Halocatena salina strain AD-1 plasmid unnamed4, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Halobacteriales; Haloarculaceae; Halocatena.
Halocatena sp. nov., isolated from a salt lake
Submitted (18-APR-2022) School of Food and Biological Engineering, Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP096023.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 4\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 477.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 07/30/2023 12:09:13\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,895\nCDSs (total) :: 3,844\nGenes (coding) :: 3,747\nCDSs (with protein) :: 3,747\nGenes (RNA) :: 51\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 46\nncRNAs :: 2\nPseudo Genes (total) :: 97\nCDSs (without protein) :: 97\nPseudo Genes (ambiguous residues) :: 0 of 97\nPseudo Genes (frameshifted) :: 49 of 97\nPseudo Genes (incomplete) :: 70 of 97\nPseudo Genes (internal stop) :: 27 of 97\nPseudo Genes (multiple problems) :: 39 of 97\nCRISPR Arrays :: 10\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_007542231.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008321942.1
COORDINATES: similar to AA sequence:RefSeq:WP_020222877.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008415412.1
COORDINATES: similar to AA sequence:RefSeq:WP_006055629.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006884331.1
COORDINATES: similar to AA sequence:RefSeq:WP_004590872.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007982236.1
GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006112551.1
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF017691.2
excalibur calcium-binding domain-containing protein
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_006432786.1
COORDINATES: similar to AA sequence:RefSeq:WP_008002782.1
COORDINATES: similar to AA sequence:RefSeq:WP_015409529.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF016362.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007273771.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0140658 - ATP-dependent chromatin remodeler activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006183330.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053133.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006600570.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004825 - methionine-tRNA ligase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO:0006431 - methionyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008577269.1
COORDINATES: similar to AA sequence:RefSeq:WP_006054146.1
GO:0016799 - hydrolase activity, hydrolyzing N-glycosyl compounds [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
ADP-ribosylglycohydrolase family protein
COORDINATES: protein motif:HMM:NF021622.2
COORDINATES: protein motif:HMM:NF012234.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008458668.1
COORDINATES: similar to AA sequence:RefSeq:WP_010546872.1
COORDINATES: similar to AA sequence:RefSeq:WP_014865885.1
COORDINATES: similar to AA sequence:RefSeq:WP_008446367.1
COORDINATES: similar to AA sequence:RefSeq:WP_014030942.1
COORDINATES: similar to AA sequence:RefSeq:WP_005538810.1
COORDINATES: similar to AA sequence:RefSeq:WP_004047674.1
BREX-5 system adenine-specific DNA-methyltransferase PglX
COORDINATES: similar to AA sequence:RefSeq:WP_008446378.1
COORDINATES: similar to AA sequence:RefSeq:WP_013878518.1
COORDINATES: similar to AA sequence:RefSeq:WP_008308304.1
COORDINATES: protein motif:HMM:NF024606.2
TerB N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014053169.1
COORDINATES: similar to AA sequence:RefSeq:WP_012507022.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF040371.1
COORDINATES: similar to AA sequence:RefSeq:WP_008421996.1
COORDINATES: protein motif:HMM:NF037660.2
GO:0005515 - protein binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009154800.1
COORDINATES: protein motif:HMM:NF037531.2
COORDINATES: protein motif:HMM:NF013752.2
COORDINATES: similar to AA sequence:RefSeq:WP_007737152.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - DNA transposition [Evidence IEA]
COORDINATES: protein motif:HMM:NF013088.2
COORDINATES: similar to AA sequence:RefSeq:WP_007690123.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015322892.1
COORDINATES: similar to AA sequence:RefSeq:WP_015790187.1
COORDINATES: similar to AA sequence:RefSeq:WP_014863656.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012943563.1
COORDINATES: similar to AA sequence:RefSeq:WP_020673308.1
GO:0004177 - aminopeptidase activity [Evidence IEA]
GO:0030163 - protein catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012464.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007274384.1
COORDINATES: protein motif:HMM:NF033497.1
rubrerythrin-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005554588.1
GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008418313.1
COORDINATES: protein motif:HMM:NF025054.2
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004268146.1
GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]; GO:0001072 - transcription antitermination factor activity, RNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007975844.1
COORDINATES: protein motif:HMM:NF021897.2
type IV secretion system DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005581135.1
COORDINATES: similar to AA sequence:RefSeq:WP_007274334.1
GO:0004521 - RNA endonuclease activity [Evidence IEA]
GO:0043571 - maintenance of CRISPR repeat elements [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007274333.1
GO:0004520 - DNA endonuclease activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007736982.1
GO:0004518 - nuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007736983.1
GO:0004386 - helicase activity [Evidence IEA]
type I-D CRISPR-associated helicase Cas3'
COORDINATES: similar to AA sequence:RefSeq:WP_007736984.1
COORDINATES: similar to AA sequence:RefSeq:WP_007736985.1
GO:0003674 - molecular_function [Evidence IEA]
type I-D CRISPR-associated protein Cas7/Csc2
COORDINATES: similar to AA sequence:RefSeq:WP_014050467.1
COORDINATES: similar to AA sequence:RefSeq:WP_006600198.1
CRISPR system precrRNA processing endoribonuclease RAMP protein Cas6
COORDINATES: similar to AA sequence:RefSeq:WP_014050469.1
COORDINATES: similar to AA sequence:RefSeq:WP_008422487.1
COORDINATES: protein motif:HMM:TIGR00237.1
GO:0009318 - exodeoxyribonuclease VII complex [Evidence IEA]
GO:0008855 - exodeoxyribonuclease VII activity [Evidence IEA]
GO:0006308 - DNA catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004594344.1
COORDINATES: protein motif:HMM:TIGR02928.1
COORDINATES: protein motif:HMM:TIGR01596.1
COORDINATES: similar to AA sequence:RefSeq:WP_013035118.1
type I-B CRISPR-associated protein Cas5b
COORDINATES: similar to AA sequence:RefSeq:WP_005576675.1
type I-B CRISPR-associated protein Cas7/Csh2
COORDINATES: protein motif:HMM:NF021033.2
COORDINATES: similar to AA sequence:RefSeq:WP_015789205.1
COORDINATES: similar to AA sequence:RefSeq:WP_012660063.1
COORDINATES: similar to AA sequence:RefSeq:WP_008324573.1
GO:0004520 - DNA endonuclease activity [Evidence IEA]
type I-B CRISPR-associated endonuclease Cas1b
COORDINATES: similar to AA sequence:RefSeq:WP_004043133.1
COORDINATES: similar to AA sequence:RefSeq:WP_008528502.1
COORDINATES: similar to AA sequence:RefSeq:WP_010904188.1
COORDINATES: protein motif:HMM:NF012955.2
bacterio-opsin activator domain-containing protein
COORDINATES: protein motif:HMM:NF016831.2
COORDINATES: similar to AA sequence:RefSeq:WP_012942302.1
COORDINATES: protein motif:HMM:NF027245.2
COORDINATES: protein motif:HMM:NF024816.2
COORDINATES: similar to AA sequence:RefSeq:WP_007276461.1
orc1/cdc6 family replication initiation protein
COORDINATES: similar to AA sequence:RefSeq:WP_008446344.1
COORDINATES: similar to AA sequence:RefSeq:WP_008452467.1
COORDINATES: similar to AA sequence:RefSeq:WP_006184814.1
COORDINATES: similar to AA sequence:RefSeq:WP_006184813.1
COORDINATES: similar to AA sequence:RefSeq:WP_008524579.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053352.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
ArdC-like ssDNA-binding domain-containing protein