Halocatena salina strain AD-1 plasmid unnamed2, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Halobacteriales; Haloarculaceae; Halocatena.
Halocatena sp. nov., isolated from a salt lake
Submitted (18-APR-2022) School of Food and Biological Engineering, Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP096021.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 4\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 477.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 07/30/2023 12:09:13\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,895\nCDSs (total) :: 3,844\nGenes (coding) :: 3,747\nCDSs (with protein) :: 3,747\nGenes (RNA) :: 51\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 46\nncRNAs :: 2\nPseudo Genes (total) :: 97\nCDSs (without protein) :: 97\nPseudo Genes (ambiguous residues) :: 0 of 97\nPseudo Genes (frameshifted) :: 49 of 97\nPseudo Genes (incomplete) :: 70 of 97\nPseudo Genes (internal stop) :: 27 of 97\nPseudo Genes (multiple problems) :: 39 of 97\nCRISPR Arrays :: 10\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_011222237.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_014051271.1
pyridoxamine 5'-phosphate oxidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004593167.1
COORDINATES: protein motif:HMM:NF036688.2
COORDINATES: protein motif:HMM:NF024063.2
COORDINATES: protein motif:HMM:NF015983.2
GO:0003824 - catalytic activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF037660.2
COORDINATES: similar to AA sequence:RefSeq:WP_006185974.1
orc1/cdc6 family replication initiation protein
COORDINATES: similar to AA sequence:RefSeq:WP_007261559.1
COORDINATES: protein motif:HMM:NF012371.2
GO:0016787 - hydrolase activity [Evidence IEA]
serine hydrolase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013879549.1
internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
Lrp/AsnC family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_009366911.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004356 - glutamate-ammonia ligase activity [Evidence IEA]
GO:0006542 - glutamine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004959752.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0047889 - ferredoxin-nitrate reductase activity [Evidence IEA]
GO:0042128 - nitrate assimilation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014041650.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004517659.1
COORDINATES: similar to AA sequence:RefSeq:WP_004968491.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_005164667.1
carboxymuconolactone decarboxylase family protein
COORDINATES: protein motif:HMM:NF016831.2
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF013594.2
GO:0004222 - metalloendopeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007108527.1
COORDINATES: similar to AA sequence:RefSeq:WP_006075919.1
COORDINATES: similar to AA sequence:RefSeq:WP_005535033.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024091.2
COORDINATES: similar to AA sequence:RefSeq:WP_010612662.1
COORDINATES: protein motif:HMM:TIGR01409.1
twin-arginine translocation signal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006106748.1
COORDINATES: similar to AA sequence:RefSeq:WP_006106747.1
COORDINATES: similar to AA sequence:RefSeq:WP_014555610.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019916925.1
COORDINATES: similar to AA sequence:RefSeq:WP_009579410.1
GO:0008168 - methyltransferase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF012770.2
COORDINATES: similar to AA sequence:RefSeq:WP_004594486.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF033788.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_015788968.1
COORDINATES: similar to AA sequence:RefSeq:WP_004058697.1
GO:0006813 - potassium ion transport [Evidence IEA]
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007273877.1
COORDINATES: similar to AA sequence:RefSeq:WP_004058692.1
COORDINATES: similar to AA sequence:RefSeq:WP_007703482.1
COORDINATES: similar to AA sequence:RefSeq:WP_004058688.1
COORDINATES: similar to AA sequence:RefSeq:WP_006053466.1
COORDINATES: similar to AA sequence:RefSeq:WP_008161067.1
COORDINATES: similar to AA sequence:RefSeq:WP_007540549.1
COORDINATES: protein motif:HMM:NF012398.2
COORDINATES: protein motif:HMM:NF019604.2
COORDINATES: protein motif:HMM:NF014860.2
COORDINATES: similar to AA sequence:RefSeq:WP_007694246.1
COORDINATES: protein motif:HMM:NF021009.2
GO:0030246 - carbohydrate binding [Evidence IEA]
GO:0007155 - cell adhesion [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012945559.1
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF024753.2
PQQ-binding-like beta-propeller repeat protein
COORDINATES: similar to AA sequence:RefSeq:WP_009365629.1
GO:0004371 - glycerone kinase activity [Evidence IEA]
GO:0006071 - glycerol metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004041423.1
COORDINATES: similar to AA sequence:RefSeq:WP_008849796.1
COORDINATES: similar to AA sequence:RefSeq:WP_015910191.1
GO:0008965 - phosphoenolpyruvate-protein phosphotransferase activity [Evidence IEA]
GO:0009401 - phosphoenolpyruvate-dependent sugar phosphotransferase system [Evidence IEA]; GO:0006808 - regulation of nitrogen utilization [Evidence IEA]
phosphoenolpyruvate--protein phosphotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_007273664.1
GO:0009401 - phosphoenolpyruvate-dependent sugar phosphotransferase system [Evidence IEA]
COORDINATES: protein motif:HMM:NF019310.2
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014050806.1
GO:0008236 - serine-type peptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007274843.1
COORDINATES: similar to AA sequence:RefSeq:WP_006431575.1
COORDINATES: similar to AA sequence:RefSeq:WP_008367952.1
COORDINATES: similar to AA sequence:RefSeq:WP_007696428.1
COORDINATES: similar to AA sequence:RefSeq:WP_006649179.1
COORDINATES: similar to AA sequence:RefSeq:WP_007698033.1
COORDINATES: protein motif:HMM:NF012311.2
COORDINATES: similar to AA sequence:RefSeq:WP_008417254.1
COORDINATES: protein motif:HMM:NF016071.2
pre-peptidase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004267694.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - DNA transposition [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004267695.1
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017677074.1
GO:0004420 - hydroxymethylglutaryl-CoA reductase (NADPH) activity [Evidence IEA]
GO:0016054 - organic acid catabolic process [Evidence IEA]
hydroxymethylglutaryl-CoA reductase, degradative
COORDINATES: similar to AA sequence:RefSeq:WP_008895308.1
COORDINATES: similar to AA sequence:RefSeq:WP_006667810.1
GO:0016208 - AMP binding [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF012791.2
GO:0032559 - adenyl ribonucleotide binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF014710.2
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007979268.1
COORDINATES: similar to AA sequence:RefSeq:WP_009488135.1
COORDINATES: similar to AA sequence:RefSeq:WP_005555919.1
COORDINATES: protein motif:HMM:TIGR04474.1
COORDINATES: similar to AA sequence:RefSeq:WP_013881829.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0003824 - catalytic activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF024811.2
COORDINATES: protein motif:HMM:NF033545.0
COORDINATES: protein motif:HMM:NF024940.2
COORDINATES: similar to AA sequence:RefSeq:WP_006114162.1
COORDINATES: similar to AA sequence:RefSeq:WP_007276023.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_006648201.1
GO:0004521 - RNA endonuclease activity [Evidence IEA]
GO:0043571 - maintenance of CRISPR repeat elements [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008324573.1
GO:0004520 - DNA endonuclease activity [Evidence IEA]
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
type I-B CRISPR-associated endonuclease Cas1b
COORDINATES: protein motif:HMM:TIGR01596.1
COORDINATES: similar to AA sequence:RefSeq:WP_018258162.1
COORDINATES: similar to AA sequence:RefSeq:WP_008576917.1
COORDINATES: similar to AA sequence:RefSeq:WP_018258160.1
GO:0003674 - molecular_function [Evidence IEA]
type I-B CRISPR-associated protein Cas7/Csh2
COORDINATES: similar to AA sequence:RefSeq:WP_008452273.1
type I-B CRISPR-associated protein Cas5b
COORDINATES: protein motif:HMM:NF012936.2
COORDINATES: protein motif:HMM:NF013775.2
COORDINATES: similar to AA sequence:RefSeq:WP_005046133.1
GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015869085.1
COORDINATES: similar to AA sequence:RefSeq:WP_005038541.1
COORDINATES: similar to AA sequence:RefSeq:WP_009486601.1
COORDINATES: similar to AA sequence:RefSeq:WP_006667126.1
COORDINATES: similar to AA sequence:RefSeq:WP_004595756.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004048281.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014030823.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007543824.1
GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF028293.2
COORDINATES: similar to AA sequence:RefSeq:WP_013879092.1
COORDINATES: similar to AA sequence:RefSeq:WP_006432936.1
vitamin K epoxide reductase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006432937.1
COORDINATES: similar to AA sequence:RefSeq:WP_015299341.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006110159.1
COORDINATES: similar to AA sequence:RefSeq:WP_006110158.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006110157.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007736442.1
COORDINATES: similar to AA sequence:RefSeq:WP_009377406.1
COORDINATES: similar to AA sequence:RefSeq:WP_008310257.1
COORDINATES: protein motif:HMM:NF018827.2
COORDINATES: protein motif:HMM:NF022783.2
COORDINATES: protein motif:HMM:NF036897.2
COORDINATES: similar to AA sequence:RefSeq:WP_015321139.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895808.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945735.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222755.1
GO:0004156 - dihydropteroate synthase activity [Evidence IEA]
GO:0009396 - folic acid-containing compound biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006433168.1
GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006433167.1
COORDINATES: similar to AA sequence:RefSeq:WP_004061970.1
GO:0019239 - deaminase activity [Evidence IEA]
GO:0008152 - metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008895802.1
GO:0004372 - glycine hydroxymethyltransferase activity [Evidence IEA]; GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO:0070905 - serine binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO:0019264 - glycine biosynthetic process from serine [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006088380.1
GO:0071705 - nitrogen compound transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008895800.1
GO:0004794 - L-threonine ammonia-lyase activity [Evidence IEA]
GO:0006549 - isoleucine metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011222752.1
COORDINATES: similar to AA sequence:RefSeq:WP_013880628.1
GO:0004488 - methylenetetrahydrofolate dehydrogenase (NADP+) activity [Evidence IEA]
tetrahydrofolate dehydrogenase/cyclohydrolase catalytic domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007190533.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945757.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945726.1
COORDINATES: similar to AA sequence:RefSeq:WP_007190565.1
GO:0046820 - 4-amino-4-deoxychorismate synthase activity [Evidence IEA]; GO:0004049 - anthranilate synthase activity [Evidence IEA]
GO:0000162 - tryptophan biosynthetic process [Evidence IEA]
Members of this family of hydrolases with an active site Cys residue belong to MEROPS family C26; Derived by automated computational analysis using gene prediction method: Protein Homology.
aminodeoxychorismate/anthranilate synthase component II
COORDINATES: similar to AA sequence:RefSeq:WP_004965996.1
GO:0046872 - metal ion binding [Evidence IEA]
anthranilate synthase component I family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008573032.1
aromatic ring-hydroxylating dioxygenase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_006433174.1
COORDINATES: similar to AA sequence:RefSeq:WP_015322487.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]
GO:0044237 - cellular metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004968636.1
glutathione-independent formaldehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_004594827.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895815.1
COORDINATES: similar to AA sequence:RefSeq:WP_006433184.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]
NADH-ubiquinone oxidoreductase-F iron-sulfur binding region domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_020222127.1
2Fe-2S iron-sulfur cluster-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_020222128.1
GO:0009326 - formate dehydrogenase complex [Evidence IEA]
GO:0008863 - formate dehydrogenase (NAD+) activity [Evidence IEA]
GO:0015942 - formate metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF019464.2
COORDINATES: similar to AA sequence:RefSeq:WP_008895843.1
COORDINATES: similar to AA sequence:RefSeq:WP_015408557.1
COORDINATES: similar to AA sequence:RefSeq:WP_006180945.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008425006.1
glycoside hydrolase family 2 TIM barrel-domain containing protein
COORDINATES: protein motif:HMM:NF013757.2
IclR family transcriptional regulator C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF027224.2
COORDINATES: protein motif:HMM:NF014926.2
COORDINATES: similar to AA sequence:RefSeq:WP_007693926.1
COORDINATES: similar to AA sequence:RefSeq:WP_007693924.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007997753.1
GO:0008643 - carbohydrate transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007693920.1
COORDINATES: similar to AA sequence:RefSeq:WP_018258943.1
COORDINATES: similar to AA sequence:RefSeq:WP_015764199.1
COORDINATES: similar to AA sequence:RefSeq:WP_008892483.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594385.1
COORDINATES: similar to AA sequence:RefSeq:WP_004965897.1
COORDINATES: similar to AA sequence:RefSeq:WP_007274249.1
GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0016651 - oxidoreductase activity, acting on NAD(P)H [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018258933.1
COORDINATES: protein motif:HMM:NF015605.2
COORDINATES: similar to AA sequence:RefSeq:WP_004216228.1
COORDINATES: similar to AA sequence:RefSeq:WP_018885225.1
COORDINATES: protein motif:HMM:NF012859.2
COORDINATES: similar to AA sequence:RefSeq:WP_004967251.1
COORDINATES: similar to AA sequence:RefSeq:WP_004967252.1
GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009378099.1
COORDINATES: similar to AA sequence:RefSeq:WP_006666214.1
COORDINATES: similar to AA sequence:RefSeq:WP_012944098.1
COORDINATES: similar to AA sequence:RefSeq:WP_007694266.1
COORDINATES: protein motif:HMM:NF015325.2
GO:0010181 - FMN binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012795421.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060155.1
COORDINATES: similar to AA sequence:RefSeq:WP_012895224.1
GO:0004177 - aminopeptidase activity [Evidence IEA]
GO:0030163 - protein catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF019013.2
COORDINATES: protein motif:HMM:NF014790.2
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF014789.2
COORDINATES: protein motif:HMM:NF019544.2
COORDINATES: protein motif:HMM:NF018213.2
putative glycolipid-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007976970.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007691530.1
COORDINATES: similar to AA sequence:RefSeq:WP_006824959.1
GO:0006865 - amino acid transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007260607.1
COORDINATES: similar to AA sequence:RefSeq:WP_007276530.1
COORDINATES: similar to AA sequence:RefSeq:WP_011572750.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
MarR family winged helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_009488254.1
COORDINATES: protein motif:HMM:NF040013.1
COORDINATES: similar to AA sequence:RefSeq:WP_014030790.1
COORDINATES: protein motif:HMM:NF012981.2
GO:0016301 - kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006076142.1
GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008893971.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183330.1
COORDINATES: protein motif:HMM:NF014443.2
GO:0008324 - monoatomic cation transmembrane transporter activity [Evidence IEA]
GO:0006812 - monoatomic cation transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013880895.1
COORDINATES: similar to AA sequence:RefSeq:WP_013879100.1
COORDINATES: similar to AA sequence:RefSeq:WP_007694968.1
COORDINATES: similar to AA sequence:RefSeq:WP_007692632.1
GO:0003825 - alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006824923.1
COORDINATES: similar to AA sequence:RefSeq:WP_020818394.1
COORDINATES: similar to AA sequence:RefSeq:WP_006885094.1
TFIIB-type zinc ribbon-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005041108.1
COORDINATES: similar to AA sequence:RefSeq:WP_004591592.1
COORDINATES: similar to AA sequence:RefSeq:WP_004214160.1
COORDINATES: similar to AA sequence:RefSeq:WP_015910608.1
COORDINATES: protein motif:HMM:NF021616.2
COORDINATES: protein motif:HMM:NF017773.2
COORDINATES: similar to AA sequence:RefSeq:WP_006092047.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_004965900.1
GO:0016301 - kinase activity [Evidence IEA]; GO:0022877 - protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity [Evidence IEA]
GO:0009401 - phosphoenolpyruvate-dependent sugar phosphotransferase system [Evidence IEA]; GO:0016310 - phosphorylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008424745.1
COORDINATES: similar to AA sequence:RefSeq:WP_004965902.1
COORDINATES: similar to AA sequence:RefSeq:WP_005533050.1
GO:1902495 - transmembrane transporter complex [Evidence IEA]
GO:0008643 - carbohydrate transport [Evidence IEA]; GO:0009401 - phosphoenolpyruvate-dependent sugar phosphotransferase system [Evidence IEA]; GO:0016310 - phosphorylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006106847.1
COORDINATES: similar to AA sequence:RefSeq:WP_006824217.1
GO:0008662 - 1-phosphofructokinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008574260.1
GO:0006006 - glucose metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012996429.1
COORDINATES: similar to AA sequence:RefSeq:WP_005045038.1
COORDINATES: similar to AA sequence:RefSeq:WP_014031023.1
COORDINATES: similar to AA sequence:RefSeq:WP_007190232.1
hydantoinase/oxoprolinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008442425.1
hydantoinase B/oxoprolinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007110966.1
GO:0036361 - racemase activity, acting on amino acids and derivatives [Evidence IEA]
GO:0006807 - nitrogen compound metabolic process [Evidence IEA]
aspartate/glutamate racemase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013440732.1
COORDINATES: similar to AA sequence:RefSeq:WP_006432922.1
COORDINATES: similar to AA sequence:RefSeq:WP_008162832.1
COORDINATES: similar to AA sequence:RefSeq:WP_005039248.1
COORDINATES: similar to AA sequence:RefSeq:WP_008893567.1
COORDINATES: similar to AA sequence:RefSeq:WP_006826691.1
COORDINATES: similar to AA sequence:RefSeq:WP_020221761.1
COORDINATES: similar to AA sequence:RefSeq:WP_006077526.1
COORDINATES: similar to AA sequence:RefSeq:WP_006342082.1
GO:0016209 - antioxidant activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006107255.1
formate/nitrite transporter family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013879106.1
COORDINATES: similar to AA sequence:RefSeq:WP_008421800.1
COORDINATES: similar to AA sequence:RefSeq:WP_005554684.1
COORDINATES: similar to AA sequence:RefSeq:WP_008421797.1
COORDINATES: similar to AA sequence:RefSeq:WP_008421792.1
GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0140662 - ATP-dependent protein folding chaperone [Evidence IEA]
COORDINATES: protein motif:HMM:NF013528.2
GO:0008441 - 3'(2'),5'-bisphosphate nucleotidase activity [Evidence IEA]; GO:0004527 - exonuclease activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
bifunctional oligoribonuclease/PAP phosphatase NrnA
COORDINATES: similar to AA sequence:RefSeq:WP_012945667.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008417253.1
COORDINATES: similar to AA sequence:RefSeq:WP_005044613.1
COORDINATES: similar to AA sequence:RefSeq:WP_004041006.1
COORDINATES: similar to AA sequence:RefSeq:WP_018257573.1
COORDINATES: similar to AA sequence:RefSeq:WP_006824171.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006106753.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008322056.1
COORDINATES: similar to AA sequence:RefSeq:WP_008572369.1
energy-coupling factor ABC transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_008572367.1
COORDINATES: similar to AA sequence:RefSeq:WP_008572365.1
energy-coupling factor transporter transmembrane component T
COORDINATES: similar to AA sequence:RefSeq:WP_018257566.1
energy-coupling factor ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_006667691.1
COORDINATES: similar to AA sequence:RefSeq:WP_008572360.1
COORDINATES: similar to AA sequence:RefSeq:WP_008572359.1
COORDINATES: similar to AA sequence:RefSeq:WP_014555941.1
COORDINATES: similar to AA sequence:RefSeq:WP_008439983.1
GO:0008168 - methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014030994.1
COORDINATES: similar to AA sequence:RefSeq:WP_006055867.1
COORDINATES: similar to AA sequence:RefSeq:WP_006826872.1
COORDINATES: similar to AA sequence:RefSeq:WP_008578804.1
COORDINATES: similar to AA sequence:RefSeq:WP_008319504.1
COORDINATES: similar to AA sequence:RefSeq:WP_008459217.1
COORDINATES: similar to AA sequence:RefSeq:WP_008322065.1
COORDINATES: protein motif:HMM:NF013080.2
GO:0008484 - sulfuric ester hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005537870.1
COORDINATES: similar to AA sequence:RefSeq:WP_008606628.1
COORDINATES: protein motif:HMM:NF015448.2
GO:0004826 - phenylalanine-tRNA ligase activity [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
phenylalanine--tRNA ligase beta subunit-related protein
COORDINATES: similar to AA sequence:RefSeq:WP_007143049.1
type 2 lanthipeptide synthetase LanM family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013035722.1
COORDINATES: similar to AA sequence:RefSeq:WP_012943438.1
COORDINATES: similar to AA sequence:RefSeq:WP_006055975.1
COORDINATES: similar to AA sequence:RefSeq:WP_007696247.1
aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_006826328.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0030151 - molybdenum ion binding [Evidence IEA]; GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006076491.1
COORDINATES: similar to AA sequence:RefSeq:WP_006091105.1
COORDINATES: similar to AA sequence:RefSeq:WP_018128937.1
COORDINATES: similar to AA sequence:RefSeq:WP_015320554.1
GO:0020037 - heme binding [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009762325.1
COORDINATES: similar to AA sequence:RefSeq:WP_007736777.1
COORDINATES: protein motif:HMM:NF016214.2
COORDINATES: similar to AA sequence:RefSeq:WP_009733124.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors [Evidence IEA]
GMC family oxidoreductase N-terminal domain-containing protein