Paenarthrobacter nicotinovorans strain ATCC 49919 plasmid pAO1, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Micrococcales; Micrococcaceae; Paenarthrobacter.
Sequencing the genome of a useful bacteria: Paenarthrobacter nicotinovorans - next step in extending its biotechnological applications
Submitted (07-DEC-2021) Biology, Alexandru Ioan Cuza University of Iasi, Carol I Bvd 20A, Iasi 700505, Romania
REFSEQ INFORMATION: The reference sequence is identical to\nCP089294.1.\nBacteria and source DNA available from Marius Mihasan, BioActive\nGroup or ATCC 49919.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 2021\nAssembly Method :: Unicycler v. v0.4.9\nAssembly Name :: UAIC_BIO_Pnic_3.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 340000.0x\nSequencing Technology :: Illumina NovaSeq; Oxford Nanopore MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/11/2023 23:56:10\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,180\nCDSs (total) :: 4,105\nGenes (coding) :: 4,076\nCDSs (with protein) :: 4,076\nGenes (RNA) :: 75\nrRNAs :: 6, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 6, 6 (5S, 16S, 23S)\ntRNAs :: 54\nncRNAs :: 3\nPseudo Genes (total) :: 29\nCDSs (without protein) :: 29\nPseudo Genes (ambiguous residues) :: 0 of 29\nPseudo Genes (frameshifted) :: 12 of 29\nPseudo Genes (incomplete) :: 16 of 29\nPseudo Genes (internal stop) :: 5 of 29\nPseudo Genes (multiple problems) :: 3 of 29\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Paenarthrobacter nicotinovorans
COORDINATES: similar to AA sequence:RefSeq:WP_011689809.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_018779737.1
COORDINATES: similar to AA sequence:RefSeq:WP_014923561.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_076612336.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011689693.1
COORDINATES: similar to AA sequence:RefSeq:WP_011689694.1
COORDINATES: similar to AA sequence:RefSeq:WP_002686343.1
COORDINATES: similar to AA sequence:RefSeq:WP_017199309.1
COORDINATES: similar to AA sequence:RefSeq:WP_002857200.1
COORDINATES: similar to AA sequence:RefSeq:WP_016463913.1
Mu transposase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019483745.1
COORDINATES: similar to AA sequence:RefSeq:WP_008598614.1
COORDINATES: similar to AA sequence:RefSeq:WP_006361009.1
adenylate/guanylate cyclase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017589429.1
COORDINATES: similar to AA sequence:RefSeq:WP_010205000.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF019371.2
COORDINATES: protein motif:HMM:NF013252.2
COORDINATES: similar to AA sequence:RefSeq:WP_013603184.1
GO:0009294 - DNA-mediated transformation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017200351.1
COORDINATES: similar to AA sequence:RefSeq:WP_018762470.1
COORDINATES: protein motif:HMM:NF024109.2
COORDINATES: similar to AA sequence:RefSeq:WP_013585252.1
GO:0050053 - levansucrase activity [Evidence IEA]
GO:0009758 - carbohydrate utilization [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018763892.1
COORDINATES: protein motif:HMM:NF012312.2
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF024770.2
LacI family DNA-binding transcriptional regulator
COORDINATES: protein motif:HMM:NF014273.2
ParB N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017200478.1
COORDINATES: similar to AA sequence:RefSeq:WP_018780306.1
COORDINATES: similar to AA sequence:RefSeq:WP_018780301.1
COORDINATES: similar to AA sequence:RefSeq:WP_018780299.1
plasmid mobilization relaxosome protein MobC
COORDINATES: similar to AA sequence:RefSeq:WP_018780298.1
relaxase/mobilization nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011777150.1
COORDINATES: similar to AA sequence:RefSeq:WP_005268113.1
COORDINATES: similar to AA sequence:RefSeq:WP_018778407.1
COORDINATES: similar to AA sequence:RefSeq:WP_018779706.1
sigma-70 family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_016935307.1
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
COORDINATES: protein motif:HMM:NF024907.2
COORDINATES: protein motif:HMM:NF024949.2
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF019421.2
type II toxin-antitoxin system HipA family toxin
COORDINATES: protein motif:HMM:NF019349.2
COORDINATES: similar to AA sequence:RefSeq:WP_005269912.1
sugar ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_013599266.1
involved in ribose/xylose/arabinose/galactoside ABC-type transport
COORDINATES: similar to AA sequence:RefSeq:WP_013599267.1
COORDINATES: similar to AA sequence:RefSeq:WP_013599268.1
substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013599270.1
COORDINATES: similar to AA sequence:RefSeq:WP_020075570.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013599272.1
COORDINATES: similar to AA sequence:RefSeq:WP_013599273.1
dihydrodipicolinate synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013599274.1
COORDINATES: protein motif:HMM:NF012492.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF020452.2
COORDINATES: similar to AA sequence:RefSeq:WP_010850170.1
COORDINATES: similar to AA sequence:RefSeq:WP_007172192.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007172193.1
COORDINATES: similar to AA sequence:RefSeq:WP_007172194.1
COORDINATES: similar to AA sequence:RefSeq:WP_009359445.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013603167.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013603166.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_016359423.1
COORDINATES: similar to AA sequence:RefSeq:WP_019969488.1
COORDINATES: similar to AA sequence:RefSeq:WP_017200535.1
COORDINATES: similar to AA sequence:RefSeq:WP_017200533.1
NAD-dependent succinate-semialdehyde dehydrogenase
COORDINATES: protein motif:HMM:NF021856.2
COORDINATES: protein motif:HMM:NF013706.2
fumarylacetoacetate hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_020137641.1
COORDINATES: similar to AA sequence:RefSeq:WP_009357515.1
GO:0004488 - methylenetetrahydrofolate dehydrogenase (NADP+) activity [Evidence IEA]
bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase
COORDINATES: similar to AA sequence:RefSeq:WP_013861353.1
COORDINATES: similar to AA sequence:RefSeq:WP_016359433.1
GO:0008864 - formyltetrahydrofolate deformylase activity [Evidence IEA]
GO:0009152 - purine ribonucleotide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017200496.1
COORDINATES: similar to AA sequence:RefSeq:WP_020372852.1
COORDINATES: similar to AA sequence:RefSeq:WP_020372851.1
COORDINATES: similar to AA sequence:RefSeq:WP_003798333.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017200526.1
COORDINATES: similar to AA sequence:RefSeq:WP_007076820.1
COORDINATES: similar to AA sequence:RefSeq:WP_009357523.1
COORDINATES: similar to AA sequence:RefSeq:WP_011757402.1
COORDINATES: similar to AA sequence:RefSeq:WP_009357525.1
COORDINATES: similar to AA sequence:RefSeq:WP_009357526.1
COORDINATES: similar to AA sequence:RefSeq:WP_016359448.1
COORDINATES: similar to AA sequence:RefSeq:WP_019860216.1
COORDINATES: similar to AA sequence:RefSeq:WP_017200523.1
COORDINATES: similar to AA sequence:RefSeq:WP_017200522.1
xanthine dehydrogenase family protein molybdopterin-binding subunit
COORDINATES: similar to AA sequence:RefSeq:WP_016359452.1
COORDINATES: similar to AA sequence:RefSeq:WP_016359453.1
COORDINATES: similar to AA sequence:RefSeq:WP_017200521.1
COORDINATES: similar to AA sequence:RefSeq:WP_017200520.1
COORDINATES: similar to AA sequence:RefSeq:WP_017200519.1
xanthine dehydrogenase family protein subunit M
COORDINATES: similar to AA sequence:RefSeq:WP_009357536.1
COORDINATES: similar to AA sequence:RefSeq:WP_017200517.1
COORDINATES: similar to AA sequence:RefSeq:WP_009357430.1
COORDINATES: similar to AA sequence:RefSeq:WP_032489294.1
COORDINATES: similar to AA sequence:RefSeq:WP_012689958.1
COORDINATES: similar to AA sequence:RefSeq:WP_011754081.1
COORDINATES: protein motif:HMM:NF013134.2
COORDINATES: similar to AA sequence:RefSeq:WP_003878491.1
COORDINATES: similar to AA sequence:RefSeq:WP_009357543.1
COORDINATES: similar to AA sequence:RefSeq:WP_011774286.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]
GO:0006777 - Mo-molybdopterin cofactor biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018763646.1
COORDINATES: similar to AA sequence:RefSeq:WP_017200507.1
GO:0003824 - catalytic activity [Evidence IEA]
cyclic pyranopterin monophosphate synthase MoaC
COORDINATES: similar to AA sequence:RefSeq:WP_017200506.1
molybdenum cofactor biosynthesis protein MoaE
COORDINATES: similar to AA sequence:RefSeq:WP_017200505.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0009897 - external side of plasma membrane [Evidence IEA]; GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0015412 - ABC-type molybdate transporter activity [Evidence IEA]; GO:0030973 - molybdate ion binding [Evidence IEA]
GO:0015689 - molybdate ion transport [Evidence IEA]
molybdate ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_017200504.1
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]
GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009358054.1
COORDINATES: similar to AA sequence:RefSeq:WP_017200500.1
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
glycoside hydrolase family 3 N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017200499.1
COORDINATES: similar to AA sequence:RefSeq:WP_017200498.1
COORDINATES: protein motif:HMM:NF015925.2
COORDINATES: similar to AA sequence:RefSeq:WP_017200494.1
COORDINATES: protein motif:HMM:NF012544.2
COORDINATES: similar to AA sequence:RefSeq:WP_017200492.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_015395043.1
COORDINATES: protein motif:HMM:NF015734.2
COORDINATES: similar to AA sequence:RefSeq:WP_014922884.1
PDDEXK nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012623555.1
COORDINATES: similar to AA sequence:RefSeq:WP_018762605.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018762606.1
COORDINATES: similar to AA sequence:RefSeq:WP_011689678.1
COORDINATES: similar to AA sequence:RefSeq:WP_018779749.1
COORDINATES: similar to AA sequence:RefSeq:WP_018779748.1
COORDINATES: similar to AA sequence:RefSeq:WP_011777317.1
COORDINATES: similar to AA sequence:RefSeq:WP_012623548.1
COORDINATES: similar to AA sequence:RefSeq:WP_018779745.1
COORDINATES: similar to AA sequence:RefSeq:WP_011777320.1