Epinephelus fuscoguttatus mitochondrion, complete genome.
type: Entry
definition: Epinephelus fuscoguttatus mitochondrion, complete genome.
sequence version: NC_020046.1
sequence date: 2023-04-03
sequence: sequence
division: VRT
label: NC_020046.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA927338
keyword: RefSeq
source: mitochondrion Epinephelus fuscoguttatus (brown-marbled grouper)
organism: Epinephelus fuscoguttatus
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Serranoidei; Serranidae; Epinephelinae; Epinephelini; Epinephelus.
reference: 1
references: 23951357
reference: 2
reference: 3
comment: PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to JX119192.\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000819
sequence length: 16648
topology: circular
so has quality: SO_0000988
location: 1..16648
location: region:1-16648:1
RO_0002162: 293821

NC_020046
type: RefSeq
SIO_000068: refseq

PRJNA927338
type: BioProject
SIO_000068: bioproject

1
title: A comprehensive description and evolutionary analysis of 22 grouper (perciformes, epinephelidae) mitochondrial genomes with emphasis on two novel genome organizations
author: Zhuang, X.
author: Qu, M.
author: Zhang, X.
author: Ding, S.
journal: PLoS ONE 8 (8), E73561 (2013)
pubmed: 23951357
comments: Publication Status: Online-Only

23951357
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
journal: Submitted (31-DEC-2012) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

3
title: Direct Submission
author: Meng, Q.
author: Shaoxiong, D.
journal: Submitted (30-MAY-2012) Oceanogrophy, Marine Biology, 182 Daxue Road, Xiamen, Fujian 361005, R.P.China

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16648:1
position: 16648
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-16648:1:source
so part of: sequence
organism: Epinephelus fuscoguttatus
organelle: mitochondrion
mol type: genomic DNA

293821
type: Taxonomy
SIO_000068: taxonomy

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 293821
product: tRNA-Phe
so part of: sequence
location: 1..70
location: region:1-70:1
so has part: feature:1-70:1:region

position:70:1
position: 70
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-70:1:region

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 293821
product: 12S ribosomal RNA
note: s-rRNA
so part of: sequence
location: 71..1022
location: region:71-1022:1
so has part: feature:71-1022:1:region

position:71:1
position: 71
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1022:1
position: 1022
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:71-1022:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 293821
product: tRNA-Val
so part of: sequence
location: 1023..1092
location: region:1023-1092:1
so has part: feature:1023-1092:1:region

position:1023:1
position: 1023
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1092:1
position: 1092
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1023-1092:1:region

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 293821
product: 16S ribosomal RNA
note: l-rRNA
so part of: sequence
location: 1094..2798
location: region:1094-2798:1
so has part: feature:1094-2798:1:region

position:1094:1
position: 1094
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2798:1
position: 2798
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1094-2798:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 293821
product: tRNA-Leu
so part of: sequence
location: 2799..2874
location: region:2799-2874:1
so has part: feature:2799-2874:1:region

position:2799:1
position: 2799
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2874:1
position: 2874
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2799-2874:1:region

ND1
type: Gene
subclass of: SO_0000704
RO_0002162: 293821
gene: ND1
so part of: sequence
location: 2875..3849
location: region:2875-3849:1
so has part: feature:2875-3849:1:exon
subclass of: SO_0000010

14412340
type: Gene
SIO_000068: ncbigene

position:2875:1
position: 2875
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3849:1
position: 3849
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2875-3849:1:exon

ND1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 293821
gene: ND1
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 1
translation: MISTLFTHIINPLAYIIPVLLAVAFLTLVERKVLGYMQFRKGPNIVGPYGLLQPIADGVKLFTKEPVRPSTASPILFLLAPILALTLALTLWAPLPMPYPILDLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLNAIIFTGGFTLQTFNTAQETVWLLLPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSATLFLGASHVPITPELTTVNLMTKAALLSLLFLWVRASYPRFRYDQLMHLIWKNFLPLTLALVIWHLALPIALAGLPPQI
SIO_010081: ND1
subclass of: SO_0000673
so part of: ND1
location: 2875..3849
location: region:2875-3849:1
so has part: feature:2875-3849:1:exon

YP_007317667.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2875-3849:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 293821
product: tRNA-Ile
so part of: sequence
location: 3854..3923
location: region:3854-3923:1
so has part: feature:3854-3923:1:region

position:3854:1
position: 3854
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3923:1
position: 3923
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3854-3923:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 293821
product: tRNA-Gln
so part of: sequence
location: complement(3923..3993)
location: region:3923-3993:-1
so has part: feature:3923-3993:-1:region

position:3923:-1
position: 3923
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3993:-1
position: 3993
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3923-3993:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 293821
product: tRNA-Met
so part of: sequence
location: 3994..4062
location: region:3994-4062:1
so has part: feature:3994-4062:1:region

position:3994:1
position: 3994
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4062:1
position: 4062
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3994-4062:1:region

ND2
type: Gene
subclass of: SO_0000704
RO_0002162: 293821
gene: ND2
so part of: sequence
location: 4063..5107
location: region:4063-5107:1
so has part: feature:4063-5107:1:exon
subclass of: SO_0000010

14412328
type: Gene
SIO_000068: ncbigene

position:4063:1
position: 4063
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5107:1
position: 5107
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4063-5107:1:exon

ND2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 293821
gene: ND2
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:5107,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 2
translation: MNPYILAILLFSLGLGTTITLTSSHWLFAWMGLEINTLAILPLMAQQHHPRAVEATMKYFLTQATGAATLLFASTTNAWLTGQWDILQMSHPLATTMAILALSLKIGLAPLHTWLPEVLQGLDLTTGLILSTWQKLAPFALLLQIQPTNPSILVMLGVTSTLVGGWGGLNQTQLRKILAYSSTAHLGWMILILQYSPSLALLTLITYLIMTSSTFLVFKLNKSTNINMLATSWAKAPALTTLTPLVLLSLGGLPPLTGFMPKWLILQELTKQELAPIATLTALTALLSLYFYLRLTYAMTLTMSPNNVTGTTPWRLPSLQLTLPLAILTTATISLLPLTPTISALLIP
SIO_010081: ND2
subclass of: SO_0000673
so part of: ND2
location: 4063..5107
location: region:4063-5107:1
so has part: feature:4063-5107:1:exon

YP_007317668.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4063-5107:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 293821
product: tRNA-Trp
so part of: sequence
location: 5108..5178
location: region:5108-5178:1
so has part: feature:5108-5178:1:region

position:5108:1
position: 5108
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5178:1
position: 5178
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5108-5178:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 293821
product: tRNA-Ala
so part of: sequence
location: complement(5180..5248)
location: region:5180-5248:-1
so has part: feature:5180-5248:-1:region

position:5180:-1
position: 5180
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5248:-1
position: 5248
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5180-5248:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 293821
product: tRNA-Asn
so part of: sequence
location: complement(5249..5321)
location: region:5249-5321:-1
so has part: feature:5249-5321:-1:region

position:5249:-1
position: 5249
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5321:-1
position: 5321
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5249-5321:-1:region

rep_origin
type: Replication Origin
subclass of: SO_0000296
RO_0002162: 293821
note: replication origin of L-strand
so part of: sequence
location: 5322..5360
location: region:5322-5360:1
so has part: feature:5322-5360:1:region

position:5322:1
position: 5322
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5360:1
position: 5360
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5322-5360:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 293821
product: tRNA-Cys
so part of: sequence
location: complement(5361..5427)
location: region:5361-5427:-1
so has part: feature:5361-5427:-1:region

position:5361:-1
position: 5361
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5427:-1
position: 5427
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5361-5427:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 293821
product: tRNA-Tyr
so part of: sequence
location: complement(5428..5498)
location: region:5428-5498:-1
so has part: feature:5428-5498:-1:region

position:5428:-1
position: 5428
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5498:-1
position: 5498
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5428-5498:-1:region

COX1
type: Gene
subclass of: SO_0000704
RO_0002162: 293821
gene: COX1
so part of: sequence
location: 5500..7050
location: region:5500-7050:1
so has part: feature:5500-7050:1:exon
subclass of: SO_0000010

14412329
type: Gene
SIO_000068: ncbigene

position:5500:1
position: 5500
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7050:1
position: 7050
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5500-7050:1:exon

COX1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 293821
gene: COX1
codon start: 1
transl table: 2
product: cytochrome c oxidase subunit I
translation: MAITRWFFSTNHKDIGTLYLVFGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLIPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGISSILGAINFITTIINMKPPAISQYQTPLFVWAVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVAYYSGKKEPFGYMGMVWAMMAIGLLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGSIKWETPLLWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIVAAFVHWFPLFTGYTLHSTWTKIHFGIMFVGVNLTFFPQHFLGLAGMPRRYSDYPDAYTLWNTVSSVGSMISLVAVIMFLFIIWEAFASKREVLAVELTMTNVEWLHGCPPPYHTFEEPAFVQIRSY
SIO_010081: COX1
subclass of: SO_0000673
so part of: COX1
location: 5500..7050
location: region:5500-7050:1
so has part: feature:5500-7050:1:exon

YP_007317669.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5500-7050:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 293821
product: tRNA-Ser
so part of: sequence
location: complement(7052..7122)
location: region:7052-7122:-1
so has part: feature:7052-7122:-1:region

position:7052:-1
position: 7052
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7122:-1
position: 7122
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7052-7122:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 293821
product: tRNA-Asp
so part of: sequence
location: 7126..7198
location: region:7126-7198:1
so has part: feature:7126-7198:1:region

position:7126:1
position: 7126
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7198:1
position: 7198
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7126-7198:1:region

COX2
type: Gene
subclass of: SO_0000704
RO_0002162: 293821
gene: COX2
so part of: sequence
location: 7207..7897
location: region:7207-7897:1
so has part: feature:7207-7897:1:exon
subclass of: SO_0000010

14412330
type: Gene
SIO_000068: ncbigene

position:7207:1
position: 7207
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7897:1
position: 7897
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7207-7897:1:exon

COX2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 293821
gene: COX2
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:7897,aa:TERM)
transl table: 2
product: cytochrome c oxidase subunit II
translation: MAHPTQLGLQDAASPVMEELLHFHDHALMIVFLISTLVLYIIVAMVSTKLTNKYILDSQEIEIIWTILPAVILILIALPSLRILYLMDEINDPHITIKAMGHQWYWSYEYTDYEDLGFDSYMIPTQDLTPGQFRLLEADHRMVVPLDSPVRVLVSAEDVLHSWAVPALGVKMDAVPGRLNQTAFVTSRPGVFYGQCSEICGANHSFMPIVVEVVPLEHFENWSSFMLQDA
SIO_010081: COX2
subclass of: SO_0000673
so part of: COX2
location: 7207..7897
location: region:7207-7897:1
so has part: feature:7207-7897:1:exon

YP_007317670.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7207-7897:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 293821
product: tRNA-Lys
so part of: sequence
location: 7898..7971
location: region:7898-7971:1
so has part: feature:7898-7971:1:region

position:7898:1
position: 7898
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7971:1
position: 7971
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7898-7971:1:region

ATP8
type: Gene
subclass of: SO_0000704
RO_0002162: 293821
gene: ATP8
so part of: sequence
location: 7973..8140
location: region:7973-8140:1
so has part: feature:7973-8140:1:exon
subclass of: SO_0000010

14412331
type: Gene
SIO_000068: ncbigene

position:7973:1
position: 7973
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8140:1
position: 8140
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7973-8140:1:exon

ATP8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 293821
gene: ATP8
codon start: 1
transl table: 2
product: ATP synthase F0 subunit 8
translation: MPQLLPLPWFGTLLFAWMIFLTFFPKKVMAHTFPYEPASIKPQKLVKTSWNWPWA
SIO_010081: ATP8
subclass of: SO_0000673
so part of: ATP8
location: 7973..8140
location: region:7973-8140:1
so has part: feature:7973-8140:1:exon

YP_007317671.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7973-8140:1:exon

ATP6
type: Gene
subclass of: SO_0000704
RO_0002162: 293821
gene: ATP6
so part of: sequence
location: <8131..8814
location: region:8131-8814:1
so has part: feature:8131-8814:1:exon
subclass of: SO_0000010

14412332
type: Gene
SIO_000068: ncbigene

position:8131:1
position: 8131
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:8814:1
position: 8814
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8131-8814:1:exon

ATP6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 293821
gene: ATP6
note: start codon not determined
codon start: 1
transl table: 2
product: ATP synthase F0 subunit 6
translation: LSVSFFDQFMSTTCLGIPLIALALTFPSILYPTATTRWLNNRLLTLQSAFINRFTHQLLLPLNAGGHKWATLLASLMLFLISLNMLGLLPYTFTPTAQLSLNLGFAVPLWLATVIIGMRNQPNHALGHLLPEGTPNLLIPMLIIIETISLFIRPLALGVRLTANLTAGHLLIQLISTAAFVLLPLMPTVAILTATVLVLLTLLEVAVAMIQAYVFVLLLTLYLQENI
SIO_010081: ATP6
subclass of: SO_0000673
so part of: ATP6
location: <8131..8814
location: region:8131-8814:1
so has part: feature:8131-8814:1:exon

YP_007317672.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8131-8814:1:exon

COX3
type: Gene
subclass of: SO_0000704
RO_0002162: 293821
gene: COX3
so part of: sequence
location: 8814..9598
location: region:8814-9598:1
so has part: feature:8814-9598:1:exon
subclass of: SO_0000010

14412333
type: Gene
SIO_000068: ncbigene

position:9598:1
position: 9598
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8814-9598:1:exon

COX3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 293821
gene: COX3
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:9597..9598,aa:TERM)
transl table: 2
product: cytochrome c oxidase subunit III
translation: MAHQAHAYHMVDPSPWPLTGAIAALLMTSGLAIWFHFHSTTLIVLGTILLLLTMYQWWRDIIREGTFQGHHTPPVQKGLRYGMILFITSEVFFFLGFFWAFYHSSLAPTPELGGCWPPTGISTLDPFEVPLLNTAVLLASGVTVTWAHHSIMERERKQTIQSLTLTILLGFYFTFLQAMEYYEAPFTIADGVYGSTFFVATGFHGLHVIIGSTFLAVCLLRQIQYHFTSEHHFGFEAAAWYWHFVDVVWLFLYISIYWWGS
SIO_010081: COX3
subclass of: SO_0000673
so part of: COX3
location: 8814..9598
location: region:8814-9598:1
so has part: feature:8814-9598:1:exon

YP_007317673.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8814-9598:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 293821
product: tRNA-Gly
so part of: sequence
location: 9599..9670
location: region:9599-9670:1
so has part: feature:9599-9670:1:region

position:9599:1
position: 9599
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9670:1
position: 9670
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9599-9670:1:region

ND3
type: Gene
subclass of: SO_0000704
RO_0002162: 293821
gene: ND3
so part of: sequence
location: 9671..10019
location: region:9671-10019:1
so has part: feature:9671-10019:1:exon
subclass of: SO_0000010

14412334
type: Gene
SIO_000068: ncbigene

position:9671:1
position: 9671
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10019:1
position: 10019
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9671-10019:1:exon

ND3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 293821
gene: ND3
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:10019,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 3
translation: MNLVSTVITIALTLSIALAILSFWLPLMNPDHEKLSPYECGFDPLGTARLPFSLRFFLVAILFLLFDLEIALLLPLPWGDQLTSPTLTFLWASIVLALLTLGLIYEWLQGGLDWAE
SIO_010081: ND3
subclass of: SO_0000673
so part of: ND3
location: 9671..10019
location: region:9671-10019:1
so has part: feature:9671-10019:1:exon

YP_007317674.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9671-10019:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 293821
product: tRNA-Arg
so part of: sequence
location: 10020..10088
location: region:10020-10088:1
so has part: feature:10020-10088:1:region

position:10020:1
position: 10020
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10088:1
position: 10088
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10020-10088:1:region

ND4L
type: Gene
subclass of: SO_0000704
RO_0002162: 293821
gene: ND4L
so part of: sequence
location: 10089..10385
location: region:10089-10385:1
so has part: feature:10089-10385:1:exon
subclass of: SO_0000010

14412335
type: Gene
SIO_000068: ncbigene

position:10089:1
position: 10089
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10385:1
position: 10385
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10089-10385:1:exon

ND4L
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 293821
gene: ND4L
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 4L
translation: MTPVHFAFSSAFILGLTGLAFHRTHLLSALLCLEGMMLSLFIALSLWTVHLNSTSLCAAPMLLLAFSACEASAGLALLVATARTHGTDHLQNLNLLQC
SIO_010081: ND4L
subclass of: SO_0000673
so part of: ND4L
location: 10089..10385
location: region:10089-10385:1
so has part: feature:10089-10385:1:exon

YP_007317675.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10089-10385:1:exon

ND4
type: Gene
subclass of: SO_0000704
RO_0002162: 293821
gene: ND4
so part of: sequence
location: 10379..11759
location: region:10379-11759:1
so has part: feature:10379-11759:1:exon
subclass of: SO_0000010

14412336
type: Gene
SIO_000068: ncbigene

position:10379:1
position: 10379
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11759:1
position: 11759
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10379-11759:1:exon

ND4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 293821
gene: ND4
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:11759,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 4
translation: MLKVLIPTLMLIPTAWLTPAKWLWPTTLTHSMLIALISLSWLKHAMETGWSTLNLFMATDPLSTPLLVLTCWLLPLMILASQNHTATEPINRQRMYISLLTSLQIFLILAFGATEVIMFYIMFEATLIPTLILITRWGNQTERLNAGIYFLFYTLAGSLPLLVALLLLQNYTGTLSLFTLPFSCPLHLSSYTDKLWWAGCLLAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLAAVLLKLGGYGMMRMIVMLDPLTKDLSYPFLIFALWGVIMTGSICLRQTDLKSLIAYSSVSHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGLQIVLPLMTAWWFIASLANLALPPLPNLMGELMIITSLFNWSWWTIVLTGAGTLITASYSLYMFLMTQRGPLPSHIIGLDPSHSREHLLMTLHLLPLLLLILKPELIWGWAG
SIO_010081: ND4
subclass of: SO_0000673
so part of: ND4
location: 10379..11759
location: region:10379-11759:1
so has part: feature:10379-11759:1:exon

YP_007317676.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10379-11759:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 293821
product: tRNA-His
so part of: sequence
location: 11760..11829
location: region:11760-11829:1
so has part: feature:11760-11829:1:region

position:11760:1
position: 11760
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11829:1
position: 11829
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11760-11829:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 293821
product: tRNA-Ser
so part of: sequence
location: 11830..11901
location: region:11830-11901:1
so has part: feature:11830-11901:1:region

position:11830:1
position: 11830
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11901:1
position: 11901
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11830-11901:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 293821
product: tRNA-Leu
so part of: sequence
location: 11909..11981
location: region:11909-11981:1
so has part: feature:11909-11981:1:region

position:11909:1
position: 11909
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11981:1
position: 11981
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11909-11981:1:region

ND5
type: Gene
subclass of: SO_0000704
RO_0002162: 293821
gene: ND5
so part of: sequence
location: 11982..13820
location: region:11982-13820:1
so has part: feature:11982-13820:1:exon
subclass of: SO_0000010

14412337
type: Gene
SIO_000068: ncbigene

position:11982:1
position: 11982
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13820:1
position: 13820
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11982-13820:1:exon

ND5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 293821
gene: ND5
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 5
translation: MHTPSITMTSSLIIIFSLLIFPVLTTLNPLPQKESWALTHVKTAVKLAFFVSLLPLFLFLSQGAETVITSWNWMSTSTFDINISLKFDHYSIMFTPVALYVTWSILEFASWYMHADPNMNRFFKYLLIFLIAMIILVTANNLFQLFIGWEGVGIMSFLLIGWWHGRADANTAALQAVIYNRVGDIGLILAMAWMVSHLNSWELQQIFAVAKDFDLTYPLLGLIVAATGKSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLVRMSPLLENNPTALTTCLCLGALTTLFTATCALTQNDIKKIVAFSTSSQLGLMMVTIGLNQPQLAFLHICTHAFFKAMLFLCSGSIIHSLNDEQDIRKMGGMHRLTPFTSSCLTIGSLALTGTPFLAGFFSKDAIIEALNTSYLNAWALTLTLLATSFTAIYSLRIVFFVSMGRPRFNALSPINENNPAVINPIKRLAWGSIVAGLLITSNLLPLKTPVMSMPLMLKLTALTVTILGLLIALELASLTSKQFKPAPYLPTFRFSNMLGFFPMVMHRFPPAMSLGMGQSIASQMVDQTWLEKSGPKAAAKLNTPLITSTSNTQRGLVKTYLIFFLITLMFTMLIFFI
SIO_010081: ND5
subclass of: SO_0000673
so part of: ND5
location: 11982..13820
location: region:11982-13820:1
so has part: feature:11982-13820:1:exon

YP_007317677.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11982-13820:1:exon

ND6
type: Gene
subclass of: SO_0000704
RO_0002162: 293821
gene: ND6
so part of: sequence
location: complement(13817..14338)
location: region:13817-14338:-1
so has part: feature:13817-14338:-1:exon
subclass of: SO_0000010

14412338
type: Gene
SIO_000068: ncbigene

position:13817:-1
position: 13817
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14338:-1
position: 14338
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13817-14338:-1:exon

ND6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 293821
gene: ND6
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 6
translation: MCFTVICFLICWIVGAIAVASNPSPFFGALGLVMVAGVGCGVLVEYGSPFLALILFLIYLGGMLVVFAYSAALAAEPYPESWLNPAVVVYMCCYTVVVMAGVSVFWHEWVGALSGSADEWGPFNIFRADNGGVAVMYSEGGWMLVVGAGVLLLTLFVVLELTRGLGRGTLRAV
SIO_010081: ND6
subclass of: SO_0000673
so part of: ND6
location: complement(13817..14338)
location: region:13817-14338:-1
so has part: feature:13817-14338:-1:exon

YP_007317678.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13817-14338:-1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 293821
product: tRNA-Glu
so part of: sequence
location: complement(14339..14408)
location: region:14339-14408:-1
so has part: feature:14339-14408:-1:region

position:14339:-1
position: 14339
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14408:-1
position: 14408
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14339-14408:-1:region

CYTB
type: Gene
subclass of: SO_0000704
RO_0002162: 293821
gene: CYTB
so part of: sequence
location: 14416..15556
location: region:14416-15556:1
so has part: feature:14416-15556:1:exon
subclass of: SO_0000010

14412339
type: Gene
SIO_000068: ncbigene

position:14416:1
position: 14416
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15556:1
position: 15556
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14416-15556:1:exon

CYTB
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 293821
gene: CYTB
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:15556,aa:TERM)
transl table: 2
product: cytochrome b
translation: MASLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLAAQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHANGASFFFICIYAHIGRGLYYGSYLYKETWNIGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYIGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFIIAAATVLHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAALLITLTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILILMLVPLLHTSKQRALTFRPLSQFLFWTLIADVMILTWIGGMPVEHPFIIIGQIASALYFSLFLFLMPVAGWAENKILEWR
SIO_010081: CYTB
subclass of: SO_0000673
so part of: CYTB
location: 14416..15556
location: region:14416-15556:1
so has part: feature:14416-15556:1:exon

YP_007317679.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14416-15556:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 293821
product: tRNA-Thr
so part of: sequence
location: 15557..15630
location: region:15557-15630:1
so has part: feature:15557-15630:1:region

position:15557:1
position: 15557
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15630:1
position: 15630
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15557-15630:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 293821
product: tRNA-Pro
so part of: sequence
location: 15631..15700
location: region:15631-15700:1
so has part: feature:15631-15700:1:region

position:15631:1
position: 15631
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15700:1
position: 15700
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15631-15700:1:region

D-loop
type: Displacement Loop
subclass of: SO_0000297
RO_0002162: 293821
so part of: sequence
location: 15701..16648
location: region:15701-16648:1
so has part: feature:15701-16648:1:region

position:15701:1
position: 15701
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15701-16648:1:region