Anoxybacillus amylolyticus strain DSM 15939 plasmid pDSM15939_1, complete sequence.
Bacteria; Bacillota; Bacilli; Bacillales; Bacillaceae; Anoxybacillus.
Anoxybacillus amylolyticus sp. nov., a thermophilic amylase producing bacterium isolated from Mount Rittmann (Antarctica)
Submitted (27-APR-2016) Bioscience, Los Alamos National Laboratory, PO Box 1663, Los Alamos, NM 87545, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP015439.1.\nSource bacteria/DNA available from Dr. Pilar E. Junier.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: DEC-2015\nAssembly Method :: HGAP v. unspecified\nGenome Coverage :: 158x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/23/2023 05:34:40\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,342\nCDSs (total) :: 3,234\nGenes (coding) :: 3,138\nCDSs (with protein) :: 3,138\nGenes (RNA) :: 108\nrRNAs :: 7, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 7, 7 (5S, 16S, 23S)\ntRNAs :: 82\nncRNAs :: 5\nPseudo Genes (total) :: 96\nCDSs (without protein) :: 96\nPseudo Genes (ambiguous residues) :: 0 of 96\nPseudo Genes (frameshifted) :: 32 of 96\nPseudo Genes (incomplete) :: 69 of 96\nPseudo Genes (internal stop) :: 31 of 96\nPseudo Genes (multiple problems) :: 28 of 96\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Anoxybacillus amylolyticus
COORDINATES: similar to AA sequence:RefSeq:WP_013522756.1
GO:0004803 - transposase activity [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012422.2
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
LuxR C-terminal-related transcriptional regulator
COORDINATES: protein motif:HMM:NF025030.2
COORDINATES: protein motif:HMM:TIGR04405.1
sporulation killing factor system integral membrane protein
COORDINATES: protein motif:HMM:NF012235.2
COORDINATES: protein motif:HMM:NF014566.2
CPBP family intramembrane metalloprotease
COORDINATES: protein motif:HMM:TIGR04403.1
sporulation killing factor system radical SAM maturase
COORDINATES: similar to AA sequence:RefSeq:WP_009966416.1
COORDINATES: similar to AA sequence:RefSeq:WP_003396534.1
COORDINATES: similar to AA sequence:RefSeq:WP_008881884.1
COORDINATES: similar to AA sequence:RefSeq:WP_020756635.1
COORDINATES: similar to AA sequence:RefSeq:WP_012574242.1
GO:0008299 - isoprenoid biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012574224.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008880225.1
COORDINATES: similar to AA sequence:RefSeq:WP_000792081.1
type II CAAX endopeptidase family protein
COORDINATES: protein motif:HMM:NF013245.2
COORDINATES: similar to AA sequence:RefSeq:WP_010865109.1
COORDINATES: protein motif:HMM:NF025394.2
thiopeptide-type bacteriocin biosynthesis protein
COORDINATES: protein motif:HMM:NF016615.2
COORDINATES: protein motif:HMM:NF017239.2
PqqD family peptide modification chaperone
COORDINATES: protein motif:HMM:NF033482.1
COORDINATES: similar to AA sequence:RefSeq:WP_002195916.1
COORDINATES: similar to AA sequence:RefSeq:WP_014095555.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:TIGR03605.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03604.1
COORDINATES: similar to AA sequence:RefSeq:WP_018665538.1
COORDINATES: similar to AA sequence:RefSeq:WP_007083472.1
COORDINATES: protein motif:HMM:NF017528.2
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: similar to AA sequence:RefSeq:WP_007083470.1
GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]; GO:0046983 - protein dimerization activity [Evidence IEA]
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015374613.1
COORDINATES: protein motif:HMM:NF033545.0
COORDINATES: protein motif:HMM:NF024940.2
COORDINATES: similar to AA sequence:RefSeq:WP_019716250.1
COORDINATES: protein motif:HMM:NF026883.2
polymorphic toxin type 8 domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012575975.1
COORDINATES: similar to AA sequence:RefSeq:WP_015864091.1
COORDINATES: similar to AA sequence:RefSeq:WP_015863950.1
COORDINATES: similar to AA sequence:RefSeq:WP_012820599.1
COORDINATES: similar to AA sequence:RefSeq:WP_015864753.1
GO:0009328 - phenylalanine-tRNA ligase complex [Evidence IEA]
GO:0004826 - phenylalanine-tRNA ligase activity [Evidence IEA]
GO:0006432 - phenylalanyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015864754.1
phenylalanine--tRNA ligase subunit alpha
COORDINATES: nucleotide motif:Rfam:14.4:RF00230
T-box leader; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_004889109.1
COORDINATES: similar to AA sequence:RefSeq:WP_011232186.1
COORDINATES: similar to AA sequence:RefSeq:WP_003248696.1
COORDINATES: similar to AA sequence:RefSeq:WP_003397836.1
COORDINATES: similar to AA sequence:RefSeq:WP_017437227.1
GO:0019843 - rRNA binding [Evidence IEA]; GO:0003735 - structural constituent of ribosome [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:NP_390764.1
GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]; GO:0000315 - organellar large ribosomal subunit [Evidence IEA]
GO:0003735 - structural constituent of ribosome [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015864764.1
GO:0003743 - translation initiation factor activity [Evidence IEA]
GO:0006413 - translational initiation [Evidence IEA]
COORDINATES: nucleotide motif:Rfam:14.4:RF00558
ribosomal protein L20 leader region; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_009361820.1
GO:0004829 - threonine-tRNA ligase activity [Evidence IEA]
GO:0006435 - threonyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003248685.1
GO:0003674 - molecular_function [Evidence IEA]
GO:0030436 - asexual sporulation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003248684.1
COORDINATES: similar to AA sequence:RefSeq:WP_015864768.1
replication initiation and membrane attachment family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008880844.1
GO:0140110 - transcription regulator activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008880845.1
COORDINATES: similar to AA sequence:RefSeq:WP_011232199.1
GO:0004014 - adenosylmethionine decarboxylase activity [Evidence IEA]
GO:0008295 - spermidine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011232200.1
GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]
GO:0006006 - glucose metabolic process [Evidence IEA]
glyceraldehyde-3-phosphate dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_015864772.1
GO:0004140 - dephospho-CoA kinase activity [Evidence IEA]
GO:0015937 - coenzyme A biosynthetic process [Evidence IEA]
Dephospho-CoA kinase (CoaE) performs the final step in coenzyme A biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015375584.1
GO:0008534 - oxidized purine nucleobase lesion DNA N-glycosylase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013144518.1
GO:0008408 - 3'-5' exonuclease activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
GO:0006261 - DNA-templated DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015864775.1
COORDINATES: similar to AA sequence:RefSeq:WP_009361832.1
COORDINATES: similar to AA sequence:RefSeq:WP_000335044.1
RNA-guided endonuclease TnpB family protein
COORDINATES: protein motif:HMM:NF017416.2
COORDINATES: similar to AA sequence:RefSeq:WP_020754699.1
GO:0003964 - RNA-directed DNA polymerase activity [Evidence IEA]
GO:0000373 - Group II intron splicing [Evidence IEA]
group II intron reverse transcriptase/maturase
COORDINATES: protein motif:HMM:NF033551.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011232207.1
MaoC/PaaZ C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011232208.1
GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013400244.1
GO:0004450 - isocitrate dehydrogenase (NADP+) activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0051287 - NAD binding [Evidence IEA]
GO:0006099 - tricarboxylic acid cycle [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008880857.1
GO:0046912 - acyltransferase activity, acyl groups converted into alkyl on transfer [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015375587.1
COORDINATES: similar to AA sequence:RefSeq:WP_006320868.1
sporulation integral membrane protein YtvI
COORDINATES: similar to AA sequence:RefSeq:WP_015864784.1
COORDINATES: similar to AA sequence:RefSeq:WP_006320860.1
GO:0004743 - pyruvate kinase activity [Evidence IEA]
GO:0006096 - glycolytic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:NP_390797.1
COORDINATES: similar to AA sequence:RefSeq:WP_003248654.1
GO:0009317 - acetyl-CoA carboxylase complex [Evidence IEA]
GO:0003989 - acetyl-CoA carboxylase activity [Evidence IEA]
GO:0006633 - fatty acid biosynthetic process [Evidence IEA]
acetyl-CoA carboxylase carboxyl transferase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_015375591.1
acetyl-CoA carboxylase, carboxyltransferase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_003248651.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003355625.1
GO:0008408 - 3'-5' exonuclease activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006637983.1
COORDINATES: similar to AA sequence:RefSeq:WP_003248646.1
COORDINATES: similar to AA sequence:RefSeq:WP_003353795.1
COORDINATES: similar to AA sequence:RefSeq:WP_017437261.1
bifunctional oligoribonuclease/PAP phosphatase NrnA
COORDINATES: similar to AA sequence:RefSeq:WP_003248644.1
COORDINATES: similar to AA sequence:RefSeq:WP_020756778.1
COORDINATES: similar to AA sequence:RefSeq:WP_012576221.1
COORDINATES: similar to AA sequence:RefSeq:WP_020424500.1
COORDINATES: similar to AA sequence:RefSeq:WP_013524310.1
COORDINATES: similar to AA sequence:RefSeq:WP_003248639.1
COORDINATES: similar to AA sequence:RefSeq:WP_013400238.1
COORDINATES: similar to AA sequence:RefSeq:WP_013876461.1
COORDINATES: similar to AA sequence:RefSeq:WP_013876460.1
GO:0004056 - argininosuccinate lyase activity [Evidence IEA]
GO:0042450 - arginine biosynthetic process via ornithine [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003248633.1
GO:0004055 - argininosuccinate synthase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
GO:0006526 - arginine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004889049.1
COORDINATES: similar to AA sequence:RefSeq:WP_004438899.1
MogA/MoaB family molybdenum cofactor biosynthesis protein
COORDINATES: protein motif:HMM:NF025675.2
COORDINATES: similar to AA sequence:RefSeq:WP_013524339.1
COORDINATES: similar to AA sequence:RefSeq:WP_013524340.1
COORDINATES: similar to AA sequence:RefSeq:WP_011232261.1
GO:0016684 - oxidoreductase activity, acting on peroxide as acceptor [Evidence IEA]; GO:0008379 - thioredoxin peroxidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017434955.1
GO:0005575 - cellular_component [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003248621.1
COORDINATES: similar to AA sequence:RefSeq:WP_020278075.1
COORDINATES: similar to AA sequence:RefSeq:WP_017434952.1
GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
GO:0006465 - signal peptide processing [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011232266.1
GO:0003951 - NAD+ kinase activity [Evidence IEA]
GO:0019674 - NAD metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003248617.1
COORDINATES: similar to AA sequence:RefSeq:WP_011232268.1
alpha/beta-type small acid-soluble spore protein
COORDINATES: similar to AA sequence:RefSeq:WP_017434948.1
GO:0003824 - catalytic activity [Evidence IEA]
GO:0009228 - thiamine biosynthetic process [Evidence IEA]; GO:0006400 - tRNA modification [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015864816.1
COORDINATES: similar to AA sequence:RefSeq:WP_010678437.1
COORDINATES: similar to AA sequence:RefSeq:WP_013876447.1
GO:0004401 - histidinol-phosphatase activity [Evidence IEA]
GO:0000105 - histidine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013400228.1
COORDINATES: similar to AA sequence:RefSeq:WP_003248606.1
sensor domain-containing diguanylate cyclase
COORDINATES: similar to AA sequence:RefSeq:NP_390844.1
GO:0015935 - small ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013400227.1
GO:0004831 - tyrosine-tRNA ligase activity [Evidence IEA]
GO:0006437 - tyrosyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017434940.1
transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017434939.1
COORDINATES: similar to AA sequence:RefSeq:WP_012574168.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019416654.1
COORDINATES: similar to AA sequence:RefSeq:WP_003398368.1
COORDINATES: similar to AA sequence:RefSeq:WP_015375640.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0001228 - DNA-binding transcription activator activity, RNA polymerase II-specific [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010678451.1
GO:0009073 - aromatic amino acid family biosynthetic process [Evidence IEA]; GO:0046417 - chorismate metabolic process [Evidence IEA]
bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase
COORDINATES: similar to AA sequence:RefSeq:WP_019154881.1
COORDINATES: similar to AA sequence:RefSeq:WP_003248587.1
GO:0006790 - sulfur compound metabolic process [Evidence IEA]
bacillithiol system redox-active protein YtxJ
COORDINATES: similar to AA sequence:RefSeq:WP_013400224.1
COORDINATES: similar to AA sequence:RefSeq:WP_015864833.1
COORDINATES: similar to AA sequence:RefSeq:WP_000654720.1
COORDINATES: similar to AA sequence:RefSeq:WP_015864834.1
GO:0008763 - UDP-N-acetylmuramate-L-alanine ligase activity [Evidence IEA]
GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010195427.1
COORDINATES: similar to AA sequence:RefSeq:WP_017434927.1
COORDINATES: similar to AA sequence:RefSeq:WP_013144448.1
COORDINATES: similar to AA sequence:RefSeq:WP_013400222.1
COORDINATES: similar to AA sequence:RefSeq:WP_019243910.1
COORDINATES: similar to AA sequence:RefSeq:WP_009671551.1
COORDINATES: similar to AA sequence:RefSeq:WP_015864840.1
COORDINATES: similar to AA sequence:RefSeq:WP_013876438.1
COORDINATES: similar to AA sequence:RefSeq:WP_013876437.1
COORDINATES: similar to AA sequence:RefSeq:WP_020756862.1
COORDINATES: similar to AA sequence:RefSeq:WP_015864844.1
GO:0008176 - tRNA (guanine-N7-)-methyltransferase activity [Evidence IEA]
GO:0006400 - tRNA modification [Evidence IEA]
tRNA (guanosine(46)-N7)-methyltransferase TrmB
COORDINATES: similar to AA sequence:RefSeq:WP_011232298.1
COORDINATES: similar to AA sequence:RefSeq:WP_015864846.1
COORDINATES: similar to AA sequence:RefSeq:WP_017434916.1
GO:0051060 - pullulanase activity [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009333354.1
nuclease-related domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013524376.1
GO:0008664 - 2'-5'-RNA ligase activity [Evidence IEA]
GO:0008033 - tRNA processing [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015864850.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015864851.1
GO:0016805 - dipeptidase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:NP_390880.1
COORDINATES: similar to AA sequence:RefSeq:WP_020278060.1
COORDINATES: similar to AA sequence:RefSeq:WP_013400218.1
COORDINATES: similar to AA sequence:RefSeq:WP_011232308.1
COORDINATES: similar to AA sequence:RefSeq:WP_019416637.1
COORDINATES: similar to AA sequence:RefSeq:WP_009333366.1
COORDINATES: similar to AA sequence:RefSeq:WP_014457977.1
rhodanese-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:NP_390910.1
GO:0004823 - leucine-tRNA ligase activity [Evidence IEA]
GO:0006429 - leucyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004888963.1
COORDINATES: similar to AA sequence:RefSeq:WP_015864862.1
COORDINATES: similar to AA sequence:RefSeq:WP_008880948.1
GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
This family includes YhcC from E. coli K-12, an uncharacterized radical SAM protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013400214.1
COORDINATES: similar to AA sequence:RefSeq:WP_004888959.1
tetraprenyl-beta-curcumene synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_003248527.1
COORDINATES: similar to AA sequence:RefSeq:WP_015864867.1
COORDINATES: similar to AA sequence:RefSeq:WP_015864868.1
COORDINATES: similar to AA sequence:RefSeq:WP_009361425.1
GO:0004066 - asparagine synthase (glutamine-hydrolyzing) activity [Evidence IEA]
GO:0006529 - asparagine biosynthetic process [Evidence IEA]
asparagine synthase (glutamine-hydrolyzing)
COORDINATES: similar to AA sequence:RefSeq:WP_015864870.1
GO:0004478 - methionine adenosyltransferase activity [Evidence IEA]
GO:0006556 - S-adenosylmethionine biosynthetic process [Evidence IEA]
COORDINATES: nucleotide motif:Rfam:14.4:RF00162
SAM riboswitch class I; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_008880953.1
GO:0004612 - phosphoenolpyruvate carboxykinase (ATP) activity [Evidence IEA]
GO:0006094 - gluconeogenesis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003324952.1
COORDINATES: similar to AA sequence:RefSeq:WP_011229486.1
COORDINATES: protein motif:HMM:NF012318.2
trypsin-like peptidase domain-containing protein
COORDINATES: protein motif:HMM:NF020650.2
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_020153761.1
COORDINATES: similar to AA sequence:RefSeq:WP_006836842.1
COORDINATES: similar to AA sequence:RefSeq:WP_019417375.1
COORDINATES: similar to AA sequence:RefSeq:WP_013876426.1
COORDINATES: similar to AA sequence:RefSeq:WP_012574362.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194747.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194746.1
COORDINATES: similar to AA sequence:RefSeq:WP_007787311.1
COORDINATES: similar to AA sequence:RefSeq:WP_019417368.1
COORDINATES: similar to AA sequence:RefSeq:WP_019417367.1
COORDINATES: similar to AA sequence:RefSeq:WP_019417366.1
COORDINATES: similar to AA sequence:RefSeq:WP_019417365.1
LysM peptidoglycan-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019417364.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194739.1
COORDINATES: similar to AA sequence:RefSeq:WP_019417361.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194737.1
phage tail sheath C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019417359.1
COORDINATES: similar to AA sequence:RefSeq:WP_019417358.1
COORDINATES: similar to AA sequence:RefSeq:WP_019417357.1
COORDINATES: similar to AA sequence:RefSeq:WP_019417356.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194732.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194731.1
COORDINATES: similar to AA sequence:RefSeq:WP_000261370.1
GO:0019028 - viral capsid [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014194729.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194727.1
GO:0044423 - virion component [Evidence IEA]
GO:0016032 - viral process [Evidence IEA]; GO:0019068 - virion assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014194726.1
GO:0046798 - viral portal complex [Evidence IEA]
GO:0005198 - structural molecule activity [Evidence IEA]
GO:0051027 - DNA transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020279145.1
PBSX family phage terminase large subunit
COORDINATES: similar to AA sequence:RefSeq:WP_014194724.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194723.1
COORDINATES: similar to AA sequence:RefSeq:WP_001153115.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_012574343.1
GO:0003896 - DNA primase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012574342.1
COORDINATES: similar to AA sequence:RefSeq:WP_016092009.1
COORDINATES: similar to AA sequence:RefSeq:WP_012574339.1
COORDINATES: protein motif:HMM:NF016896.2
COORDINATES: similar to AA sequence:RefSeq:WP_012574337.1
COORDINATES: similar to AA sequence:RefSeq:WP_012574336.1
COORDINATES: similar to AA sequence:RefSeq:WP_010780030.1
COORDINATES: similar to AA sequence:RefSeq:WP_012574334.1
COORDINATES: similar to AA sequence:RefSeq:WP_017435114.1
COORDINATES: similar to AA sequence:RefSeq:WP_003495358.1
COORDINATES: similar to AA sequence:RefSeq:WP_012574332.1
COORDINATES: similar to AA sequence:RefSeq:WP_019417318.1
COORDINATES: similar to AA sequence:RefSeq:WP_015985635.1
COORDINATES: similar to AA sequence:RefSeq:WP_019417313.1
COORDINATES: similar to AA sequence:RefSeq:WP_008701411.1
COORDINATES: similar to AA sequence:RefSeq:WP_019417310.1
phage antirepressor KilAC domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016062781.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_013876367.1
GO:0006282 - regulation of DNA repair [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: protein motif:HMM:NF023376.2
COORDINATES: protein motif:HMM:NF021560.2
COORDINATES: similar to AA sequence:RefSeq:WP_013524454.1
COORDINATES: similar to AA sequence:RefSeq:WP_017434885.1
COORDINATES: similar to AA sequence:RefSeq:WP_013876364.1
COORDINATES: similar to AA sequence:RefSeq:WP_003248506.1
COORDINATES: similar to AA sequence:RefSeq:WP_015375666.1
GO:0017111 - ribonucleoside triphosphate phosphatase activity [Evidence IEA]
GO:0006139 - nucleobase-containing compound metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006321927.1
sodium-dependent bicarbonate transport family permease
COORDINATES: similar to AA sequence:RefSeq:WP_018130923.1
COORDINATES: similar to AA sequence:RefSeq:WP_003248503.1
COORDINATES: similar to AA sequence:RefSeq:WP_017434880.1
COORDINATES: similar to AA sequence:RefSeq:WP_019154939.1
COORDINATES: similar to AA sequence:RefSeq:NP_390945.1
COORDINATES: similar to AA sequence:RefSeq:WP_007086500.1
membrane protein insertion efficiency factor YidD
COORDINATES: similar to AA sequence:RefSeq:WP_016765772.1
COORDINATES: similar to AA sequence:RefSeq:WP_003248494.1
GO:0046872 - metal ion binding [Evidence IEA]
zinc ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011232338.1
beta-propeller fold lactonase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_003248490.1
COORDINATES: similar to AA sequence:RefSeq:WP_004888935.1
COORDINATES: similar to AA sequence:RefSeq:WP_015864886.1
COORDINATES: similar to AA sequence:RefSeq:WP_015731616.1
COORDINATES: similar to AA sequence:RefSeq:WP_020756402.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0008756 - o-succinylbenzoate-CoA ligase activity [Evidence IEA]
GO:0009234 - menaquinone biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016938465.1
GO:0008935 - 1,4-dihydroxy-2-naphthoyl-CoA synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019417291.1
GO:0070205 - 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase activity [Evidence IEA]
2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase
COORDINATES: similar to AA sequence:RefSeq:WP_009361644.1
GO:0070204 - 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1- carboxylic-acid synthase activity [Evidence IEA]
2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase
COORDINATES: similar to AA sequence:RefSeq:WP_019417289.1
GO:0008909 - isochorismate synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003397733.1
GO:0046428 - 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity [Evidence IEA]
1,4-dihydroxy-2-naphthoate polyprenyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_017434866.1
COORDINATES: similar to AA sequence:RefSeq:WP_011232351.1
COORDINATES: similar to AA sequence:RefSeq:WP_008880980.1
glycogen/starch/alpha-glucan phosphorylase
COORDINATES: similar to AA sequence:RefSeq:WP_003248468.1
GO:0004373 - glycogen (starch) synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008880982.1
GO:0016779 - nucleotidyltransferase activity [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004439157.1
GO:0008878 - glucose-1-phosphate adenylyltransferase activity [Evidence IEA]
GO:0005978 - glycogen biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011888029.1
GO:0003844 - 1,4-alpha-glucan branching enzyme activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003248462.1
cation diffusion facilitator family transporter
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: nucleotide motif:Rfam:14.4:RF00001
Derived by automated computational analysis using gene prediction method: cmsearch.
23S ribosomal RNA rRNA prediction is too short