Brachybacterium kimchii strain CBA3104 plasmid pCBA3104-01.
Bacteria; Actinomycetota; Actinomycetes; Micrococcales; Dermabacteraceae; Brachybacterium.
Genomic analysis of Brachybacterium sp. CBA3104
Submitted (09-MAY-2022) Microbiology and Functionality Research Group, World Institute of Kimchi, 86, Kimchi-ro, Nam-gu, Gwangju, Gwangju 61755, South Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP097219.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. 0.4.9; Trycycler v. 0.5.2\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 1585.0x\nSequencing Technology :: Oxford Nanopore MinION; Illumina NextSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/22/2023 19:56:13\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,957\nCDSs (total) :: 3,857\nGenes (coding) :: 3,831\nCDSs (with protein) :: 3,831\nGenes (RNA) :: 100\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 88\nncRNAs :: 3\nPseudo Genes (total) :: 26\nCDSs (without protein) :: 26\nPseudo Genes (ambiguous residues) :: 0 of 26\nPseudo Genes (frameshifted) :: 7 of 26\nPseudo Genes (incomplete) :: 18 of 26\nPseudo Genes (internal stop) :: 4 of 26\nPseudo Genes (multiple problems) :: 2 of 26\n##Genome-Annotation-Data-END##
COORDINATES: protein motif:HMM:NF013630.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
LysM peptidoglycan-binding domain-containing protein
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF019421.2
COORDINATES: protein motif:HMM:NF024949.2
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF024589.2
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008731090.1
COORDINATES: protein motif:HMM:NF013632.2
GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012451.2
GO:0006457 - protein folding [Evidence IEA]
COORDINATES: protein motif:HMM:NF017834.2
COORDINATES: protein motif:HMM:NF023505.2
COORDINATES: protein motif:HMM:NF014786.2
COORDINATES: protein motif:HMM:NF012675.2
GO:0015036 - disulfide oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005052767.1
COORDINATES: protein motif:HMM:NF013122.2
GO:0004527 - exonuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007458626.1
GO:0008233 - peptidase activity [Evidence IEA]
D-alanyl-D-alanine carboxypeptidase family protein
COORDINATES: protein motif:HMM:NF024254.2
COORDINATES: similar to AA sequence:RefSeq:WP_010981610.1
COORDINATES: protein motif:HMM:NF024056.2
COORDINATES: similar to AA sequence:RefSeq:WP_014925919.1
GO:0008168 - methyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF018691.2
COORDINATES: protein motif:HMM:NF020250.2
COORDINATES: protein motif:HMM:NF012652.2
COORDINATES: protein motif:HMM:NF012694.2
type II secretion system F family protein
COORDINATES: protein motif:HMM:NF019428.2
TadE/TadG family type IV pilus assembly protein