Halosolutus gelatinilyticus strain SQT-29-1 plasmid unnamed2, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Natrialbales; Natrialbaceae; Halosolutus.
Diverse halophilic archaea isolated from saline environments
Submitted (11-APR-2022) School of Food and Biological Engineering, Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP095493.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Celera Assembler v. 2018/7/27\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 167.0x\nSequencing Technology :: Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 11/13/2022 10:51:41\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 4,586\nCDSs (total) :: 4,524\nGenes (coding) :: 4,428\nCDSs (with protein) :: 4,428\nGenes (RNA) :: 62\nrRNAs :: 4, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 3, 3 (5S, 16S, 23S)\ntRNAs :: 50\nncRNAs :: 2\nPseudo Genes (total) :: 96\nCDSs (without protein) :: 96\nPseudo Genes (ambiguous residues) :: 0 of 96\nPseudo Genes (frameshifted) :: 34 of 96\nPseudo Genes (incomplete) :: 74 of 96\nPseudo Genes (internal stop) :: 16 of 96\nPseudo Genes (multiple problems) :: 24 of 96\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Halosolutus gelatinilyticus
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_006650367.1
GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
polysaccharide deacetylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006431438.1
COORDINATES: similar to AA sequence:RefSeq:WP_008453299.1
COORDINATES: similar to AA sequence:RefSeq:WP_006431435.1
COORDINATES: similar to AA sequence:RefSeq:WP_006109673.1
COORDINATES: similar to AA sequence:RefSeq:WP_005575953.1
COORDINATES: similar to AA sequence:RefSeq:WP_007261491.1
COORDINATES: similar to AA sequence:RefSeq:WP_006184432.1
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006184431.1
COORDINATES: similar to AA sequence:RefSeq:WP_006827920.1
COORDINATES: similar to AA sequence:RefSeq:WP_004214706.1
COORDINATES: similar to AA sequence:RefSeq:WP_008158979.1
COORDINATES: similar to AA sequence:RefSeq:WP_007261664.1
COORDINATES: similar to AA sequence:RefSeq:WP_007109218.1
COORDINATES: similar to AA sequence:RefSeq:WP_005576937.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007142911.1
COORDINATES: similar to AA sequence:RefSeq:WP_004214697.1
GO:0016779 - nucleotidyltransferase activity [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014863628.1
GO:0004360 - glutamine-fructose-6-phosphate transaminase (isomerizing) activity [Evidence IEA]
GO:0006040 - amino sugar metabolic process [Evidence IEA]; GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
glutamine--fructose-6-phosphate transaminase (isomerizing)
COORDINATES: similar to AA sequence:RefSeq:WP_007142907.1
COORDINATES: similar to AA sequence:RefSeq:WP_006067299.1
COORDINATES: similar to AA sequence:RefSeq:WP_013880590.1
bacterio-opsin activator domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006664180.1
COORDINATES: similar to AA sequence:RefSeq:WP_012946097.1
COORDINATES: similar to AA sequence:RefSeq:WP_006090963.1
COORDINATES: similar to AA sequence:RefSeq:WP_008425446.1
COORDINATES: similar to AA sequence:RefSeq:WP_008453330.1
COORDINATES: similar to AA sequence:RefSeq:WP_004063115.1
orc1/cdc6 family replication initiation protein
COORDINATES: similar to AA sequence:RefSeq:WP_007261518.1
COORDINATES: similar to AA sequence:RefSeq:WP_013880598.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895604.1
GO:0004805 - trehalose-phosphatase activity [Evidence IEA]
GO:0005992 - trehalose biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008895605.1
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006090979.1
peptidase M10A and M12B matrixin and adamalysin
COORDINATES: similar to AA sequence:RefSeq:WP_006091052.1
phage terminase large subunit family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004217266.1
GO:0004356 - glutamate-ammonia ligase activity [Evidence IEA]
GO:0006542 - glutamine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006067368.1
COORDINATES: similar to AA sequence:RefSeq:WP_008014231.1
COORDINATES: similar to AA sequence:RefSeq:WP_007140562.1
COORDINATES: similar to AA sequence:RefSeq:WP_006091047.1
COORDINATES: similar to AA sequence:RefSeq:WP_006179771.1
COORDINATES: similar to AA sequence:RefSeq:WP_006431234.1
COORDINATES: similar to AA sequence:RefSeq:WP_008416628.1
COORDINATES: similar to AA sequence:RefSeq:WP_014863661.1
2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate reductase
COORDINATES: similar to AA sequence:RefSeq:WP_020222471.1
GO:0033744 - L-methionine:thioredoxin-disulfide S-oxidoreductase activity [Evidence IEA]; GO:0008113 - peptide-methionine (S)-S-oxide reductase activity [Evidence IEA]
GO:0030091 - protein repair [Evidence IEA]; GO:0006979 - response to oxidative stress [Evidence IEA]
peptide-methionine (S)-S-oxide reductase MsrA
COORDINATES: similar to AA sequence:RefSeq:WP_006824734.1
GO:0005507 - copper ion binding [Evidence IEA]; GO:0009055 - electron transfer activity [Evidence IEA]
plastocyanin/azurin family copper-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_008895616.1
COORDINATES: similar to AA sequence:RefSeq:WP_007142686.1
cob(I)yrinic acid a,c-diamide adenosyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_006667355.1
nucleotidyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004217304.1
COORDINATES: similar to AA sequence:RefSeq:WP_006654454.1
COORDINATES: similar to AA sequence:RefSeq:WP_004214662.1
COORDINATES: similar to AA sequence:RefSeq:WP_006672820.1
GO:0003824 - catalytic activity [Evidence IEA]
GO:0009236 - cobalamin biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006431396.1
COORDINATES: similar to AA sequence:RefSeq:WP_007261525.1
COORDINATES: similar to AA sequence:RefSeq:WP_006431399.1
COORDINATES: similar to AA sequence:RefSeq:WP_015322405.1
GO:0004397 - histidine ammonia-lyase activity [Evidence IEA]
GO:0006548 - histidine catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006067256.1
COORDINATES: similar to AA sequence:RefSeq:WP_006179779.1
ribonuclease H-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006179780.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008425269.1
COORDINATES: similar to AA sequence:RefSeq:WP_006067245.1
COORDINATES: similar to AA sequence:RefSeq:WP_006654773.1
PGF-CTERM sorting domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015322519.1
COORDINATES: similar to AA sequence:RefSeq:WP_005558997.1
protein sorting system archaetidylserine decarboxylase
COORDINATES: similar to AA sequence:RefSeq:WP_007703517.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: protein motif:HMM:NF025030.2
COORDINATES: similar to AA sequence:RefSeq:WP_007189725.1
COORDINATES: similar to AA sequence:RefSeq:WP_015302030.1
COORDINATES: similar to AA sequence:RefSeq:WP_005558908.1
COORDINATES: protein motif:HMM:NF017652.2
GO:0016740 - transferase activity [Evidence IEA]
GO:0019475 - L-lysine catabolic process to acetate [Evidence IEA]
3-keto-5-aminohexanoate cleavage protein
COORDINATES: similar to AA sequence:RefSeq:WP_006649339.1
YihY/virulence factor BrkB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014053133.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_006663987.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006663988.1
COORDINATES: similar to AA sequence:RefSeq:WP_008159046.1
COORDINATES: similar to AA sequence:RefSeq:WP_006067339.1
COORDINATES: similar to AA sequence:RefSeq:WP_005559009.1
GO:0004765 - shikimate kinase activity [Evidence IEA]
GO:0009423 - chorismate biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005575937.1
COORDINATES: similar to AA sequence:RefSeq:WP_007981856.1
COORDINATES: similar to AA sequence:RefSeq:WP_006107178.1
COORDINATES: similar to AA sequence:RefSeq:WP_017342943.1
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
glycoside hydrolase family 3 C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007140827.1
COORDINATES: similar to AA sequence:RefSeq:WP_006185979.1
COORDINATES: similar to AA sequence:RefSeq:WP_006667584.1
trypsin-like peptidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008014126.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895451.1
heavy metal-associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019264826.1
COORDINATES: similar to AA sequence:RefSeq:WP_015321270.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015321271.1
COORDINATES: similar to AA sequence:RefSeq:WP_006078969.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006430588.1
COORDINATES: similar to AA sequence:RefSeq:WP_006666348.1
COORDINATES: similar to AA sequence:RefSeq:WP_015320495.1
COORDINATES: similar to AA sequence:RefSeq:WP_005559022.1
COORDINATES: similar to AA sequence:RefSeq:WP_008417053.1
COORDINATES: similar to AA sequence:RefSeq:WP_006179533.1
COORDINATES: similar to AA sequence:RefSeq:WP_007257592.1
COORDINATES: similar to AA sequence:RefSeq:WP_008012582.1
COORDINATES: similar to AA sequence:RefSeq:WP_004044564.1
GO:0003746 - translation elongation factor activity [Evidence IEA]
GO:0006414 - translational elongation [Evidence IEA]
translation elongation factor EF-1 subunit alpha
COORDINATES: protein motif:HMM:TIGR02928.1
COORDINATES: similar to AA sequence:RefSeq:WP_004063260.1
GO:0004371 - glycerone kinase activity [Evidence IEA]
GO:0006071 - glycerol metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006077541.1
COORDINATES: similar to AA sequence:RefSeq:WP_008423806.1
GO:0047324 - phosphoenolpyruvate-glycerone phosphotransferase activity [Evidence IEA]
dihydroxyacetone kinase phosphoryl donor subunit DhaM
COORDINATES: similar to AA sequence:RefSeq:WP_007273664.1
COORDINATES: similar to AA sequence:RefSeq:WP_006674191.1
COORDINATES: similar to AA sequence:RefSeq:WP_008419022.1
GO:0020037 - heme binding [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007109109.1
COORDINATES: similar to AA sequence:RefSeq:WP_006825326.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006107050.1
COORDINATES: similar to AA sequence:RefSeq:WP_013879778.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_009376032.1
COORDINATES: similar to AA sequence:RefSeq:WP_008440614.1
COORDINATES: similar to AA sequence:RefSeq:WP_004596607.1
COORDINATES: similar to AA sequence:RefSeq:WP_006824577.1
COORDINATES: similar to AA sequence:RefSeq:WP_006113509.1
COORDINATES: similar to AA sequence:RefSeq:WP_007109269.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895512.1
COORDINATES: similar to AA sequence:RefSeq:WP_008453204.1
proton-conducting transporter membrane subunit
COORDINATES: similar to AA sequence:RefSeq:WP_006663836.1
monovalent cation/H+ antiporter subunit D family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012946024.1
COORDINATES: similar to AA sequence:RefSeq:WP_013880527.1
COORDINATES: similar to AA sequence:RefSeq:WP_007109263.1
COORDINATES: similar to AA sequence:RefSeq:WP_008453217.1
GO:0005451 - monovalent cation:proton antiporter activity [Evidence IEA]
GO:0098662 - inorganic cation transmembrane transport [Evidence IEA]; GO:1902600 - proton transmembrane transport [Evidence IEA]
monovalent cation/H(+) antiporter subunit G
COORDINATES: similar to AA sequence:RefSeq:WP_008416605.1
COORDINATES: similar to AA sequence:RefSeq:WP_006650398.1
monovalent cation/H+ antiporter subunit E
COORDINATES: similar to AA sequence:RefSeq:WP_015319917.1
COORDINATES: similar to AA sequence:RefSeq:WP_006091079.1
COORDINATES: similar to AA sequence:RefSeq:WP_012946036.1
GO:0004152 - dihydroorotate dehydrogenase activity [Evidence IEA]
GO:0006222 - UMP biosynthetic process [Evidence IEA]
quinone-dependent dihydroorotate dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_006184471.1
COORDINATES: similar to AA sequence:RefSeq:WP_006184469.1
COORDINATES: similar to AA sequence:RefSeq:WP_013880538.1
GO:0004038 - allantoinase activity [Evidence IEA]; GO:0050897 - cobalt ion binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO:0000256 - allantoin catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007261580.1
NAD-dependent epimerase/dehydratase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013880540.1
COORDINATES: similar to AA sequence:RefSeq:WP_007142947.1
COORDINATES: similar to AA sequence:RefSeq:WP_008453245.1
COORDINATES: similar to AA sequence:RefSeq:WP_007109247.1
COORDINATES: similar to AA sequence:RefSeq:WP_005580746.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895651.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_005580743.1
COORDINATES: similar to AA sequence:RefSeq:WP_014863596.1
ClbS/DfsB family four-helix bundle protein
COORDINATES: similar to AA sequence:RefSeq:WP_006091062.1
COORDINATES: similar to AA sequence:RefSeq:WP_006179581.1
DegT/DnrJ/EryC1/StrS family aminotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_005580733.1
COORDINATES: similar to AA sequence:RefSeq:WP_013880553.1
GO:0051287 - NAD binding [Evidence IEA]; GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO:0003979 - UDP-glucose 6-dehydrogenase activity [Evidence IEA]
GO:0000271 - polysaccharide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005559080.1
COORDINATES: similar to AA sequence:RefSeq:WP_007109238.1
COORDINATES: similar to AA sequence:RefSeq:WP_006650362.1
COORDINATES: similar to AA sequence:RefSeq:WP_007140927.1
COORDINATES: similar to AA sequence:RefSeq:WP_006654816.1
COORDINATES: protein motif:HMM:NF013080.2
GO:0008484 - sulfuric ester hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF022072.2
COORDINATES: similar to AA sequence:RefSeq:WP_006666019.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_007997528.1
COORDINATES: similar to AA sequence:RefSeq:WP_007699534.1
COORDINATES: similar to AA sequence:RefSeq:WP_015788242.1
COORDINATES: protein motif:HMM:NF019325.2
COORDINATES: protein motif:HMM:NF019380.2
COORDINATES: similar to AA sequence:RefSeq:WP_006663843.1
COORDINATES: similar to AA sequence:RefSeq:WP_006067268.1
COORDINATES: similar to AA sequence:RefSeq:WP_006184449.1
COORDINATES: similar to AA sequence:RefSeq:WP_006067292.1
COORDINATES: similar to AA sequence:RefSeq:WP_006431444.1