Halorientalis litorea strain ZY14 plasmid unnamed1, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Halobacteriales; Haloarculaceae; Halorientalis.
Diverse halophilic archaea isolated from saline environments
Submitted (11-APR-2022) School of Food and Biological Engineering, Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP095483.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 4\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 276.0x\nSequencing Technology :: PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 08/17/2022 01:51:09\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.2\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 3,382\nCDSs (total) :: 3,331\nGenes (coding) :: 3,282\nCDSs (with protein) :: 3,282\nGenes (RNA) :: 51\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 46\nncRNAs :: 2\nPseudo Genes (total) :: 49\nCDSs (without protein) :: 49\nPseudo Genes (ambiguous residues) :: 0 of 49\nPseudo Genes (frameshifted) :: 12 of 49\nPseudo Genes (incomplete) :: 42 of 49\nPseudo Genes (internal stop) :: 5 of 49\nPseudo Genes (multiple problems) :: 9 of 49\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_020221361.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007981092.1
COORDINATES: similar to AA sequence:RefSeq:WP_015910702.1
COORDINATES: similar to AA sequence:RefSeq:WP_005536845.1
COORDINATES: similar to AA sequence:RefSeq:WP_008896465.1
COORDINATES: similar to AA sequence:RefSeq:WP_006652796.1
orc1/cdc6 family replication initiation protein
COORDINATES: similar to AA sequence:RefSeq:WP_006183368.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_007695038.1
COORDINATES: similar to AA sequence:RefSeq:WP_018258960.1
COORDINATES: similar to AA sequence:RefSeq:WP_004967235.1
COORDINATES: similar to AA sequence:RefSeq:WP_006884339.1
GO:0003824 - catalytic activity [Evidence IEA]
NAD-dependent epimerase/dehydratase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007695027.1
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006168803.1
COORDINATES: similar to AA sequence:RefSeq:WP_012660200.1
COORDINATES: similar to AA sequence:RefSeq:WP_015762992.1
DegT/DnrJ/EryC1/StrS family aminotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_018258961.1
COORDINATES: similar to AA sequence:RefSeq:WP_008425361.1
GO:0051287 - NAD binding [Evidence IEA]; GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO:0003979 - UDP-glucose 6-dehydrogenase activity [Evidence IEA]
GO:0000271 - polysaccharide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005575951.1
COORDINATES: similar to AA sequence:RefSeq:WP_008383229.1
COORDINATES: similar to AA sequence:RefSeq:WP_009487223.1
COORDINATES: similar to AA sequence:RefSeq:WP_007258704.1
COORDINATES: similar to AA sequence:RefSeq:WP_014031125.1
Lrp/AsnC family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_017344343.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004594718.1
proton-conducting transporter membrane subunit
COORDINATES: similar to AA sequence:RefSeq:WP_004969736.1
COORDINATES: similar to AA sequence:RefSeq:WP_011571323.1
COORDINATES: similar to AA sequence:RefSeq:WP_006627881.1
HAMP domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_008605298.1
GO:0005515 - protein binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004044656.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004044657.1
COORDINATES: protein motif:HMM:NF028237.2
COORDINATES: similar to AA sequence:RefSeq:WP_006648191.1
COORDINATES: similar to AA sequence:RefSeq:WP_008323497.1
COORDINATES: similar to AA sequence:RefSeq:WP_007344315.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_008523594.1
COORDINATES: similar to AA sequence:RefSeq:WP_008015529.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024753.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006077248.1
COORDINATES: similar to AA sequence:RefSeq:WP_008008920.1
COORDINATES: similar to AA sequence:RefSeq:WP_007980687.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004515047.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006055992.1
COORDINATES: similar to AA sequence:RefSeq:WP_015789324.1
COORDINATES: similar to AA sequence:RefSeq:WP_006667565.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012808097.1
GO:0004803 - transposase activity [Evidence IEA]
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF025030.2
COORDINATES: similar to AA sequence:RefSeq:WP_006054545.1
COORDINATES: similar to AA sequence:RefSeq:WP_006054544.1
COORDINATES: similar to AA sequence:RefSeq:WP_006054543.1
COORDINATES: similar to AA sequence:RefSeq:WP_015408706.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007344011.1
type II toxin-antitoxin system PemK/MazF family toxin
COORDINATES: protein motif:HMM:NF040120.1
COORDINATES: similar to AA sequence:RefSeq:WP_007978842.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222609.1
COORDINATES: similar to AA sequence:RefSeq:WP_004049478.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594626.1
phage integrase SAM-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006067222.1
COORDINATES: protein motif:HMM:NF013970.2
COORDINATES: protein motif:HMM:NF014723.2
COORDINATES: similar to AA sequence:RefSeq:WP_006087726.1
COORDINATES: similar to AA sequence:RefSeq:WP_007189344.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895975.1
COORDINATES: similar to AA sequence:RefSeq:WP_004595064.1
COORDINATES: similar to AA sequence:RefSeq:WP_008452453.1
COORDINATES: similar to AA sequence:RefSeq:WP_006180503.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004595068.1
COORDINATES: similar to AA sequence:RefSeq:WP_014864320.1
COORDINATES: similar to AA sequence:RefSeq:WP_014864321.1
COORDINATES: similar to AA sequence:RefSeq:WP_005581227.1
COORDINATES: protein motif:HMM:NF013088.2
GO:0016021 - integral component of membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006183946.1
3-hydroxyacyl-CoA dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015320064.1
COORDINATES: similar to AA sequence:RefSeq:WP_012944889.1
GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004267216.1
COORDINATES: protein motif:HMM:NF012607.2
COORDINATES: similar to AA sequence:RefSeq:WP_004967074.1
GO:0008152 - metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006432961.1
COORDINATES: similar to AA sequence:RefSeq:WP_004967072.1
GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
GO:0019700 - organic phosphonate catabolic process [Evidence IEA]
alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase
COORDINATES: similar to AA sequence:RefSeq:WP_004967071.1
COORDINATES: similar to AA sequence:RefSeq:WP_006432958.1
COORDINATES: similar to AA sequence:RefSeq:WP_008525128.1
alpha-D-ribose 1-methylphosphonate 5-phosphate C-P-lyase PhnJ
COORDINATES: similar to AA sequence:RefSeq:WP_008525126.1
carbon-phosphorus lyase complex subunit PhnI
COORDINATES: similar to AA sequence:RefSeq:WP_008525124.1
GO:0019634 - organic phosphonate metabolic process [Evidence IEA]
phosphonate C-P lyase system protein PhnH
COORDINATES: similar to AA sequence:RefSeq:WP_008525121.1
GO:0019634 - organic phosphonate metabolic process [Evidence IEA]; GO:0015716 - organic phosphonate transport [Evidence IEA]
phosphonate C-P lyase system protein PhnG
COORDINATES: similar to AA sequence:RefSeq:WP_014556265.1
PhnD/SsuA/transferrin family substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_004967063.1
phosphonate ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011571824.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0005887 - integral component of plasma membrane [Evidence IEA]
GO:0015416 - ABC-type phosphonate transporter activity [Evidence IEA]
GO:0015716 - organic phosphonate transport [Evidence IEA]
phosphonate ABC transporter, permease protein PhnE
COORDINATES: similar to AA sequence:RefSeq:WP_004967059.1
COORDINATES: similar to AA sequence:RefSeq:WP_011571822.1
COORDINATES: similar to AA sequence:RefSeq:WP_014556262.1
COORDINATES: similar to AA sequence:RefSeq:WP_006883670.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_004518531.1
low molecular weight phosphatase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007980303.1
COORDINATES: similar to AA sequence:RefSeq:WP_018259088.1
GO:0008490 - arsenite secondary active transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF023580.2
COORDINATES: similar to AA sequence:RefSeq:WP_004964575.1
COORDINATES: similar to AA sequence:RefSeq:WP_006431451.1
COORDINATES: similar to AA sequence:RefSeq:WP_006827935.1
COORDINATES: similar to AA sequence:RefSeq:WP_013880556.1
COORDINATES: similar to AA sequence:RefSeq:WP_007977507.1
COORDINATES: protein motif:HMM:NF012936.2
GO:0004066 - asparagine synthase (glutamine-hydrolyzing) activity [Evidence IEA]
GO:0006529 - asparagine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008324222.1
COORDINATES: similar to AA sequence:RefSeq:WP_006088406.1
COORDINATES: similar to AA sequence:RefSeq:WP_006187319.1
COORDINATES: similar to AA sequence:RefSeq:WP_005538672.1
COORDINATES: similar to AA sequence:RefSeq:WP_006884811.1
COORDINATES: protein motif:HMM:NF013080.2
COORDINATES: similar to AA sequence:RefSeq:WP_015762971.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008846923.1
COORDINATES: similar to AA sequence:RefSeq:WP_006067292.1
COORDINATES: similar to AA sequence:RefSeq:WP_006067289.1
COORDINATES: protein motif:HMM:NF019380.2
COORDINATES: similar to AA sequence:RefSeq:WP_007691608.1
COORDINATES: similar to AA sequence:RefSeq:WP_008415601.1
COORDINATES: similar to AA sequence:RefSeq:WP_008415600.1
COORDINATES: protein motif:HMM:NF019310.2
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013199632.1
carboxymuconolactone decarboxylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008415599.1
COORDINATES: similar to AA sequence:RefSeq:WP_008415596.1
COORDINATES: similar to AA sequence:RefSeq:WP_008894068.1
COORDINATES: similar to AA sequence:RefSeq:WP_006180285.1
COORDINATES: similar to AA sequence:RefSeq:WP_011493450.1
COORDINATES: similar to AA sequence:RefSeq:WP_008415595.1
COORDINATES: similar to AA sequence:RefSeq:WP_008894182.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007258828.1
COORDINATES: similar to AA sequence:RefSeq:WP_008415606.1
COORDINATES: similar to AA sequence:RefSeq:WP_008415576.1
CaiB/BaiF CoA-transferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_005861927.1
3-keto-5-aminohexanoate cleavage protein
COORDINATES: similar to AA sequence:RefSeq:WP_008415607.1
COORDINATES: similar to AA sequence:RefSeq:WP_008415608.1
COORDINATES: similar to AA sequence:RefSeq:WP_008415609.1
LLM class flavin-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_013879965.1
COORDINATES: similar to AA sequence:RefSeq:WP_008415610.1
COORDINATES: similar to AA sequence:RefSeq:WP_008415593.1
COORDINATES: similar to AA sequence:RefSeq:WP_008415592.1
COORDINATES: similar to AA sequence:RefSeq:WP_008415597.1
GO:0005215 - transporter activity [Evidence IEA]
TAXI family TRAP transporter solute-binding subunit
COORDINATES: protein motif:HMM:NF013672.2
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
polysaccharide deacetylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008415587.1
COORDINATES: similar to AA sequence:RefSeq:WP_007992619.1