyticus
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: similar to AA sequence:RefSeq:WP_014194613.1
GO:0004053 - arginase activity [Evidence IEA]
GO:0019547 - arginine catabolic process to ornithine [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009362620.1
COORDINATES: similar to AA sequence:RefSeq:WP_003247642.1
COORDINATES: similar to AA sequence:RefSeq:WP_011229664.1
GO:0004016 - adenylate cyclase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015373736.1
COORDINATES: similar to AA sequence:RefSeq:WP_009362624.1
GO:0008966 - phosphoglucosamine mutase activity [Evidence IEA]
GO:0009103 - lipopolysaccharide biosynthetic process [Evidence IEA]; GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011229667.1
GO:0004360 - glutamine-fructose-6-phosphate transaminase (isomerizing) activity [Evidence IEA]
GO:0006040 - amino sugar metabolic process [Evidence IEA]; GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
glutamine--fructose-6-phosphate transaminase (isomerizing)
COORDINATES: similar to AA sequence:RefSeq:WP_004577781.1
COORDINATES: similar to AA sequence:RefSeq:WP_009362627.1
GO:0003871 - 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO:0008652 - amino acid biosynthetic process [Evidence IEA]; GO:0009086 - methionine biosynthetic process [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_003320837.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF019872.2
COORDINATES: nucleotide motif:Rfam:14.4:RF00174
cobalamin riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF033545.0
COORDINATES: similar to AA sequence:RefSeq:WP_006324127.1
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014470719.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: protein motif:HMM:NF024241.2
COORDINATES: similar to AA sequence:RefSeq:WP_076611795.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003214934.1
COORDINATES: similar to AA sequence:RefSeq:WP_010332152.1
COORDINATES: protein motif:HMM:NF025768.2
COORDINATES: protein motif:HMM:NF015638.2
COORDINATES: similar to AA sequence:RefSeq:WP_015865168.1
COORDINATES: protein motif:HMM:NF014717.2
COORDINATES: similar to AA sequence:RefSeq:WP_008881588.1
COORDINATES: similar to AA sequence:RefSeq:WP_015373947.1
COORDINATES: similar to AA sequence:RefSeq:WP_009362394.1
cell wall-active antibiotics response protein LiaF
COORDINATES: similar to AA sequence:RefSeq:WP_019416555.1
COORDINATES: similar to AA sequence:RefSeq:WP_015373952.1
COORDINATES: similar to AA sequence:RefSeq:WP_006322497.1
COORDINATES: similar to AA sequence:RefSeq:WP_003247697.1
COORDINATES: nucleotide motif:Rfam:14.4:RF00379
cyclic di-AMP (ydaO/yuaA leader) riboswitch senses the signaling molecule cyclic di-AMP; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_020278933.1
COORDINATES: similar to AA sequence:RefSeq:WP_003247702.1
GO:0003674 - molecular_function [Evidence IEA]
GO:0030436 - asexual sporulation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003247704.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008881895.1
COORDINATES: similar to AA sequence:RefSeq:WP_020754796.1
COORDINATES: similar to AA sequence:RefSeq:WP_013146155.1
COORDINATES: similar to AA sequence:RefSeq:WP_013523110.1
COORDINATES: similar to AA sequence:RefSeq:WP_011230222.1
uberolysin/carnocyclin family circular bacteriocin
COORDINATES: similar to AA sequence:RefSeq:WP_013146158.1
COORDINATES: similar to AA sequence:RefSeq:WP_015863990.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012685998.1
GO:0050511 - undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase activity [Evidence IEA]
undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_012748954.1
polysaccharide deacetylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013522795.1
COORDINATES: similar to AA sequence:RefSeq:WP_011229732.1
COORDINATES: similar to AA sequence:RefSeq:WP_019416575.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0008716 - D-alanine-D-alanine ligase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013144040.1
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
COORDINATES: similar to AA sequence:RefSeq:WP_015864091.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194681.1
COORDINATES: protein motif:HMM:NF013827.2
rhomboid family intramembrane serine protease
COORDINATES: similar to AA sequence:RefSeq:WP_011983363.1
GO:0008897 - holo-[acyl-carrier-protein] synthase activity [Evidence IEA]
GO:0008610 - lipid biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014194683.1
outer membrane lipoprotein carrier protein LolA
COORDINATES: similar to AA sequence:RefSeq:WP_012748964.1
GO:0008784 - alanine racemase activity [Evidence IEA]
GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013144044.1
COORDINATES: similar to AA sequence:RefSeq:NP_388347.1
type II toxin-antitoxin system endoribonuclease NdoA
COORDINATES: similar to AA sequence:RefSeq:WP_011886670.1
COORDINATES: similar to AA sequence:RefSeq:WP_012748966.1
COORDINATES: similar to AA sequence:RefSeq:WP_018664749.1
16S ribosomal RNA rRNA prediction is too short