Photorhabdus asymbiotica plasmid pPAU1, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Morganellaceae; Photorhabdus.
Comparative genomics of the emerging human pathogen Photorhabdus asymbiotica with the insect pathogen Photorhabdus luminescens
Submitted (21-MAY-2008) Crossman L.C., Pathogen Sequencing Unit, The Wellcome Trust Sanger Institute, Hinxton, Cambridge, Cambridgeshire, CB10 1SA, UNITED KINGDOM
REFSEQ INFORMATION: The reference sequence is identical to\nFM162592.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/24/2022 02:09:47\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,479\nCDSs (total) :: 4,359\nGenes (coding) :: 4,214\nCDSs (with protein) :: 4,214\nGenes (RNA) :: 120\nrRNAs :: 8, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 8, 7, 7 (5S, 16S, 23S)\ntRNAs :: 92\nncRNAs :: 6\nPseudo Genes (total) :: 145\nCDSs (without protein) :: 145\nPseudo Genes (ambiguous residues) :: 0 of 145\nPseudo Genes (frameshifted) :: 61 of 145\nPseudo Genes (incomplete) :: 99 of 145\nPseudo Genes (internal stop) :: 27 of 145\nPseudo Genes (multiple problems) :: 36 of 145\nCRISPR Arrays :: 4\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_007706040.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_003980690.1
COORDINATES: similar to AA sequence:RefSeq:WP_014598182.1
COORDINATES: protein motif:HMM:NF013211.2
GO:0019835 - cytolysis [Evidence IEA]; GO:0050829 - defense response to Gram-negative bacterium [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004110195.1
COORDINATES: similar to AA sequence:RefSeq:WP_011145229.1
COORDINATES: similar to AA sequence:RefSeq:WP_011145230.1
COORDINATES: similar to AA sequence:RefSeq:WP_000856758.1
COORDINATES: similar to AA sequence:RefSeq:WP_009484919.1
COORDINATES: similar to AA sequence:RefSeq:WP_013141641.1
COORDINATES: similar to AA sequence:RefSeq:WP_005306509.1
COORDINATES: similar to AA sequence:RefSeq:WP_016051627.1
COORDINATES: similar to AA sequence:RefSeq:WP_004109817.1
COORDINATES: similar to AA sequence:RefSeq:WP_006812508.1
GO:0005198 - structural molecule activity [Evidence IEA]
GO:0016032 - viral process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000442113.1
COORDINATES: protein motif:HMM:NF040129.1
COORDINATES: similar to AA sequence:RefSeq:WP_014962232.1
COORDINATES: similar to AA sequence:RefSeq:WP_016051620.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.