Phormidium yuhuli AB48 plasmid unnamed, complete sequence.
Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Oscillatoriaceae; Phormidium; Phormidium yuhuli.
Genome sequence of Phormidium yuhuli AB48 isolated from an industrial photobioreactor environment
Submitted (07-JUN-2022) Microbiology and Immunology, University of British Columbia, 2350 Health Sciences Mall, Vancouver, BC V6T1Z3, Canada
REFSEQ INFORMATION: The reference sequence is identical to\nCP098612.1.\nBacteria and source DNA available from Steven Hallam.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. 0.4.8\nAssembly Name :: UBC_Pyuhuli_1.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 170.0x\nSequencing Technology :: Oxford Nanopore; Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 08/29/2022 17:05:31\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.2\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 4,187\nCDSs (total) :: 4,133\nGenes (coding) :: 4,070\nCDSs (with protein) :: 4,070\nGenes (RNA) :: 54\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 45\nncRNAs :: 3\nPseudo Genes (total) :: 63\nCDSs (without protein) :: 63\nPseudo Genes (ambiguous residues) :: 0 of 63\nPseudo Genes (frameshifted) :: 13 of 63\nPseudo Genes (incomplete) :: 53 of 63\nPseudo Genes (internal stop) :: 3 of 63\nPseudo Genes (multiple problems) :: 6 of 63\nCRISPR Arrays :: 10\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_009786228.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012442.2
COORDINATES: protein motif:HMM:NF017116.2
COORDINATES: similar to AA sequence:RefSeq:WP_015155389.1
COORDINATES: similar to AA sequence:RefSeq:WP_015131836.1
COORDINATES: similar to AA sequence:RefSeq:WP_015176844.1
COORDINATES: similar to AA sequence:RefSeq:WP_006195067.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024986.2
COORDINATES: similar to AA sequence:RefSeq:WP_006668372.1
GO:0004803 - transposase activity [Evidence IEA]
IS1634-like element ISAtsp2 family transposase
COORDINATES: protein motif:HMM:NF023295.2
COORDINATES: similar to AA sequence:RefSeq:WP_009546755.1
COORDINATES: protein motif:HMM:NF013122.2
PEP-CTERM proteins occur, often in large numbers, in the proteomes of bacteria that also encode an exosortase, a predicted intramembrane cysteine proteinase. The presence of a PEP-CTERM domain at a protein's C-terminus predicts cleavage within the sorting domain, followed by covalent anchoring to some some component of the (usually Gram-negative) cell surface. Many PEP-CTERM proteins exhibit an unusual sequence composition that includes large numbers of potential glycosylation sites. Expression of one such protein has been shown restore the ability of a bacterium to form floc, a type of biofilm.; PEP-CTERM proteins occur, often in large numbers, in the proteomes of bacteria that also encode an exosortase, a predicted intramembrane cysteine proteinase. The presence of a PEP-CTERM domain at a protein's C-terminus predicts cleavage within the sorting domain, followed by covalent anchoring to some some component of the (usually Gram-negative) cell surface. Many PEP-CTERM proteins exhibit an unusual sequence composition that includes large numbers of potential glycosylation sites. Expression of one such protein has been shown restore the ability of a bacterium to form floc, a type of biofilm; Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
PEP-CTERM sorting domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017660607.1
GO:0004521 - endoribonuclease activity [Evidence IEA]
GO:0043571 - maintenance of CRISPR repeat elements [Evidence IEA]
COORDINATES: protein motif:HMM:NF012774.2
COORDINATES: similar to AA sequence:RefSeq:WP_009788068.1
Rho termination factor N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF012387.2
GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IEA]
GO:0000413 - protein peptidyl-prolyl isomerization [Evidence IEA]
COORDINATES: protein motif:HMM:NF018601.2
COORDINATES: protein motif:HMM:NF024811.2
COORDINATES: similar to AA sequence:RefSeq:WP_015080855.1