Halorientalis litorea strain ZY14 plasmid unnamed2, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Halobacteriales; Haloarculaceae; Halorientalis.
Diverse halophilic archaea isolated from saline environments
Submitted (11-APR-2022) School of Food and Biological Engineering, Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP095484.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 4\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 276.0x\nSequencing Technology :: PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 08/17/2022 01:51:09\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.2\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 3,382\nCDSs (total) :: 3,331\nGenes (coding) :: 3,282\nCDSs (with protein) :: 3,282\nGenes (RNA) :: 51\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 46\nncRNAs :: 2\nPseudo Genes (total) :: 49\nCDSs (without protein) :: 49\nPseudo Genes (ambiguous residues) :: 0 of 49\nPseudo Genes (frameshifted) :: 12 of 49\nPseudo Genes (incomplete) :: 42 of 49\nPseudo Genes (internal stop) :: 5 of 49\nPseudo Genes (multiple problems) :: 9 of 49\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_006065891.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007143119.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_013035182.1
COORDINATES: similar to AA sequence:RefSeq:WP_008446344.1
COORDINATES: similar to AA sequence:RefSeq:WP_012289741.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008524572.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053212.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008524575.1
COORDINATES: similar to AA sequence:RefSeq:WP_006184813.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008524579.1
COORDINATES: similar to AA sequence:RefSeq:WP_008524581.1
ArdC-like ssDNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006183341.1
COORDINATES: similar to AA sequence:RefSeq:WP_004517739.1
COORDINATES: similar to AA sequence:RefSeq:WP_006184809.1
dihydrodipicolinate synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004594490.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594491.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183439.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053521.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006184805.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183441.1
COORDINATES: similar to AA sequence:RefSeq:WP_008524600.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594496.1
COORDINATES: similar to AA sequence:RefSeq:WP_004048585.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183361.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594499.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183447.1
COORDINATES: similar to AA sequence:RefSeq:WP_011224910.1
COORDINATES: similar to AA sequence:RefSeq:WP_006825399.1
COORDINATES: similar to AA sequence:RefSeq:WP_006825398.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183451.1
COORDINATES: similar to AA sequence:RefSeq:WP_004048595.1
COORDINATES: similar to AA sequence:RefSeq:WP_006186970.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183453.1
COORDINATES: similar to AA sequence:RefSeq:WP_006184794.1
transcription initiation factor IIB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014053422.1
COORDINATES: similar to AA sequence:RefSeq:WP_007276504.1
COORDINATES: similar to AA sequence:RefSeq:WP_013035055.1
COORDINATES: similar to AA sequence:RefSeq:WP_015310233.1
COORDINATES: similar to AA sequence:RefSeq:WP_013881810.1
COORDINATES: similar to AA sequence:RefSeq:WP_007143091.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053427.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053428.1
COORDINATES: similar to AA sequence:RefSeq:WP_009488205.1
COORDINATES: similar to AA sequence:RefSeq:WP_008444896.1
COORDINATES: similar to AA sequence:RefSeq:WP_009488207.1
COORDINATES: similar to AA sequence:RefSeq:WP_009488208.1
COORDINATES: similar to AA sequence:RefSeq:WP_009488209.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053094.1
COORDINATES: similar to AA sequence:RefSeq:WP_008606465.1
COORDINATES: similar to AA sequence:RefSeq:WP_008364406.1
GO:0009318 - exodeoxyribonuclease VII complex [Evidence IEA]
GO:0008855 - exodeoxyribonuclease VII activity [Evidence IEA]
GO:0006308 - DNA catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008364405.1
COORDINATES: similar to AA sequence:RefSeq:WP_007538724.1
COORDINATES: protein motif:HMM:NF012234.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF021622.2
COORDINATES: similar to AA sequence:RefSeq:WP_007143082.1
COORDINATES: protein motif:HMM:NF012572.2
COORDINATES: similar to AA sequence:RefSeq:WP_007188151.1
COORDINATES: similar to AA sequence:RefSeq:WP_004516383.1
COORDINATES: similar to AA sequence:RefSeq:WP_007143074.1
COORDINATES: similar to AA sequence:RefSeq:WP_007143073.1
COORDINATES: similar to AA sequence:RefSeq:WP_007143072.1
COORDINATES: similar to AA sequence:RefSeq:WP_006065903.1
COORDINATES: similar to AA sequence:RefSeq:WP_007143070.1
COORDINATES: similar to AA sequence:RefSeq:WP_012996351.1
COORDINATES: similar to AA sequence:RefSeq:WP_009486642.1
COORDINATES: similar to AA sequence:RefSeq:WP_006090786.1
COORDINATES: protein motif:HMM:NF024117.2
COORDINATES: similar to AA sequence:RefSeq:WP_008006099.1
COORDINATES: similar to AA sequence:RefSeq:WP_007738397.1
COORDINATES: similar to AA sequence:RefSeq:WP_007738400.1
COORDINATES: similar to AA sequence:RefSeq:WP_005580445.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
ADP-ribosylglycohydrolase family protein
COORDINATES: protein motif:HMM:NF024128.2
COORDINATES: similar to AA sequence:RefSeq:WP_017342055.1
COORDINATES: protein motif:HMM:NF024571.2
COORDINATES: protein motif:HMM:NF016724.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006826454.1
COORDINATES: protein motif:HMM:NF037510.2
COORDINATES: similar to AA sequence:RefSeq:WP_004057474.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008445014.1