Xanthomonas albilineans strain Xa-FJ1 plasmid pXaFJ1, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.
Complete Genome Sequence Reveals Evolutionary and Comparative Genomic Features of Xanthomonas albilineans Causing Sugarcane Leaf Scald
Submitted (05-DEC-2019) National Engineering Research Center for Sugarcane, Fujian Agriculture and Forestry University, No.15 Shangxiadian Road, Fuzhou, Fujian 350002, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP046571.1.\nBacteria and source DNA available from Fujian Agriculture and\nForestry University.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. OCT-2019\nAssembly Name :: Xa-FJ1\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 206.0x\nSequencing Technology :: PacBio RSII; Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/11/2023 02:02:18\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,189\nCDSs (total) :: 3,105\nGenes (coding) :: 2,998\nCDSs (with protein) :: 2,998\nGenes (RNA) :: 84\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 51\nncRNAs :: 27\nPseudo Genes (total) :: 107\nCDSs (without protein) :: 107\nPseudo Genes (ambiguous residues) :: 0 of 107\nPseudo Genes (frameshifted) :: 51 of 107\nPseudo Genes (incomplete) :: 83 of 107\nPseudo Genes (internal stop) :: 25 of 107\nPseudo Genes (multiple problems) :: 43 of 107\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_002804303.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF023168.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
information transfer; dna related go:0006259; dna restriction/modification go:0006304 go:0009307
COORDINATES: similar to AA sequence:RefSeq:WP_017171841.1
COORDINATES: similar to AA sequence:RefSeq:WP_012436201.1
extrachromosomal; plasmid related; replication and maintenance go:0006261 go:0006276
COORDINATES: protein motif:HMM:TIGR00621.2
GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]; GO:0006351 - DNA-templated transcription [Evidence IEA]
COORDINATES: protein motif:HMM:NF027824.2
COORDINATES: similar to AA sequence:RefSeq:WP_004861683.1
cell processes go:0009987; cell division go:0000910
COORDINATES: protein motif:HMM:NF014691.2
COORDINATES: similar to AA sequence:RefSeq:WP_017154898.1
COORDINATES: similar to AA sequence:RefSeq:WP_010368869.1
extrachromosomal; plasmid related; plasmid transfer go:0009291
COORDINATES: similar to AA sequence:RefSeq:WP_001001035.1
type IV secretion system DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019692571.1
COORDINATES: protein motif:HMM:NF015205.2
COORDINATES: similar to AA sequence:RefSeq:WP_012478185.1
COORDINATES: similar to AA sequence:RefSeq:WP_006402589.1
COORDINATES: similar to AA sequence:RefSeq:WP_000138004.1
COORDINATES: similar to AA sequence:RefSeq:WP_000101711.1
COORDINATES: similar to AA sequence:RefSeq:WP_000744355.1
TrbG/VirB9 family P-type conjugative transfer protein
COORDINATES: similar to AA sequence:RefSeq:WP_000914645.1
COORDINATES: protein motif:HMM:NF016491.2
COORDINATES: protein motif:HMM:NF033894.1
COORDINATES: similar to AA sequence:RefSeq:WP_000751606.1
COORDINATES: similar to AA sequence:RefSeq:WP_007182936.1
VirB4 family type IV secretion/conjugal transfer ATPase
COORDINATES: protein motif:HMM:NF016957.2
VirB3 family type IV secretion system protein
COORDINATES: protein motif:HMM:NF016820.2
COORDINATES: protein motif:HMM:NF013618.2
lytic transglycosylase domain-containing protein
COORDINATES: protein motif:HMM:NF013014.2
COORDINATES: similar to AA sequence:RefSeq:WP_003490058.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017166857.1
COORDINATES: similar to AA sequence:RefSeq:WP_017158334.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_017158333.1
ParC family partition-associated protein