Halorientalis litorea strain ZY14 plasmid unnamed3, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Halobacteriales; Haloarculaceae; Halorientalis.
Diverse halophilic archaea isolated from saline environments
Submitted (11-APR-2022) School of Food and Biological Engineering, Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP095485.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 4\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 276.0x\nSequencing Technology :: PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 08/17/2022 01:51:09\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.2\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 3,382\nCDSs (total) :: 3,331\nGenes (coding) :: 3,282\nCDSs (with protein) :: 3,282\nGenes (RNA) :: 51\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 46\nncRNAs :: 2\nPseudo Genes (total) :: 49\nCDSs (without protein) :: 49\nPseudo Genes (ambiguous residues) :: 0 of 49\nPseudo Genes (frameshifted) :: 12 of 49\nPseudo Genes (incomplete) :: 42 of 49\nPseudo Genes (internal stop) :: 5 of 49\nPseudo Genes (multiple problems) :: 9 of 49\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_008387649.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008458671.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594626.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
phage integrase SAM-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004595762.1
COORDINATES: protein motif:HMM:NF024603.2
COORDINATES: protein motif:HMM:NF027245.2
COORDINATES: similar to AA sequence:RefSeq:WP_004966871.1
COORDINATES: similar to AA sequence:RefSeq:WP_015911480.1
COORDINATES: similar to AA sequence:RefSeq:WP_004055789.1
COORDINATES: protein motif:HMM:NF012301.2
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: protein motif:HMM:NF036897.2
COORDINATES: protein motif:HMM:NF024583.2
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:TIGR00229.1
COORDINATES: similar to AA sequence:RefSeq:WP_005555314.1
COORDINATES: similar to AA sequence:RefSeq:WP_008159055.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
type II toxin-antitoxin system PemK/MazF family toxin
COORDINATES: protein motif:HMM:NF024118.2
COORDINATES: similar to AA sequence:RefSeq:WP_008364405.1
GO:0009318 - exodeoxyribonuclease VII complex [Evidence IEA]
GO:0008855 - exodeoxyribonuclease VII activity [Evidence IEA]
GO:0006308 - DNA catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008364406.1
COORDINATES: similar to AA sequence:RefSeq:WP_008364407.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053094.1
COORDINATES: similar to AA sequence:RefSeq:WP_008364410.1
COORDINATES: similar to AA sequence:RefSeq:WP_009488208.1
COORDINATES: similar to AA sequence:RefSeq:WP_009488207.1
COORDINATES: similar to AA sequence:RefSeq:WP_008444896.1
COORDINATES: similar to AA sequence:RefSeq:WP_010904033.1
VirB4 family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_009762230.1
COORDINATES: similar to AA sequence:RefSeq:WP_014865841.1
COORDINATES: similar to AA sequence:RefSeq:WP_008458711.1
COORDINATES: similar to AA sequence:RefSeq:WP_007143091.1
COORDINATES: similar to AA sequence:RefSeq:WP_010904232.1
COORDINATES: similar to AA sequence:RefSeq:WP_013881810.1
COORDINATES: similar to AA sequence:RefSeq:WP_004971372.1
COORDINATES: similar to AA sequence:RefSeq:WP_014555704.1
COORDINATES: similar to AA sequence:RefSeq:WP_008458724.1
COORDINATES: similar to AA sequence:RefSeq:WP_007143097.1
COORDINATES: similar to AA sequence:RefSeq:WP_017342075.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183460.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF023075.2
group I intron-associated PD-(D/E)XK endonuclease
COORDINATES: similar to AA sequence:RefSeq:WP_004517762.1
transcription initiation factor IIB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011222448.1
COORDINATES: similar to AA sequence:RefSeq:WP_004043413.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222449.1
COORDINATES: similar to AA sequence:RefSeq:WP_004043411.1
COORDINATES: similar to AA sequence:RefSeq:WP_015911565.1
COORDINATES: similar to AA sequence:RefSeq:WP_006825394.1
COORDINATES: similar to AA sequence:RefSeq:WP_015321865.1
RNA-guided endonuclease TnpB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008526037.1
COORDINATES: similar to AA sequence:RefSeq:WP_008849553.1
PAS domain-containing sensor histidine kinase
COORDINATES: protein motif:HMM:NF014567.2
HAMP domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_008095965.1
COORDINATES: similar to AA sequence:RefSeq:WP_008094333.1
COORDINATES: similar to AA sequence:RefSeq:WP_008444947.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594499.1
COORDINATES: similar to AA sequence:RefSeq:WP_004048588.1
COORDINATES: similar to AA sequence:RefSeq:WP_008318147.1
DUF2080 family transposase-associated protein
COORDINATES: similar to AA sequence:RefSeq:WP_005558189.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612288.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013757.2
COORDINATES: similar to AA sequence:RefSeq:WP_015408557.1
COORDINATES: similar to AA sequence:RefSeq:WP_013035120.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611983.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006092067.1
GO:0070403 - NAD+ binding [Evidence IEA]
GO:0006631 - fatty acid metabolic process [Evidence IEA]
3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006092094.1
COORDINATES: similar to AA sequence:RefSeq:WP_006092095.1
beta-ketoacyl synthase N-terminal-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015949835.1
COORDINATES: similar to AA sequence:RefSeq:WP_019992151.1
COORDINATES: protein motif:HMM:NF024844.2
COORDINATES: similar to AA sequence:RefSeq:WP_009367710.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011222456.1
COORDINATES: similar to AA sequence:RefSeq:WP_015911446.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
GO:0009307 - DNA restriction-modification system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010904071.1
type II toxin-antitoxin system Phd/YefM family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_006168173.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_013881859.1
HNH endonuclease signature motif containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008458761.1
COORDINATES: similar to AA sequence:RefSeq:WP_008458763.1
COORDINATES: similar to AA sequence:RefSeq:WP_004966420.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594490.1
COORDINATES: similar to AA sequence:RefSeq:WP_008458768.1
COORDINATES: protein motif:HMM:NF023580.2
COORDINATES: similar to AA sequence:RefSeq:WP_008458055.1
COORDINATES: similar to AA sequence:RefSeq:WP_008608850.1
COORDINATES: protein motif:HMM:NF037417.2
COORDINATES: similar to AA sequence:RefSeq:WP_006183343.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183342.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183341.1
COORDINATES: similar to AA sequence:RefSeq:WP_008446335.1
ArdC-like ssDNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006825214.1
COORDINATES: similar to AA sequence:RefSeq:WP_006054726.1
COORDINATES: similar to AA sequence:RefSeq:WP_006825217.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008446344.1
COORDINATES: similar to AA sequence:RefSeq:WP_014030725.1
orc1/cdc6 family replication initiation protein
COORDINATES: similar to AA sequence:RefSeq:WP_014865875.1
COORDINATES: similar to AA sequence:RefSeq:WP_004514844.1
COORDINATES: similar to AA sequence:RefSeq:WP_004514843.1
COORDINATES: similar to AA sequence:RefSeq:WP_006056670.1
COORDINATES: similar to AA sequence:RefSeq:WP_004043364.1
COORDINATES: similar to AA sequence:RefSeq:WP_008458786.1
COORDINATES: protein motif:HMM:NF039863.1
COORDINATES: protein motif:HMM:NF024117.2
COORDINATES: protein motif:HMM:NF012492.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004514830.1
COORDINATES: similar to AA sequence:RefSeq:WP_004514829.1
GO:0008616 - queuosine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004514828.1
COORDINATES: similar to AA sequence:RefSeq:WP_004595531.1
COORDINATES: similar to AA sequence:RefSeq:WP_020221625.1
6-pyruvoyl tetrahydropterin synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004514824.1
queuine tRNA-ribosyltransferase tRNA-guanine transglycosylase
COORDINATES: protein motif:HMM:NF013835.2
COORDINATES: similar to AA sequence:RefSeq:WP_008893490.1
COORDINATES: similar to AA sequence:RefSeq:WP_004514821.1
DUF2791 family P-loop domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004514820.1
winged helix-turn-helix domain-containing protein