Rhizobium etli strain NXC12 plasmid pRetNXC12d, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.
Complete genome sequences of Rhizobium genomic linages associated to common bean (phaseolus vulgaris)
Submitted (21-APR-2017) Programa de Genomica Evolutiva, Centro de Ciencias Genomicas / UNAM, Av. Universidad s/n, Cuernavaca, Morelos 62210, Mexico
REFSEQ INFORMATION: The reference sequence is identical to\nCP020910.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Newbler v. 2.5.3; SPAdes v. 2.5.1;\n Velvet v. 1.1.06; Consed v. 23\nReference-guided Assembly :: GCA_000092045.1\nGenome Coverage :: 400x\nSequencing Technology :: 454 and Illumina Hiseq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/24/2023 17:46:44\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 6,540\nCDSs (total) :: 6,477\nGenes (coding) :: 6,201\nCDSs (with protein) :: 6,201\nGenes (RNA) :: 63\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 50\nncRNAs :: 4\nPseudo Genes (total) :: 276\nCDSs (without protein) :: 276\nPseudo Genes (ambiguous residues) :: 0 of 276\nPseudo Genes (frameshifted) :: 168 of 276\nPseudo Genes (incomplete) :: 175 of 276\nPseudo Genes (internal stop) :: 35 of 276\nPseudo Genes (multiple problems) :: 89 of 276\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_007539569.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_016737363.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018326374.1
COORDINATES: protein motif:HMM:NF037472.2
COORDINATES: protein motif:HMM:NF033580.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012557217.1
COORDINATES: similar to AA sequence:RefSeq:WP_012557218.1
COORDINATES: similar to AA sequence:RefSeq:WP_018115269.1
COORDINATES: similar to AA sequence:RefSeq:WP_004111731.1
Ref family recombination enhancement nuclease
COORDINATES: similar to AA sequence:RefSeq:WP_011970475.1
COORDINATES: similar to AA sequence:RefSeq:WP_011970474.1
COORDINATES: similar to AA sequence:RefSeq:WP_016733815.1
Crp/Fnr family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_016736083.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611443.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003501080.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF012422.2
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017183371.1
COORDINATES: protein motif:HMM:NF017885.2
COORDINATES: similar to AA sequence:RefSeq:WP_007539843.1
COORDINATES: similar to AA sequence:RefSeq:WP_016736597.1
COORDINATES: similar to AA sequence:RefSeq:WP_015341969.1
COORDINATES: similar to AA sequence:RefSeq:WP_004669694.1
sugar ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_004119959.1
LLM class flavin-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_003524138.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
GO:0006790 - sulfur compound metabolic process [Evidence IEA]
SfnB family sulfur acquisition oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_004119965.1
COORDINATES: similar to AA sequence:RefSeq:WP_007599431.1
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]; GO:0009897 - external side of plasma membrane [Evidence IEA]; GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]; GO:0005488 - binding [Evidence IEA]
GO:0042918 - alkanesulfonate transport [Evidence IEA]
aliphatic sulfonate ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_019199526.1
COORDINATES: similar to AA sequence:RefSeq:WP_012649110.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018238355.1
COORDINATES: similar to AA sequence:RefSeq:WP_004669689.1
GO:0008726 - alkanesulfonate monooxygenase activity [Evidence IEA]; GO:0010181 - FMN binding [Evidence IEA]
FMNH2-dependent alkanesulfonate monooxygenase
COORDINATES: similar to AA sequence:RefSeq:WP_003554070.1
COORDINATES: protein motif:HMM:NF013890.2
GO:0005515 - protein binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018517447.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019565581.1
COORDINATES: similar to AA sequence:RefSeq:WP_003519380.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_017992642.1
GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012759222.1
GO:0003870 - 5-aminolevulinate synthase activity [Evidence IEA]
GO:0006783 - heme biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003551417.1
autoinducer binding domain-containing protein
COORDINATES: protein motif:HMM:NF013676.2
COORDINATES: similar to AA sequence:RefSeq:WP_011427378.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007755480.1
COORDINATES: similar to AA sequence:RefSeq:WP_004675974.1
COORDINATES: similar to AA sequence:RefSeq:WP_004675975.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011427313.1
COORDINATES: similar to AA sequence:RefSeq:WP_007539334.1
COORDINATES: similar to AA sequence:RefSeq:WP_004125955.1
GO:0016410 - N-acyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004125873.1
COORDINATES: similar to AA sequence:RefSeq:WP_010974358.1
COORDINATES: similar to AA sequence:RefSeq:WP_011930655.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014989982.1
GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007636999.1
COORDINATES: similar to AA sequence:RefSeq:WP_018328738.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010930118.1
GO:0047834 - D-threo-aldose 1-dehydrogenase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011749831.1
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: protein motif:HMM:TIGR03897.1
GO:0018081 - peptide cross-linking via lanthionine or 3-methyl-lanthionine [Evidence IEA]; GO:0018193 - peptidyl-amino acid modification [Evidence IEA]; GO:0009403 - toxin biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011970830.1
COORDINATES: protein motif:HMM:TIGR01488.1
GO:0016787 - hydrolase activity [Evidence IEA]
GO:0008152 - metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076611552.1
COORDINATES: similar to AA sequence:RefSeq:WP_011504961.1
COORDINATES: similar to AA sequence:RefSeq:WP_007753860.1
COORDINATES: similar to AA sequence:RefSeq:WP_003584197.1
COORDINATES: similar to AA sequence:RefSeq:WP_007792578.1
COORDINATES: similar to AA sequence:RefSeq:WP_016558601.1
COORDINATES: similar to AA sequence:RefSeq:WP_017997555.1
COORDINATES: similar to AA sequence:RefSeq:WP_007758851.1
COORDINATES: similar to AA sequence:RefSeq:WP_004120011.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611132.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014531967.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017956509.1
COORDINATES: similar to AA sequence:RefSeq:WP_007827581.1
COORDINATES: similar to AA sequence:RefSeq:WP_011427422.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011053406.1
COORDINATES: similar to AA sequence:RefSeq:WP_003551594.1
COORDINATES: similar to AA sequence:RefSeq:WP_003548532.1
COORDINATES: similar to AA sequence:RefSeq:WP_004856859.1
COORDINATES: similar to AA sequence:RefSeq:WP_018097650.1
COORDINATES: similar to AA sequence:RefSeq:WP_008530375.1
COORDINATES: similar to AA sequence:RefSeq:WP_008530376.1
ribulose-bisphosphate carboxylase large subunit family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008530378.1
four-carbon acid sugar kinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008530383.1
COORDINATES: similar to AA sequence:RefSeq:WP_012947617.1
COORDINATES: protein motif:HMM:NF012235.2
sugar ABC transporter ATP-binding protein
COORDINATES: protein motif:HMM:NF014684.2
COORDINATES: protein motif:HMM:NF024799.2
substrate-binding domain-containing protein
COORDINATES: protein motif:HMM:NF016115.2
COORDINATES: protein motif:HMM:NF019349.2
COORDINATES: similar to AA sequence:RefSeq:WP_011841104.1
branched-chain amino acid ABC transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_011907966.1
COORDINATES: similar to AA sequence:RefSeq:WP_013067578.1
COORDINATES: similar to AA sequence:RefSeq:WP_002720081.1
COORDINATES: similar to AA sequence:RefSeq:WP_008028090.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_013959400.1
LysR substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016558588.1
COORDINATES: similar to AA sequence:RefSeq:WP_004375867.1
COORDINATES: similar to AA sequence:RefSeq:WP_008919278.1
pyridoxal phosphate-dependent aminotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_016558582.1
COORDINATES: similar to AA sequence:RefSeq:WP_016558581.1
COORDINATES: similar to AA sequence:RefSeq:WP_009771148.1
COORDINATES: similar to AA sequence:RefSeq:WP_006134604.1
COORDINATES: similar to AA sequence:RefSeq:WP_012489539.1
COORDINATES: protein motif:HMM:NF017934.2
COORDINATES: similar to AA sequence:RefSeq:WP_016736596.1
COORDINATES: similar to AA sequence:RefSeq:WP_010023496.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_008532881.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612266.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612145.1
COORDINATES: similar to AA sequence:RefSeq:WP_003572688.1
COORDINATES: protein motif:HMM:NF024242.2
COORDINATES: similar to AA sequence:RefSeq:WP_016558712.1
COORDINATES: similar to AA sequence:RefSeq:WP_018483041.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003591674.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_010967462.1
GO:0004360 - glutamine-fructose-6-phosphate transaminase (isomerizing) activity [Evidence IEA]
GO:0006040 - amino sugar metabolic process [Evidence IEA]; GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
glutamine--fructose-6-phosphate transaminase (isomerizing)
COORDINATES: similar to AA sequence:RefSeq:WP_016558684.1
COORDINATES: similar to AA sequence:RefSeq:WP_016558685.1
COORDINATES: similar to AA sequence:RefSeq:WP_016558686.1
COORDINATES: similar to AA sequence:RefSeq:WP_016552325.1
COORDINATES: similar to AA sequence:RefSeq:WP_018495751.1
microcin C ABC transporter permease YejB
COORDINATES: similar to AA sequence:RefSeq:WP_018447985.1
COORDINATES: similar to AA sequence:RefSeq:WP_018098125.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011654681.1
lipocalin-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018240640.1
DPP IV N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012553005.1
COORDINATES: similar to AA sequence:RefSeq:WP_011053284.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_008838424.1
COORDINATES: similar to AA sequence:RefSeq:WP_014857614.1
COORDINATES: protein motif:HMM:NF024698.2
COORDINATES: similar to AA sequence:RefSeq:WP_003298816.1
Catalyzes the first step in the glyoxalate cycle, which converts lipids to carbohydrates; frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013533394.1
COORDINATES: similar to AA sequence:RefSeq:WP_018236217.1
COORDINATES: similar to AA sequence:RefSeq:WP_004128902.1
COORDINATES: similar to AA sequence:RefSeq:WP_018901845.1
COORDINATES: similar to AA sequence:RefSeq:WP_016558771.1
GO:0008410 - CoA-transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002722857.1
COORDINATES: similar to AA sequence:RefSeq:WP_016558773.1
COORDINATES: similar to AA sequence:RefSeq:WP_018517533.1
aspartate aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007529656.1
COORDINATES: protein motif:HMM:NF003814.0
COORDINATES: similar to AA sequence:RefSeq:WP_015888029.1
COORDINATES: similar to AA sequence:RefSeq:WP_004668655.1
biotin carboxylase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007529670.1
COORDINATES: protein motif:HMM:NF024777.2
LamG-like jellyroll fold domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008533971.1
COORDINATES: similar to AA sequence:RefSeq:WP_003584387.1
COORDINATES: similar to AA sequence:RefSeq:WP_011970904.1
COORDINATES: similar to AA sequence:RefSeq:WP_003584385.1
COORDINATES: similar to AA sequence:RefSeq:WP_012169816.1
COORDINATES: similar to AA sequence:RefSeq:WP_009488605.1
GO:0003964 - RNA-directed DNA polymerase activity [Evidence IEA]
GO:0000373 - Group II intron splicing [Evidence IEA]
group II intron reverse transcriptase/maturase
COORDINATES: similar to AA sequence:RefSeq:WP_004675973.1
IS66 family transposase zinc-finger binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011970376.1
COORDINATES: similar to AA sequence:RefSeq:WP_011907978.1
COORDINATES: similar to AA sequence:RefSeq:WP_016558787.1
amino acid ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_019863592.1
COORDINATES: similar to AA sequence:RefSeq:WP_013533432.1
transporter substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004128891.1
COORDINATES: similar to AA sequence:RefSeq:WP_013533431.1
COORDINATES: similar to AA sequence:RefSeq:WP_004128884.1
COORDINATES: similar to AA sequence:RefSeq:WP_010974137.1
Lrp/AsnC family transcriptional regulator
COORDINATES: protein motif:HMM:NF012766.2
COORDINATES: protein motif:HMM:NF013486.2
aminopeptidase P family N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007008958.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611908.1
COORDINATES: similar to AA sequence:RefSeq:WP_004672113.1
COORDINATES: similar to AA sequence:RefSeq:WP_004128874.1
GO:0051920 - peroxiredoxin activity [Evidence IEA]
carboxymuconolactone decarboxylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013850079.1
COORDINATES: similar to AA sequence:RefSeq:WP_004128868.1
MurR/RpiR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_010913652.1
acetyl-CoA carboxylase biotin carboxylase subunit family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011053360.1
COORDINATES: similar to AA sequence:RefSeq:WP_016558818.1
COORDINATES: similar to AA sequence:RefSeq:WP_016558819.1
GO:0033990 - ectoine synthase activity [Evidence IEA]
GO:0019491 - ectoine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010188285.1
transposase DNA-binding-containing protein
COORDINATES: protein motif:HMM:NF025652.2
COORDINATES: similar to AA sequence:RefSeq:WP_004128843.1
COORDINATES: similar to AA sequence:RefSeq:WP_004126151.1
COORDINATES: similar to AA sequence:RefSeq:WP_004126135.1
COORDINATES: similar to AA sequence:RefSeq:WP_014761245.1
COORDINATES: protein motif:HMM:NF017528.2
COORDINATES: similar to AA sequence:RefSeq:WP_028755357.1
COORDINATES: similar to AA sequence:RefSeq:WP_014989244.1
COORDINATES: similar to AA sequence:RefSeq:WP_014531097.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188732.1
COORDINATES: similar to AA sequence:RefSeq:WP_011053350.1
IS66-like element ISRel15 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_007879901.1
GO:0009279 - cell outer membrane [Evidence IEA]
GO:0015474 - autotransporter activity [Evidence IEA]
GO:0046819 - protein secretion by the type V secretion system [Evidence IEA]
autotransporter outer membrane beta-barrel domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018517052.1
hydrogenase expression/formation protein
COORDINATES: similar to AA sequence:RefSeq:WP_018517051.1
COORDINATES: similar to AA sequence:RefSeq:WP_011662673.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611960.1
COORDINATES: similar to AA sequence:RefSeq:WP_018116989.1
COORDINATES: similar to AA sequence:RefSeq:WP_016558415.1
COORDINATES: similar to AA sequence:RefSeq:WP_009991126.1
NifX-associated nitrogen fixation protein
COORDINATES: similar to AA sequence:RefSeq:WP_016737533.1
GO:0051540 - metal cluster binding [Evidence IEA]
GO:0009399 - nitrogen fixation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010913612.1
nitrogenase iron-molybdenum cofactor biosynthesis protein NifN
COORDINATES: similar to AA sequence:RefSeq:WP_007539040.1
nitrogenase iron-molybdenum cofactor biosynthesis protein NifE
COORDINATES: similar to AA sequence:RefSeq:WP_006331758.1
GO:0016612 - molybdenum-iron nitrogenase complex [Evidence IEA]
GO:0016163 - nitrogenase activity [Evidence IEA]
nitrogenase molybdenum-iron protein subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_018247185.1
nitrogenase molybdenum-iron protein alpha chain
COORDINATES: similar to AA sequence:RefSeq:WP_004675840.1
GO:0016611 - iron-iron nitrogenase complex [Evidence IEA]; GO:0016612 - molybdenum-iron nitrogenase complex [Evidence IEA]; GO:0016613 - vanadium-iron nitrogenase complex [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011654719.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654560.1
COORDINATES: similar to AA sequence:RefSeq:WP_012555901.1
radical SAM family RiPP maturation amino acid epimerase
COORDINATES: similar to AA sequence:RefSeq:WP_014529193.1
Nif11-like leader peptide family natural product precursor
COORDINATES: similar to AA sequence:RefSeq:WP_076611978.1
COORDINATES: similar to AA sequence:RefSeq:WP_016558430.1
COORDINATES: similar to AA sequence:RefSeq:WP_018240534.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636855.1
nuclear transport factor 2 family protein
COORDINATES: protein motif:HMM:NF018595.2
COORDINATES: similar to AA sequence:RefSeq:WP_008536557.1
COORDINATES: protein motif:HMM:NF013677.2
COORDINATES: similar to AA sequence:RefSeq:WP_010024976.1
COORDINATES: similar to AA sequence:RefSeq:WP_006699241.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875378.1
COORDINATES: similar to AA sequence:RefSeq:WP_018240649.1
COORDINATES: similar to AA sequence:RefSeq:WP_018240650.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875381.1
COORDINATES: similar to AA sequence:RefSeq:WP_018240652.1
sugar phosphate isomerase/epimerase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010875400.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875401.1
glycerophosphodiester phosphodiesterase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004126073.1
COORDINATES: similar to AA sequence:RefSeq:WP_004678547.1
GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009495345.1
GO:0030151 - molybdenum ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004678546.1
iron-sulfur cluster assembly accessory protein
COORDINATES: similar to AA sequence:RefSeq:WP_004126059.1
GO:0031071 - cysteine desulfurase activity [Evidence IEA]
GO:0006520 - amino acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008536550.1
nitrogenase stabilizing/protective protein NifW
COORDINATES: similar to AA sequence:RefSeq:WP_016558440.1
electron transfer flavoprotein subunit beta/FixA family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008536549.1
electron transfer flavoprotein subunit alpha/FixB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008536548.1
COORDINATES: similar to AA sequence:RefSeq:WP_011970923.1
COORDINATES: similar to AA sequence:RefSeq:WP_018247198.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0009399 - nitrogen fixation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
nif-specific transcriptional activator NifA
COORDINATES: similar to AA sequence:RefSeq:WP_011053432.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
nitrogenase cofactor biosynthesis protein NifB
COORDINATES: similar to AA sequence:RefSeq:WP_008536545.1
COORDINATES: similar to AA sequence:RefSeq:WP_018240574.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636888.1
COORDINATES: similar to AA sequence:RefSeq:WP_004678511.1
COORDINATES: similar to AA sequence:RefSeq:WP_016558522.1
COORDINATES: similar to AA sequence:RefSeq:WP_004671991.1
GO:0004400 - histidinol-phosphate transaminase activity [Evidence IEA]
GO:0000105 - histidine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018328735.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA]
sulfate adenylyltransferase subunit CysN
COORDINATES: similar to AA sequence:RefSeq:WP_015887285.1
GO:0004781 - sulfate adenylyltransferase (ATP) activity [Evidence IEA]
GO:0019419 - sulfate reduction [Evidence IEA]
sulfate adenylyltransferase subunit CysD
COORDINATES: similar to AA sequence:RefSeq:WP_018328737.1
COORDINATES: similar to AA sequence:RefSeq:WP_004125982.1
COORDINATES: similar to AA sequence:RefSeq:WP_003532845.1
COORDINATES: similar to AA sequence:RefSeq:WP_018328739.1
nodulation factor ABC transporter ATP-binding protein NodI
COORDINATES: similar to AA sequence:RefSeq:WP_018328740.1
GO:0003824 - catalytic activity [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004125970.1
GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IEA]
GO:0009877 - nodulation [Evidence IEA]; GO:0009312 - oligosaccharide biosynthetic process [Evidence IEA]
GO:0016757 - glycosyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018328743.1
COORDINATES: similar to AA sequence:RefSeq:WP_004671987.1
COORDINATES: similar to AA sequence:RefSeq:WP_004125935.1
COORDINATES: similar to AA sequence:RefSeq:WP_018247203.1
COORDINATES: protein motif:HMM:NF020466.2
COORDINATES: protein motif:HMM:NF024910.2
COORDINATES: protein motif:HMM:NF015983.2
GO:0003824 - catalytic activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003502794.1
GO:0008535 - respiratory chain complex IV assembly [Evidence IEA]
cbb3-type cytochrome oxidase assembly protein CcoS
COORDINATES: similar to AA sequence:RefSeq:WP_017996963.1
COORDINATES: similar to AA sequence:RefSeq:WP_016558464.1
GO:0005507 - copper ion binding [Evidence IEA]; GO:0009055 - electron transfer activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010875348.1
COORDINATES: similar to AA sequence:RefSeq:WP_018097536.1
COORDINATES: similar to AA sequence:RefSeq:WP_018240599.1
beta-ketoacyl-[acyl-carrier-protein] synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015004782.1
COORDINATES: similar to AA sequence:RefSeq:WP_011053449.1
GO:0051989 - coproporphyrinogen dehydrogenase activity [Evidence IEA]
GO:0006779 - porphyrin-containing compound biosynthetic process [Evidence IEA]
oxygen-independent coproporphyrinogen III oxidase
COORDINATES: protein motif:HMM:NF013431.2
COORDINATES: similar to AA sequence:RefSeq:WP_018068554.1
COORDINATES: similar to AA sequence:RefSeq:WP_018240577.1
COORDINATES: similar to AA sequence:RefSeq:WP_004126138.1
GO:0045303 - diaminobutyrate-2-oxoglutarate transaminase activity [Evidence IEA]
diaminobutyrate--2-oxoglutarate transaminase
COORDINATES: similar to AA sequence:RefSeq:WP_016558408.1
COORDINATES: similar to AA sequence:RefSeq:WP_012330260.1
GO:0008660 - 1-aminocyclopropane-1-carboxylate deaminase activity [Evidence IEA]
GO:0042217 - 1-aminocyclopropane-1-carboxylate catabolic process [Evidence IEA]
1-aminocyclopropane-1-carboxylate deaminase
COORDINATES: similar to AA sequence:RefSeq:WP_012489565.1
exopolysaccharide production repressor protein
COORDINATES: similar to AA sequence:RefSeq:WP_009762331.1
COORDINATES: similar to AA sequence:RefSeq:WP_009991124.1
COORDINATES: similar to AA sequence:RefSeq:WP_010009888.1
COORDINATES: similar to AA sequence:RefSeq:WP_019863284.1
COORDINATES: similar to AA sequence:RefSeq:WP_004673815.1
COORDINATES: similar to AA sequence:RefSeq:WP_012760201.1
COORDINATES: similar to AA sequence:RefSeq:WP_012489415.1
COORDINATES: similar to AA sequence:RefSeq:WP_014527713.1
COORDINATES: similar to AA sequence:RefSeq:WP_017958428.1
GO:0009228 - thiamine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020486300.1
GO:0016647 - oxidoreductase activity, acting on the CH-NH group of donors, oxygen as acceptor [Evidence IEA]
COORDINATES: nucleotide motif:Rfam:14.4:RF00059
TPP riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_003593951.1
COORDINATES: protein motif:HMM:NF020007.2
COORDINATES: similar to AA sequence:RefSeq:WP_009488473.1
nucleotidyl transferase AbiEii/AbiGii toxin family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007696114.1
HoxN/HupN/NixA family nickel/cobalt transporter
COORDINATES: similar to AA sequence:RefSeq:WP_018097464.1
COORDINATES: similar to AA sequence:RefSeq:WP_004120053.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612137.1
COORDINATES: similar to AA sequence:RefSeq:WP_011947222.1
COORDINATES: similar to AA sequence:RefSeq:WP_018234982.1
COORDINATES: similar to AA sequence:RefSeq:WP_012649063.1
COORDINATES: similar to AA sequence:RefSeq:WP_018098906.1
COORDINATES: similar to AA sequence:RefSeq:WP_018098907.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611992.1
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_076611367.1
COORDINATES: similar to AA sequence:RefSeq:WP_018480553.1
COORDINATES: similar to AA sequence:RefSeq:WP_011428060.1
COORDINATES: similar to AA sequence:RefSeq:WP_018071055.1
COORDINATES: similar to AA sequence:RefSeq:WP_003548916.1
GO:0016747 - acyltransferase activity, transferring groups other than amino-acyl groups [Evidence IEA]
GO:0019619 - 3,4-dihydroxybenzoate catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003564086.1
COORDINATES: similar to AA sequence:RefSeq:WP_004669675.1
COORDINATES: similar to AA sequence:RefSeq:WP_018497112.1
IclR family transcriptional regulator C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011428053.1
COORDINATES: similar to AA sequence:RefSeq:WP_011428052.1
COORDINATES: similar to AA sequence:RefSeq:WP_018246165.1
polysaccharide pyruvyl transferase family protein
COORDINATES: protein motif:HMM:NF012573.2
COORDINATES: similar to AA sequence:RefSeq:WP_018327356.1
COORDINATES: similar to AA sequence:RefSeq:WP_004112688.1
COORDINATES: similar to AA sequence:RefSeq:WP_007539331.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611858.1
COORDINATES: similar to AA sequence:RefSeq:WP_016558603.1
GO:0008236 - serine-type peptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013720.2
internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018325648.1
GO:0004488 - methylenetetrahydrofolate dehydrogenase (NADP+) activity [Evidence IEA]
tetrahydrofolate dehydrogenase/cyclohydrolase catalytic domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018517396.1
COORDINATES: similar to AA sequence:RefSeq:WP_020052389.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654672.1
NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_013419362.1
COORDINATES: protein motif:HMM:NF012472.2
COORDINATES: similar to AA sequence:RefSeq:WP_018097528.1
COORDINATES: similar to AA sequence:RefSeq:WP_003540893.1
right-handed parallel beta-helix repeat-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016733411.1
COORDINATES: similar to AA sequence:RefSeq:WP_006023613.1
COORDINATES: similar to AA sequence:RefSeq:WP_003501430.1
COORDINATES: similar to AA sequence:RefSeq:WP_018240830.1
COORDINATES: similar to AA sequence:RefSeq:WP_006023610.1
COORDINATES: similar to AA sequence:RefSeq:WP_018240832.1
COORDINATES: similar to AA sequence:RefSeq:WP_006023608.1
multiubiquitin domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013501859.1
COORDINATES: similar to AA sequence:RefSeq:WP_018240835.1
COORDINATES: similar to AA sequence:RefSeq:WP_012114967.1
COORDINATES: similar to AA sequence:RefSeq:WP_003501442.1
COORDINATES: similar to AA sequence:RefSeq:WP_007688260.1
COORDINATES: similar to AA sequence:RefSeq:WP_018240839.1
COORDINATES: protein motif:HMM:NF012493.2
COORDINATES: similar to AA sequence:RefSeq:WP_011427427.1
ParB family; frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014338684.1
COORDINATES: similar to AA sequence:RefSeq:WP_018447859.1
COORDINATES: protein motif:HMM:NF012894.2
COORDINATES: protein motif:HMM:NF012311.2
COORDINATES: similar to AA sequence:RefSeq:WP_003501800.1
COORDINATES: similar to AA sequence:RefSeq:WP_006935312.1
leucine zipper domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018098893.1
COORDINATES: similar to AA sequence:RefSeq:WP_016558572.1
COORDINATES: similar to AA sequence:RefSeq:WP_017277031.1
GO:0030253 - protein secretion by the type I secretion system [Evidence IEA]
HlyD family type I secretion periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_018517062.1
hydrogenase expression/formation protein HypE
COORDINATES: similar to AA sequence:RefSeq:WP_006329038.1
GO:0016530 - metallochaperone activity [Evidence IEA]
GO:0036211 - protein modification process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018517060.1
HypC/HybG/HupF family hydrogenase formation chaperone
COORDINATES: similar to AA sequence:RefSeq:WP_018517059.1
GO:0003998 - acylphosphatase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_026242367.1
GO:0016530 - metallochaperone activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
hydrogenase nickel incorporation protein HypB
COORDINATES: similar to AA sequence:RefSeq:WP_018240265.1
GO:0008901 - ferredoxin hydrogenase activity [Evidence IEA]
hydrogenase maturation nickel metallochaperone HypA
COORDINATES: similar to AA sequence:RefSeq:WP_018517055.1
GO:0016151 - nickel cation binding [Evidence IEA]
nickel-dependent hydrogenase large subunit
COORDINATES: protein motif:HMM:NF023365.2
[NiFe]-hydrogenase assembly chaperone HybE
COORDINATES: similar to AA sequence:RefSeq:WP_006205718.1
COORDINATES: similar to AA sequence:RefSeq:WP_018240257.1
HyaD/HybD family hydrogenase maturation endopeptidase
COORDINATES: similar to AA sequence:RefSeq:WP_018517047.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]
GO:0022904 - respiratory electron transport chain [Evidence IEA]
Ni/Fe-hydrogenase, b-type cytochrome subunit
COORDINATES: similar to AA sequence:RefSeq:WP_006614184.1
COORDINATES: similar to AA sequence:RefSeq:WP_018240254.1
COORDINATES: similar to AA sequence:RefSeq:WP_010490700.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636616.1
COORDINATES: similar to AA sequence:RefSeq:WP_004118282.1
COORDINATES: protein motif:HMM:NF017760.2
COORDINATES: similar to AA sequence:RefSeq:WP_004110790.1
COORDINATES: similar to AA sequence:RefSeq:WP_007539667.1
COORDINATES: similar to AA sequence:RefSeq:WP_004119747.1
COORDINATES: similar to AA sequence:RefSeq:WP_004119752.1
COORDINATES: similar to AA sequence:RefSeq:WP_011993073.1
COORDINATES: similar to AA sequence:RefSeq:WP_011386375.1
GO:0004068 - aspartate 1-decarboxylase activity [Evidence IEA]
GO:0006523 - alanine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018097545.1
COORDINATES: similar to AA sequence:RefSeq:WP_014989420.1
DUF3991 and toprim domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011982941.1
COORDINATES: similar to AA sequence:RefSeq:WP_015341929.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF024491.2
phospholipase D-like domain-containing protein
ParB N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015341932.1
COORDINATES: similar to AA sequence:RefSeq:WP_018325590.1
COORDINATES: similar to AA sequence:RefSeq:WP_011427430.1
COORDINATES: similar to AA sequence:RefSeq:WP_011427431.1
COORDINATES: similar to AA sequence:RefSeq:WP_007539642.1
COORDINATES: similar to AA sequence:RefSeq:WP_011427433.1
zincin-like metallopeptidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007637613.1
COORDINATES: similar to AA sequence:RefSeq:WP_012477327.1
COORDINATES: similar to AA sequence:RefSeq:WP_018328954.1
COORDINATES: similar to AA sequence:RefSeq:WP_018328955.1
COORDINATES: similar to AA sequence:RefSeq:WP_003585958.1
COORDINATES: similar to AA sequence:RefSeq:WP_014000411.1
COORDINATES: similar to AA sequence:RefSeq:WP_003532617.1
GO:0020037 - heme binding [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004673819.1
COORDINATES: similar to AA sequence:RefSeq:WP_011053443.1
COORDINATES: similar to AA sequence:RefSeq:WP_008838317.1
COORDINATES: similar to AA sequence:RefSeq:WP_020628769.1
COORDINATES: similar to AA sequence:RefSeq:WP_026312707.1
COORDINATES: similar to AA sequence:RefSeq:WP_003466963.1
COORDINATES: similar to AA sequence:RefSeq:WP_004119812.1
COORDINATES: similar to AA sequence:RefSeq:WP_008534672.1
GO:0008441 - 3'(2'),5'-bisphosphate nucleotidase activity [Evidence IEA]
3'(2'),5'-bisphosphate nucleotidase CysQ
COORDINATES: similar to AA sequence:RefSeq:WP_014763243.1
COORDINATES: similar to AA sequence:RefSeq:WP_004119814.1
Ti-type conjugative transfer system protein TraG
COORDINATES: similar to AA sequence:RefSeq:WP_018516734.1
type IV conjugative transfer system coupling protein TraD
COORDINATES: similar to AA sequence:RefSeq:WP_015341946.1
COORDINATES: similar to AA sequence:RefSeq:WP_020048127.1
Ti-type conjugative transfer relaxase TraA
COORDINATES: similar to AA sequence:RefSeq:WP_011427444.1
GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0008233 - peptidase activity [Evidence IEA]
conjugative transfer signal peptidase TraF
COORDINATES: similar to AA sequence:RefSeq:WP_020048129.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875413.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011427447.1
COORDINATES: similar to AA sequence:RefSeq:WP_008530437.1
COORDINATES: similar to AA sequence:RefSeq:WP_018482035.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875418.1
COORDINATES: similar to AA sequence:RefSeq:WP_014989445.1
COORDINATES: similar to AA sequence:RefSeq:WP_013984777.1
IncP-type conjugal transfer protein TrbI
COORDINATES: similar to AA sequence:RefSeq:WP_010875421.1
COORDINATES: similar to AA sequence:RefSeq:WP_011427455.1
GO:0009291 - unidirectional conjugation [Evidence IEA]
P-type conjugative transfer protein TrbG
COORDINATES: similar to AA sequence:RefSeq:WP_018482029.1
COORDINATES: similar to AA sequence:RefSeq:WP_004119851.1
P-type conjugative transfer protein TrbL
COORDINATES: similar to AA sequence:RefSeq:WP_015341955.1
P-type conjugative transfer protein TrbJ
COORDINATES: similar to AA sequence:RefSeq:WP_018098144.1
COORDINATES: similar to AA sequence:RefSeq:WP_013984785.1
COORDINATES: similar to AA sequence:RefSeq:WP_014858032.1
COORDINATES: similar to AA sequence:RefSeq:WP_004129936.1
COORDINATES: similar to AA sequence:RefSeq:WP_014989457.1
GO:0016740 - transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007538730.1
COORDINATES: similar to AA sequence:RefSeq:WP_018009669.1
COORDINATES: similar to AA sequence:RefSeq:WP_004672730.1