Halorientalis marina strain GDY88 plasmid unnamed2, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Halobacteriales; Haloarculaceae; Halorientalis.
Diverse halophilic archaea isolated from saline environments
Submitted (11-APR-2022) School of Food and Biological Engineering, Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP095489.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 4\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 314.0x\nSequencing Technology :: PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 08/17/2022 02:44:19\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.2\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 4,838\nCDSs (total) :: 4,780\nGenes (coding) :: 4,683\nCDSs (with protein) :: 4,683\nGenes (RNA) :: 58\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 53\nncRNAs :: 2\nPseudo Genes (total) :: 97\nCDSs (without protein) :: 97\nPseudo Genes (ambiguous residues) :: 0 of 97\nPseudo Genes (frameshifted) :: 34 of 97\nPseudo Genes (incomplete) :: 73 of 97\nPseudo Genes (internal stop) :: 25 of 97\nPseudo Genes (multiple problems) :: 29 of 97\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: protein motif:HMM:NF012234.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF016232.2
COORDINATES: similar to AA sequence:RefSeq:WP_004517762.1
transcription initiation factor IIB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011222448.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222449.1
COORDINATES: similar to AA sequence:RefSeq:WP_004043411.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594506.1
COORDINATES: similar to AA sequence:RefSeq:WP_004048595.1
COORDINATES: similar to AA sequence:RefSeq:WP_004043407.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183447.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594499.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183361.1
COORDINATES: similar to AA sequence:RefSeq:WP_004048585.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594496.1
COORDINATES: similar to AA sequence:RefSeq:WP_009488251.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183441.1
COORDINATES: similar to AA sequence:RefSeq:WP_006184805.1
COORDINATES: similar to AA sequence:RefSeq:WP_008524593.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594491.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594490.1
COORDINATES: similar to AA sequence:RefSeq:WP_004517739.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183341.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053352.1
ArdC-like ssDNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008524579.1
COORDINATES: similar to AA sequence:RefSeq:WP_006184813.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004516403.1
COORDINATES: similar to AA sequence:RefSeq:WP_008446344.1
COORDINATES: similar to AA sequence:RefSeq:WP_006092954.1
COORDINATES: similar to AA sequence:RefSeq:WP_006092956.1
COORDINATES: similar to AA sequence:RefSeq:WP_007276461.1
orc1/cdc6 family replication initiation protein
COORDINATES: similar to AA sequence:RefSeq:WP_008458786.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006183521.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006183520.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183519.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183518.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183517.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053516.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183515.1
COORDINATES: similar to AA sequence:RefSeq:WP_014557033.1
COORDINATES: similar to AA sequence:RefSeq:WP_014557034.1
COORDINATES: similar to AA sequence:RefSeq:WP_008387649.1
COORDINATES: similar to AA sequence:RefSeq:WP_008458671.1
COORDINATES: similar to AA sequence:RefSeq:WP_008444080.1
COORDINATES: similar to AA sequence:RefSeq:WP_004967223.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611240.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015408486.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012996695.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004043318.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612288.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013757.2
COORDINATES: similar to AA sequence:RefSeq:WP_015408706.1
COORDINATES: similar to AA sequence:RefSeq:WP_008159038.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611983.1
COORDINATES: similar to AA sequence:RefSeq:WP_006092067.1
GO:0070403 - NAD+ binding [Evidence IEA]
GO:0006631 - fatty acid metabolic process [Evidence IEA]
3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006092094.1
COORDINATES: similar to AA sequence:RefSeq:WP_006092095.1
beta-ketoacyl synthase N-terminal-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015949835.1
COORDINATES: similar to AA sequence:RefSeq:WP_019992151.1
COORDINATES: protein motif:HMM:NF024844.2
COORDINATES: similar to AA sequence:RefSeq:WP_007143056.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011222305.1
COORDINATES: similar to AA sequence:RefSeq:WP_007188052.1
COORDINATES: similar to AA sequence:RefSeq:WP_014865890.1
phage integrase SAM-like domain-containing protein
COORDINATES: protein motif:HMM:NF024824.2
COORDINATES: similar to AA sequence:RefSeq:WP_008364405.1
GO:0009318 - exodeoxyribonuclease VII complex [Evidence IEA]
GO:0008855 - exodeoxyribonuclease VII activity [Evidence IEA]
GO:0006308 - DNA catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011222436.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594541.1
COORDINATES: similar to AA sequence:RefSeq:WP_004592043.1
COORDINATES: similar to AA sequence:RefSeq:WP_004592042.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222439.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594537.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594536.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594535.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594534.1
primase-like DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004517776.1
COORDINATES: similar to AA sequence:RefSeq:WP_010904184.1
COORDINATES: similar to AA sequence:RefSeq:WP_004517774.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222441.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594520.1
COORDINATES: similar to AA sequence:RefSeq:WP_011572759.1
COORDINATES: similar to AA sequence:RefSeq:WP_004517771.1
COORDINATES: similar to AA sequence:RefSeq:WP_004517770.1