Halosolutus gelatinilyticus strain SQT-29-1 plasmid unnamed3, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Natrialbales; Natrialbaceae; Halosolutus.
Diverse halophilic archaea isolated from saline environments
Submitted (11-APR-2022) School of Food and Biological Engineering, Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP095494.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Celera Assembler v. 2018/7/27\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 167.0x\nSequencing Technology :: Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 11/13/2022 10:51:41\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 4,586\nCDSs (total) :: 4,524\nGenes (coding) :: 4,428\nCDSs (with protein) :: 4,428\nGenes (RNA) :: 62\nrRNAs :: 4, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 3, 3 (5S, 16S, 23S)\ntRNAs :: 50\nncRNAs :: 2\nPseudo Genes (total) :: 96\nCDSs (without protein) :: 96\nPseudo Genes (ambiguous residues) :: 0 of 96\nPseudo Genes (frameshifted) :: 34 of 96\nPseudo Genes (incomplete) :: 74 of 96\nPseudo Genes (internal stop) :: 16 of 96\nPseudo Genes (multiple problems) :: 24 of 96\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Halosolutus gelatinilyticus
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_012946222.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007107559.1
COORDINATES: similar to AA sequence:RefSeq:WP_006674361.1
winged helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF012529.2
orc1/cdc6 family replication initiation protein
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_006430208.1
COORDINATES: similar to AA sequence:RefSeq:WP_015789205.1
GO:0004521 - endoribonuclease activity [Evidence IEA]
GO:0043571 - maintenance of CRISPR repeat elements [Evidence IEA]
COORDINATES: protein motif:HMM:NF021033.2
GO:0003674 - molecular_function [Evidence IEA]
type I-B CRISPR-associated protein Cas8b/Csh1
COORDINATES: similar to AA sequence:RefSeq:WP_005533725.1
type I-B CRISPR-associated protein Cas7/Csh2
COORDINATES: similar to AA sequence:RefSeq:WP_007143040.1
type I-B CRISPR-associated protein Cas5b
COORDINATES: protein motif:HMM:TIGR01596.1
COORDINATES: similar to AA sequence:RefSeq:WP_015789200.1
GO:0004518 - nuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007143037.1
GO:0004520 - endodeoxyribonuclease activity [Evidence IEA]
type I-B CRISPR-associated endonuclease Cas1b
COORDINATES: similar to AA sequence:RefSeq:WP_012660061.1
COORDINATES: similar to AA sequence:RefSeq:WP_008451652.1
COORDINATES: similar to AA sequence:RefSeq:WP_007703950.1
type IV pilin N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF037417.2
COORDINATES: protein motif:HMM:NF024753.2
PQQ-binding-like beta-propeller repeat protein
COORDINATES: similar to AA sequence:RefSeq:WP_013876081.1
GO:0008236 - serine-type peptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013876080.1
COORDINATES: similar to AA sequence:RefSeq:WP_007139931.1
COORDINATES: similar to AA sequence:RefSeq:WP_006111405.1
COORDINATES: protein motif:HMM:NF028516.2
COORDINATES: similar to AA sequence:RefSeq:WP_006169320.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: protein motif:HMM:NF021378.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF025873.2
helix-hairpin-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006107496.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004216322.1
COORDINATES: similar to AA sequence:RefSeq:WP_006430279.1
COORDINATES: similar to AA sequence:RefSeq:WP_008015508.1
COORDINATES: similar to AA sequence:RefSeq:WP_006431715.1
COORDINATES: similar to AA sequence:RefSeq:WP_015301261.1
GO:0009007 - site-specific DNA-methyltransferase (adenine-specific) activity [Evidence IEA]
GO:0032775 - DNA methylation on adenine [Evidence IEA]
COORDINATES: protein motif:HMM:NF024784.2
HNH endonuclease signature motif containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_020220693.1
COORDINATES: protein motif:HMM:NF024703.2
helicase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006429238.1
COORDINATES: protein motif:HMM:NF039183.1
COORDINATES: similar to AA sequence:RefSeq:WP_014863904.1
COORDINATES: protein motif:HMM:NF013964.2
COORDINATES: protein motif:HMM:NF025825.2
COORDINATES: similar to AA sequence:RefSeq:WP_004216270.1
COORDINATES: protein motif:HMM:NF016232.2