Acinetobacter tibetensis strain Y-23 plasmid unnamed, complete sequence.
type: Entry
definition: Acinetobacter tibetensis strain Y-23 plasmid unnamed, complete sequence.
sequence version: NZ_CP098733.1
sequence date: 2023-06-26
sequence: sequence
division: CON
label: NZ_CP098733.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN28192584
keyword: RefSeq
source: Acinetobacter tibetensis
organism: Acinetobacter tibetensis
taxonomy: Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales; Moraxellaceae; Acinetobacter.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP098733.1.\nBacteria and source DNA available from soil.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: MAY-2021\nAssembly Method :: Unicycler v. 0.4.8\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 1650.0x\nSequencing Technology :: Illumina NovaSeq; PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 06/26/2023 02:04:39\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,266\nCDSs (total) :: 3,160\nGenes (coding) :: 3,106\nCDSs (with protein) :: 3,106\nGenes (RNA) :: 106\nrRNAs :: 7, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 7, 7 (5S, 16S, 23S)\ntRNAs :: 81\nncRNAs :: 4\nPseudo Genes (total) :: 54\nCDSs (without protein) :: 54\nPseudo Genes (ambiguous residues) :: 0 of 54\nPseudo Genes (frameshifted) :: 29 of 54\nPseudo Genes (incomplete) :: 37 of 54\nPseudo Genes (internal stop) :: 22 of 54\nPseudo Genes (multiple problems) :: 26 of 54\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 8632
topology: circular
so has quality: SO_0000988
location: 1..8632
location: region:1-8632:1
RO_0002162: 2943497

NZ_CP098733
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN28192584
type: BioSample
SIO_000068: biosample

1
title: Isolation, identification and characterization of iprodione-degrading strains in Lhasa, Tibet
author: Pan, H.
journal: Unpublished

2
title: Direct Submission
author: Pan, H.
journal: Submitted (08-JUN-2022) College of Bioscience and Biotechnology, Hunan Agricultural University, No. 1, Nongda Road, Furong District, Changsha, Hunan 410128, China

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8632:1
position: 8632
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-8632:1:source
so part of: sequence
organism: Acinetobacter tibetensis
mol type: genomic DNA
strain: Y-23
isolation source: soil
type material: type strain of Acinetobacter tibetensis
plasmid: unnamed
country: China: Lhasa City, Tibet Autonomous Region
lat lon: 29.364 N 91.153 E
altitude: 3657 m
collection date: 2021-05-30

2943497
type: Taxonomy
SIO_000068: taxonomy

M5E07_RS16275
type: Gene
subclass of: SO_0000704
RO_0002162: 2943497
locus tag: M5E07_RS16275
old locus tag: M5E07_16275
so part of: sequence
location: complement(join(8205..8632,1..1027))
location: region:1-8632:-1
so has part: feature:1-1027:-1:exon
so has part: feature:8205-8632:-1:exon
subclass of: SO_0000010

position:1:-1
position: 1
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8632:-1
position: 8632
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-1027:-1:exon

position:1027:-1
position: 1027
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:8205-8632:-1:exon

position:8205:-1
position: 8205
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

M5E07_RS16275
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2943497
locus tag: M5E07_RS16275
old locus tag: M5E07_16275
inference: COORDINATES: similar to AA sequence:RefSeq:YP_004995702.1
GO component: GO:0016020 - membrane [Evidence IEA]
GO function: GO:0015103 - inorganic anion transmembrane transporter activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: SulP family inorganic anion transporter
translation: MLSNVREQWFSNIRGDVLAGLVVGLALIPEAIAFSIIAGVDPKVGLYASFCIAVVISFVGGRPAMISAATGAMALLMVTLVKEHGLEYLLAATILTGVIQILAGYLKLAKLMRFVSKSVVIGFVNALAILIFMAQLPELTNVTWHVYALVALGLAIIYLFPLIPKLGKLFPSPLVCIIAITLLAIALGIDVRTVGDMGALPDTLPMFLIPNIPLNFETLMIILPYSVALAAVGLLESMMTATIVDEMTDTPSDKHQECKGQGIANIASGFMGGMAGCAMIGQSMINVKSGGLTRLSTFSAGIFLLILVVFISDWLKVIPMAALVAVMIMVSISTFEWSSVTQLKDNPKSSNVVMIATVIVVVATHNLALGVLTGVLLSALFLANKLENDIQVSASFEGTARLYDLRGQIFFSSSEKFMQGFDFKEDVKEVIIDLTHSHIWDVTSVAMLDSVVNKFQKNGANVTVRGLNEASSIMIDKYGTHARI
SIO_010081: M5E07_RS16275
subclass of: SO_0000673
so part of: M5E07_RS16275
location: complement(join(8205..8632,1..1027))
location: region:1-8632:-1
so has part: feature:1-1027:-1:exon
so has part: feature:8205-8632:-1:exon

WP_062032131.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-1027:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:8205-8632:-1:exon

M5E07_RS16280
type: Gene
subclass of: SO_0000704
RO_0002162: 2943497
locus tag: M5E07_RS16280
old locus tag: M5E07_16280
so part of: sequence
location: 1531..1833
location: region:1531-1833:1
so has part: feature:1531-1833:1:exon
subclass of: SO_0000010

position:1531:1
position: 1531
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1833:1
position: 1833
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1531-1833:1:exon

M5E07_RS16280
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2943497
locus tag: M5E07_RS16280
old locus tag: M5E07_16280
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005086328.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: BrnT family toxin
translation: MEIEFSWDEHKADTNLKKHGVAFEDATLVFYDAHAVFKQDRFENGEYRWQAIGLVYGQTVLLVAHTVQDHNGIDHIRIISARQAEKKERKQYEQNRYLQS
SIO_010081: M5E07_RS16280
subclass of: SO_0000673
so part of: M5E07_RS16280
location: 1531..1833
location: region:1531-1833:1
so has part: feature:1531-1833:1:exon

WP_252223971.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1531-1833:1:exon

M5E07_RS16285
type: Gene
subclass of: SO_0000704
RO_0002162: 2943497
locus tag: M5E07_RS16285
old locus tag: M5E07_16285
so part of: sequence
location: 1805..2119
location: region:1805-2119:1
so has part: feature:1805-2119:1:exon
subclass of: SO_0000010

position:1805:1
position: 1805
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2119:1
position: 2119
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1805-2119:1:exon

M5E07_RS16285
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2943497
locus tag: M5E07_RS16285
old locus tag: M5E07_16285
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005198822.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: BrnA antitoxin family protein
translation: MNKTVTYKVDLNKTPVLSEEQKARLEALAKRPDSEIDFSDIPELDESFWKNAVQNPFYKPTKQVTTVRIDADVMQWLKAQGKGYQTRMNKILRDAMLNELKNHP
SIO_010081: M5E07_RS16285
subclass of: SO_0000673
so part of: M5E07_RS16285
location: 1805..2119
location: region:1805-2119:1
so has part: feature:1805-2119:1:exon

WP_252223962.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1805-2119:1:exon

M5E07_RS16290
type: Gene
subclass of: SO_0000704
RO_0002162: 2943497
locus tag: M5E07_RS16290
old locus tag: M5E07_16290
so part of: sequence
location: complement(2253..2993)
location: region:2253-2993:-1
so has part: feature:2253-2993:-1:exon
subclass of: SO_0000010

position:2253:-1
position: 2253
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2993:-1
position: 2993
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2253-2993:-1:exon

M5E07_RS16290
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2943497
locus tag: M5E07_RS16290
old locus tag: M5E07_16290
inference: COORDINATES: protein motif:HMM:NF025053.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: protein phosphatase 2C domain-containing protein
translation: MNPLYFSAKGPRSANEDSYLVQYIEHGGLLLIVADGLGGHKGGKYASKYATKAFYQKFSNLDDISISNLEKITHEIHEELKVLGQEDPELYGMATTLTATYIDSEFNLIGIHTGDSRAYLLRNQGIVQLTVDHTEAQKLFDEGLLTKEELYNYPRKNIIFSALGSRSSELVTDSFEITLEDQDRLLLSSDGFYSAITKKMIRDFSLEYGEFSEFFFEALFFVKNAEPTDNYSIVGVEISTKDSNSP
SIO_010081: M5E07_RS16290
subclass of: SO_0000673
so part of: M5E07_RS16290
location: complement(2253..2993)
location: region:2253-2993:-1
so has part: feature:2253-2993:-1:exon

WP_252223965.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2253-2993:-1:exon

M5E07_RS16295
type: Gene
subclass of: SO_0000704
RO_0002162: 2943497
locus tag: M5E07_RS16295
old locus tag: M5E07_16295
so part of: sequence
location: complement(2993..4324)
location: region:2993-4324:-1
so has part: feature:2993-4324:-1:exon
subclass of: SO_0000010

position:4324:-1
position: 4324
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2993-4324:-1:exon

M5E07_RS16295
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2943497
locus tag: M5E07_RS16295
old locus tag: M5E07_16295
EC number: 2.7.11.1
inference: COORDINATES: protein motif:HMM:NF012298.2
GO function: GO:0005524 - ATP binding [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]
GO process: GO:0006468 - protein phosphorylation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: serine/threonine-protein kinase
translation: MCSYQVIKQLGQGGFAIVSLIQFSDGTFAARKEFHPNQGQVLSQQEIEHIKDRFKREVITLTEIDHPNVVKVLRSEIHLDPPAYIMPVADSTLGDDLAFVKAQPLSIRIKILMDIFAGLEAIHDLSIYHRDLKPQNILKFGNDYAISDFGLISLDKSQVSVLTQTGMYMGSDRYTAPEITSELKFSSRASDIYSVGCILHDLTTTGSGARVPCNQIKDPTNPYEGILQICTRSEKNDRFQSVKDLREAVISIVMNESEQPVVGSNQEKILSILKSQNVYDLTFVNDFINLLETNPLSDSQNILINLDSEILEKLVKINDTNMVSRLCGIYAKWIYSYSFDFAMCDVLASRLDSFWIINDPEVRSNVLLGLLIMGASHNRWYVEQKFVSRIKNCDDNTARRFVLESAVRRREVISAINHLPKSINFNRSELPPLIQQGFAKHGI
SIO_010081: M5E07_RS16295
subclass of: SO_0000673
so part of: M5E07_RS16295
location: complement(2993..4324)
location: region:2993-4324:-1
so has part: feature:2993-4324:-1:exon

WP_252223968.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2993-4324:-1:exon

M5E07_RS16300
type: Gene
subclass of: SO_0000704
RO_0002162: 2943497
locus tag: M5E07_RS16300
old locus tag: M5E07_16300
so part of: sequence
location: complement(4533..4886)
location: region:4533-4886:-1
so has part: feature:4533-4886:-1:exon
subclass of: SO_0000010

position:4533:-1
position: 4533
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4886:-1
position: 4886
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4533-4886:-1:exon

M5E07_RS16300
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2943497
locus tag: M5E07_RS16300
old locus tag: M5E07_16300
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKRKKSVRFSLLLPVIEQLVNEGYTQQSIVEKLQMDHDLDLNLNTFKSYLYRFRSQDKDTQEKPAFDKPKKEISSSFLSSFQDTEKKENESDQKMSPSVSRSRARAKALLDSIPSSK
SIO_010081: M5E07_RS16300
subclass of: SO_0000673
so part of: M5E07_RS16300
location: complement(4533..4886)
location: region:4533-4886:-1
so has part: feature:4533-4886:-1:exon

WP_252223951.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4533-4886:-1:exon

M5E07_RS16305
type: Gene
subclass of: SO_0000704
RO_0002162: 2943497
gene: repM
locus tag: M5E07_RS16305
old locus tag: M5E07_16305
so part of: sequence
location: 6308..7270
location: region:6308-7270:1
so has part: feature:6308-7270:1:exon
subclass of: SO_0000010

position:6308:1
position: 6308
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7270:1
position: 7270
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6308-7270:1:exon

M5E07_RS16305
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2943497
gene: repM
locus tag: M5E07_RS16305
old locus tag: M5E07_16305
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004282117.1
GO function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO process: GO:0006270 - DNA replication initiation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein RepM
translation: MKSDLVVKDNILVNASYNLEVTEQRLILLSIIRARETGQGITSDSKLEIHASDYATRFDVSREAAYSALKNAVHNLFERKFSFKDNHKDTNKEIVVKSRWVSRIAYIDDLAILEVTFAPDVVPLITRLEKHFTSYQLKQVAQLTSKYAIRLYELLISWKEVGKTPVIDLADFREQLGLEINEYQKMINFKNRVLEPAIKQINHLTDITVEYEQFKKGRSISALSFTFKPKKVNTPVTEIKNAHNNFDLFSRMTDSQRHLFANKLSELPDMGKYSQGTESFQQFAVRIAAMLQDPERFKELYPYLKKVGYMPSNQKDTVNG
SIO_010081: M5E07_RS16305
subclass of: SO_0000673
so part of: M5E07_RS16305
location: 6308..7270
location: region:6308-7270:1
so has part: feature:6308-7270:1:exon

WP_252223954.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6308-7270:1:exon

M5E07_RS16310
type: Gene
subclass of: SO_0000704
RO_0002162: 2943497
locus tag: M5E07_RS16310
old locus tag: M5E07_16310
so part of: sequence
location: 7263..7829
location: region:7263-7829:1
so has part: feature:7263-7829:1:exon
subclass of: SO_0000010

position:7263:1
position: 7263
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7829:1
position: 7829
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7263-7829:1:exon

M5E07_RS16310
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2943497
locus tag: M5E07_RS16310
old locus tag: M5E07_16310
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004282116.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid replication DNA-binding protein
translation: MAKLSLSEVSKRFNVSRSTLYRAIKEGRLSRSSDNLFDVSEVIRCFGEPTKKNETNQILNPPKDDADLRQLVDFMKKEIEAYKDREQRYLDQIDRFQLLIGHKENTEGLSHETNLKQPNDALQDNKSDIPISYINKEVEHNGTSHETNIRHPNDAPQHKSITHYETFQKEPKKRGLFGRVLSAVFNED
SIO_010081: M5E07_RS16310
subclass of: SO_0000673
so part of: M5E07_RS16310
location: 7263..7829
location: region:7263-7829:1
so has part: feature:7263-7829:1:exon

WP_252223957.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7263-7829:1:exon

M5E07_RS16315
type: Gene
subclass of: SO_0000704
RO_0002162: 2943497
locus tag: M5E07_RS16315
old locus tag: M5E07_16315
so part of: sequence
location: 7853..7996
location: region:7853-7996:1
so has part: feature:7853-7996:1:exon
subclass of: SO_0000010

position:7853:1
position: 7853
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7996:1
position: 7996
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7853-7996:1:exon

M5E07_RS16315
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2943497
locus tag: M5E07_RS16315
old locus tag: M5E07_16315
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004676226.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKKLKEILQGIAFLLIGIPIMIIASIMDQKAFKKEREQRQKAQEQSK
SIO_010081: M5E07_RS16315
subclass of: SO_0000673
so part of: M5E07_RS16315
location: 7853..7996
location: region:7853-7996:1
so has part: feature:7853-7996:1:exon

WP_252223960.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7853-7996:1:exon