Photorhabdus asymbiotica plasmid pPAU1, complete sequence.
type: Entry
definition: Photorhabdus asymbiotica plasmid pPAU1, complete sequence.
sequence version: NC_012961.1
sequence date: 2022-12-24
sequence: sequence
division: CON
label: NC_012961.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMEA2272210
keyword: RefSeq
source: Photorhabdus asymbiotica
organism: Photorhabdus asymbiotica
taxonomy: Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Morganellaceae; Photorhabdus.
reference: 1
references: 19583835
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nFM162592.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/24/2022 02:09:47\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,479\nCDSs (total) :: 4,359\nGenes (coding) :: 4,214\nCDSs (with protein) :: 4,214\nGenes (RNA) :: 120\nrRNAs :: 8, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 8, 7, 7 (5S, 16S, 23S)\ntRNAs :: 92\nncRNAs :: 6\nPseudo Genes (total) :: 145\nCDSs (without protein) :: 145\nPseudo Genes (ambiguous residues) :: 0 of 145\nPseudo Genes (frameshifted) :: 61 of 145\nPseudo Genes (incomplete) :: 99 of 145\nPseudo Genes (internal stop) :: 27 of 145\nPseudo Genes (multiple problems) :: 36 of 145\nCRISPR Arrays :: 4\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 29330
topology: circular
so has quality: SO_0000988
location: 1..29330
location: region:1-29330:1
RO_0002162: 291112

NC_012961
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMEA2272210
type: BioSample
SIO_000068: biosample

1
title: Comparative genomics of the emerging human pathogen Photorhabdus asymbiotica with the insect pathogen Photorhabdus luminescens
author: Wilkinson, P.
author: Waterfield, N.R.
author: Crossman, L.
author: Corton, C.
author: Sanchez-Contreras, M.
author: Vlisidou, I.
author: Barron, A.
author: Bignell, A.
author: Clark, L.
author: Ormond, D.
author: Mayho, M.
author: Bason, N.
author: Smith, F.
author: Simmonds, M.
author: Churcher, C.
author: Harris, D.
author: Thompson, N.R.
author: Quail, M.
author: Parkhill, J.
author: Ffrench-Constant, R.H.
journal: BMC Genomics 10, 302 (2009)
pubmed: 19583835
comments: Publication Status: Online-Only

19583835
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Crossman, L.C.
journal: Submitted (21-MAY-2008) Crossman L.C., Pathogen Sequencing Unit, The Wellcome Trust Sanger Institute, Hinxton, Cambridge, Cambridgeshire, CB10 1SA, UNITED KINGDOM

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:29330:1
position: 29330
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-29330:1:source
so part of: sequence
organism: Photorhabdus asymbiotica
mol type: genomic DNA
isolate: ATCC43949
plasmid: pPAU1

291112
type: Taxonomy
SIO_000068: taxonomy

PAU_RS25195
type: Gene
subclass of: SO_0000704
RO_0002162: 291112
locus tag: PAU_RS25195
old locus tag: PAU_pPAU1_0001
so part of: sequence
location: 1..1065
location: region:1-1065:1
so has part: feature:1-1065:1:exon
subclass of: SO_0000010

position:1065:1
position: 1065
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-1065:1:exon

PAU_RS25195
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 291112
locus tag: PAU_RS25195
old locus tag: PAU_pPAU1_0001
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007706040.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIENFNENNDMSDMFWEVEKGTGEVINLVPNTSNTVQPVVLMRLGLFVPTLKSTKRGHQGEMSSMDATAELRQLAIVKTEGYENIHITGARLDMDNDFKTWVGIIHSFAKHKVIGDAVTLSFVDFIKLCGIPSSRSSKRLRERLGASLRRIATNTLSFSSQNKSYHTHLVQSAYYDMVKDTVTIQADPKIFELYQFDRKVLLQLRAINELGRKESAQALYTYIESLPPSPAPISLARLRARLNLRSRVTTQNAIVRKAMEQLKGIGYLDYTEIKRGSSVYFIVHARRPKLKALKSSKSSFKRKKETQEESILTELTREELELLEIIRAEKIIKVTRNHRRKKQTLLTFAEDESQ
SIO_010081: PAU_RS25195
subclass of: SO_0000673
so part of: PAU_RS25195
location: 1..1065
location: region:1-1065:1
so has part: feature:1-1065:1:exon

WP_012776169.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-1065:1:exon

PAU_RS21975
type: Gene
subclass of: SO_0000704
RO_0002162: 291112
locus tag: PAU_RS21975
so part of: sequence
location: complement(1782..2012)
location: region:1782-2012:-1
so has part: feature:1782-2012:-1:exon
subclass of: SO_0000010

position:1782:-1
position: 1782
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2012:-1
position: 2012
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1782-2012:-1:exon

PAU_RS21975
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 291112
locus tag: PAU_RS21975
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MQNDIILPINKLHGLKLLNSLELSDIELGELLSLEGDIKQVSTGNNGIVVHRIDMSEIGSFLIIDSGESRFVIKAS
SIO_010081: PAU_RS21975
subclass of: SO_0000673
so part of: PAU_RS21975
location: complement(1782..2012)
location: region:1782-2012:-1
so has part: feature:1782-2012:-1:exon

WP_041383148.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1782-2012:-1:exon

PAU_RS21980
type: Gene
subclass of: SO_0000704
RO_0002162: 291112
locus tag: PAU_RS21980
old locus tag: PAU_pPAU1_0002
so part of: sequence
location: 2284..2676
location: region:2284-2676:1
so has part: feature:2284-2676:1:exon
subclass of: SO_0000010

position:2284:1
position: 2284
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2676:1
position: 2676
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2284-2676:1:exon

PAU_RS21980
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 291112
locus tag: PAU_RS21980
old locus tag: PAU_pPAU1_0002
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003980690.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKGNKIGSFIEAAIIVSGKTQALIAKEVGYEKANNLSMIKSGKLLLPVDKVPAFAKALGIDEANLLTLVLEERYPSLLEIFKKHAEILTEDEAKVLKAYRKAKSEESLDPDNIRHADMSKFFQDLANKYI
SIO_010081: PAU_RS21980
subclass of: SO_0000673
so part of: PAU_RS21980
location: 2284..2676
location: region:2284-2676:1
so has part: feature:2284-2676:1:exon

WP_012776170.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2284-2676:1:exon

PAU_RS21985
type: Gene
subclass of: SO_0000704
RO_0002162: 291112
locus tag: PAU_RS21985
old locus tag: PAU_pPAU1_0003
so part of: sequence
location: complement(2686..3798)
location: region:2686-3798:-1
so has part: feature:2686-3798:-1:exon
subclass of: SO_0000010

position:2686:-1
position: 2686
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3798:-1
position: 3798
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2686-3798:-1:exon

PAU_RS21985
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 291112
locus tag: PAU_RS21985
old locus tag: PAU_pPAU1_0003
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014598182.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: site-specific integrase
translation: MQQQTKDEAYKASEHVGQHVIDYLNEISKQKLITLYRFDENDYVSQVIKLWIKLSLLLTRRRPEIAISSILTHLLPVVGEEKLINLNRLQLNRVFNNLLAEGKIHEAKRVFALTKQFLSWCESQGYIEHSPLTSMQRKDIGGKTPEPRSRSLSDAEIWVFWHGLDMWEVSAQVKWALRLCLVSARRPDEVIRANRSEFDFERGIWRQGKRNKSRRDHTLPLSPLMRLCVEKLEEANIWNSPWLCPSPKNPQNPLSKGSPAQVVRRMVRDVNKFGLKEFLPRDLRRTARTKLAALGVQNDVARKIMNHALEGIDRIYDKHDYFEQMKEGLNLLSSSIQGIISEDSYRGLKHNFEGEILELPNTSFLYCKIY
SIO_010081: PAU_RS21985
subclass of: SO_0000673
so part of: PAU_RS21985
location: complement(2686..3798)
location: region:2686-3798:-1
so has part: feature:2686-3798:-1:exon

WP_012776171.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2686-3798:-1:exon

PAU_RS21990
type: Gene
subclass of: SO_0000704
RO_0002162: 291112
locus tag: PAU_RS21990
old locus tag: PAU_pPAU1_0004
so part of: sequence
location: complement(4118..4675)
location: region:4118-4675:-1
so has part: feature:4118-4675:-1:exon
subclass of: SO_0000010

position:4118:-1
position: 4118
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4675:-1
position: 4675
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4118-4675:-1:exon

PAU_RS21990
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 291112
locus tag: PAU_RS21990
old locus tag: PAU_pPAU1_0004
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKVTNETKIYIPYSIVIASIVPIFIISLLFPSFPVTDFDIWLDNFIDNYLLGQIGLWSSLHPFSTKIIANYVNIFGPVFGLIISYLFIKKTTISINDLDKKNIYKNTFGIMIILLFDIGFVCINYFLSSDFMQHRGSFLLFGQYILFFTIPASIWFLSYAAIISLNFLIFSVFHFFHCKNHHQKQ
SIO_010081: PAU_RS21990
subclass of: SO_0000673
so part of: PAU_RS21990
location: complement(4118..4675)
location: region:4118-4675:-1
so has part: feature:4118-4675:-1:exon

WP_012776172.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4118-4675:-1:exon

PAU_RS21995
type: Gene
subclass of: SO_0000704
RO_0002162: 291112
locus tag: PAU_RS21995
old locus tag: PAU_pPAU1_0005
so part of: sequence
location: complement(4739..5995)
location: region:4739-5995:-1
so has part: feature:4739-5995:-1:exon
subclass of: SO_0000010

position:4739:-1
position: 4739
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5995:-1
position: 5995
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4739-5995:-1:exon

PAU_RS21995
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 291112
locus tag: PAU_RS21995
old locus tag: PAU_pPAU1_0005
inference: COORDINATES: protein motif:HMM:NF013211.2
GO component: GO:0016020 - membrane [Evidence IEA]
GO process: GO:0019835 - cytolysis [Evidence IEA]; GO:0050829 - defense response to Gram-negative bacterium [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: colicin-like pore-forming protein
translation: MSIYKLDTLVVTPHNSFFNKFRGNSGIDSGELSYIQAINAYCSPFLNGEKSECPVCGKINCPIFKKECDKLLNGQNNIDAKRNLMRGAYFGFPFLQIIEEYKKFENTYSNNLKANNIIPTVDVRKEMFKNYMDVAEICSRVPYQGRWSFINPARKGSELQFLPYSLTVALATLASDAGVDNIKNHSEMNEAMRKGDWDKAVKSFHAKMQYTETNVSVLNELIKEAERKKKSDEEINAIKNAVSYMSGVNKTIAEQYGDKVAKIAKEMQGEVKGKKIRNYQQALEVFEKTKNNLNKKVNAKDRAAIKKALETLDKHTLANNLKQMGKAFGIVGYSVQAINVYEKTKLGFETGNWSPLFLELESIAAGYGASALVGVALSMSGIAAPSVLFFALLGATASYYLSADNMGKINNFIVESIN
SIO_010081: PAU_RS21995
subclass of: SO_0000673
so part of: PAU_RS21995
location: complement(4739..5995)
location: region:4739-5995:-1
so has part: feature:4739-5995:-1:exon

WP_041383150.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4739-5995:-1:exon

PAU_RS22000
type: Gene
subclass of: SO_0000704
RO_0002162: 291112
locus tag: PAU_RS22000
old locus tag: PAU_pPAU1_0006
so part of: sequence
location: complement(6283..6636)
location: region:6283-6636:-1
so has part: feature:6283-6636:-1:exon
subclass of: SO_0000010

position:6283:-1
position: 6283
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6636:-1
position: 6636
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6283-6636:-1:exon

PAU_RS22000
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 291112
locus tag: PAU_RS22000
old locus tag: PAU_pPAU1_0006
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNKLSGLTKQDRITKEEFIKNAQQKTEVIKKRGRKSNSDNIIKSRTVSMEDEYHDLVELLRIVPRRANLSRSDVFRAALIYLSGQKFEDIKAALELSLETTPDNVKDLIKELDKKIP
SIO_010081: PAU_RS22000
subclass of: SO_0000673
so part of: PAU_RS22000
location: complement(6283..6636)
location: region:6283-6636:-1
so has part: feature:6283-6636:-1:exon

WP_012776174.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6283-6636:-1:exon

PAU_RS22005
type: Gene
subclass of: SO_0000704
RO_0002162: 291112
locus tag: PAU_RS22005
old locus tag: PAU_pPAU1_0007
so part of: sequence
location: complement(6633..7304)
location: region:6633-7304:-1
so has part: feature:6633-7304:-1:exon
subclass of: SO_0000010

position:6633:-1
position: 6633
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7304:-1
position: 7304
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6633-7304:-1:exon

PAU_RS22005
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 291112
locus tag: PAU_RS22005
old locus tag: PAU_pPAU1_0007
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004110195.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: AAA family ATPase
translation: MSESKIILVGGSKGGPGKSTIAQQIAAYLLLKGYTVHLLDIDEQATSYSWCEERATVNDLKPLAFGRASENIFERIQQLQHTFKYIVVDAGGFDSSAQREAMLIATHILYPLRPKRRDMRSLTNLDNVVEQIRELNEGVKVAALMNQCPTLPSQVQRIINAKFVCESFGIDPLRSIVHTRNIYDDAEEDGCSIFEIKGGRDKKAEKEIENVVEEFIFGREITE
SIO_010081: PAU_RS22005
subclass of: SO_0000673
so part of: PAU_RS22005
location: complement(6633..7304)
location: region:6633-7304:-1
so has part: feature:6633-7304:-1:exon

WP_012776175.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6633-7304:-1:exon

PAU_RS22010
type: Gene
subclass of: SO_0000704
RO_0002162: 291112
locus tag: PAU_RS22010
old locus tag: PAU_pPAU1_0008
so part of: sequence
location: 7537..7815
location: region:7537-7815:1
so has part: feature:7537-7815:1:exon
subclass of: SO_0000010

position:7537:1
position: 7537
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7815:1
position: 7815
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7537-7815:1:exon

PAU_RS22010
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 291112
locus tag: PAU_RS22010
old locus tag: PAU_pPAU1_0008
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011145229.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF1778 domain-containing protein
translation: MNVTIDSRKNRTLNLRIRQEDRDLIDRAAKVKGKTVTEYVLDTIKRDAENTLLEHSFMVVSPEIFDAFISKLDAPVTQNERLIKTANMTKPW
SIO_010081: PAU_RS22010
subclass of: SO_0000673
so part of: PAU_RS22010
location: 7537..7815
location: region:7537-7815:1
so has part: feature:7537-7815:1:exon

WP_012776176.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7537-7815:1:exon

PAU_RS22015
type: Gene
subclass of: SO_0000704
RO_0002162: 291112
locus tag: PAU_RS22015
old locus tag: PAU_pPAU1_0010
so part of: sequence
location: 7820..8320
location: region:7820-8320:1
so has part: feature:7820-8320:1:exon
subclass of: SO_0000010

position:7820:1
position: 7820
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8320:1
position: 8320
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7820-8320:1:exon

PAU_RS22015
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 291112
locus tag: PAU_RS22015
old locus tag: PAU_pPAU1_0010
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011145230.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: GNAT family N-acetyltransferase
translation: MINDPTLLTDDHNLDNFNSGVDTLDNWLIDRALKNQKENASRTYVVSENKDVIAYYSLATGSIMSEEAISKFKRNMPNPIPVIILARLAVDKNYQGKGFGRYLVRDASIRVAQAADLVGVRGLIVHAISEDAKEFYKSVGFNDSPLNPMTLMITLKDLKATFNITD
SIO_010081: PAU_RS22015
subclass of: SO_0000673
so part of: PAU_RS22015
location: 7820..8320
location: region:7820-8320:1
so has part: feature:7820-8320:1:exon

WP_012776177.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7820-8320:1:exon

PAU_RS24140
type: Gene
subclass of: SO_0000704
RO_0002162: 291112
locus tag: PAU_RS24140
so part of: sequence
location: complement(8474..8725)
location: region:8474-8725:-1
so has part: feature:8474-8725:-1:exon
subclass of: SO_0000010

position:8474:-1
position: 8474
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8725:-1
position: 8725
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8474-8725:-1:exon

PAU_RS24140
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 291112
locus tag: PAU_RS24140
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MMSLLLNKVKYALLMVIAVVSTLLTAYGLGSRSARKAYELKHAQDDRDRLYKTVVVKNEVKDDINKMSPGVAHNELNDHWMRQ
SIO_010081: PAU_RS24140
subclass of: SO_0000673
so part of: PAU_RS24140
location: complement(8474..8725)
location: region:8474-8725:-1
so has part: feature:8474-8725:-1:exon

WP_049795271.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8474-8725:-1:exon

PAU_RS22025
type: Gene
subclass of: SO_0000704
RO_0002162: 291112
locus tag: PAU_RS22025
old locus tag: PAU_pPAU1_0011
so part of: sequence
location: complement(8763..9422)
location: region:8763-9422:-1
so has part: feature:8763-9422:-1:exon
subclass of: SO_0000010

position:8763:-1
position: 8763
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9422:-1
position: 9422
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8763-9422:-1:exon

PAU_RS22025
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 291112
locus tag: PAU_RS22025
old locus tag: PAU_pPAU1_0011
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAEHGFQLRGEHGFLQIDGRYQNMDLTVKKTFGAPGGYSTKDSYSERGRLTKWNEILSPSTSIIAIDSNDWVVSIDEGVYQAAGANRANVTIYGFGTDKKHWFKSTHGLSVLNDKGQEVYNSNWAALRVVDVFNLGHIKKWAYEIPPGKQYAMVMSGGRLEYVMAQDRAIEFVYFMRKIGNRFEVEYRESMWWFRDEDENSYVAQDFPLSILILDVTGY
SIO_010081: PAU_RS22025
subclass of: SO_0000673
so part of: PAU_RS22025
location: complement(8763..9422)
location: region:8763-9422:-1
so has part: feature:8763-9422:-1:exon

WP_012776178.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8763-9422:-1:exon

PAU_RS22030
type: Gene
subclass of: SO_0000704
RO_0002162: 291112
locus tag: PAU_RS22030
old locus tag: PAU_pPAU1_0012
so part of: sequence
location: complement(9422..9742)
location: region:9422-9742:-1
so has part: feature:9422-9742:-1:exon
subclass of: SO_0000010

position:9742:-1
position: 9742
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9422-9742:-1:exon

PAU_RS22030
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 291112
locus tag: PAU_RS22030
old locus tag: PAU_pPAU1_0012
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAVSGVRIQDSQGKPLIEVNDRMGRIVGYHEIPVRHNLRFKKTFSHPELAGMGEIFVWSNVAAILWQQEGKGSITVSGTNIIVEIYVDGSHHFPAFGYVRVFYGVR
SIO_010081: PAU_RS22030
subclass of: SO_0000673
so part of: PAU_RS22030
location: complement(9422..9742)
location: region:9422-9742:-1
so has part: feature:9422-9742:-1:exon

WP_012776179.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9422-9742:-1:exon

PAU_RS22035
type: Gene
subclass of: SO_0000704
RO_0002162: 291112
locus tag: PAU_RS22035
old locus tag: PAU_pPAU1_0013
so part of: sequence
location: complement(9778..10467)
location: region:9778-10467:-1
so has part: feature:9778-10467:-1:exon
subclass of: SO_0000010

position:9778:-1
position: 9778
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10467:-1
position: 10467
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9778-10467:-1:exon

PAU_RS22035
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 291112
locus tag: PAU_RS22035
old locus tag: PAU_pPAU1_0013
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000856758.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: membrane protein
translation: MATPRGIRNNNPGNIERGSPWQGLTDKPKDSRFCTFKDPVFGIRAIAVTLITYHDKRKAKDGSRIDTVREVIERWAPKVENHTDNYVHFVARAIGVQPDSEMDLHQYHIIRPLVEAIIAQENGKGPLRNLNTWYSNEIIDEGLRRAGVVKPVKEVTKIPVTKETASATVAASLGIGQLAEVLPQISAAMDKAEGHLSSSSVVRIIFGIATIVVACVIAYSQIKRHQQGL
SIO_010081: PAU_RS22035
subclass of: SO_0000673
so part of: PAU_RS22035
location: complement(9778..10467)
location: region:9778-10467:-1
so has part: feature:9778-10467:-1:exon

WP_012776180.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9778-10467:-1:exon

PAU_RS22040
type: Gene
subclass of: SO_0000704
RO_0002162: 291112
locus tag: PAU_RS22040
old locus tag: PAU_pPAU1_0014
so part of: sequence
location: complement(10550..11206)
location: region:10550-11206:-1
so has part: feature:10550-11206:-1:exon
subclass of: SO_0000010

position:10550:-1
position: 10550
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11206:-1
position: 11206
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10550-11206:-1:exon

PAU_RS22040
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 291112
locus tag: PAU_RS22040
old locus tag: PAU_pPAU1_0014
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MVNHGFQLTGDHGIFQIDGTHQNICLADVFSVQGTGGVVYDSADVDSGRITKLPLISANTSTIIAIDCDNWAQISADSMIQPIHAAKVNAKIYAFSDKPNNWYKSNMGLSIRNDQNIEVYNSNWAIMKIVDVFNIGYVESWSYKIPAGKKYAFVVLSGNIEVSIHNHDGEVRNHFYRRVGNLFEINFMAYSKFISYASRMHHVIKTPISIIVIDVADL
SIO_010081: PAU_RS22040
subclass of: SO_0000673
so part of: PAU_RS22040
location: complement(10550..11206)
location: region:10550-11206:-1
so has part: feature:10550-11206:-1:exon

WP_012776181.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10550-11206:-1:exon

PAU_RS22045
type: Gene
subclass of: SO_0000704
RO_0002162: 291112
locus tag: PAU_RS22045
old locus tag: PAU_pPAU1_0016
so part of: sequence
location: complement(11206..11517)
location: region:11206-11517:-1
so has part: feature:11206-11517:-1:exon
subclass of: SO_0000010

position:11517:-1
position: 11517
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11206-11517:-1:exon

PAU_RS22045
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 291112
locus tag: PAU_RS22045
old locus tag: PAU_pPAU1_0016
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MANSGLVINNSKGKPTISITDRVGRYVGKHVIDSAKVNSRFKHTFSHPELEPYGELFYWINPNFFWSEASYASITISGSNIHADIFIPDMISQEPFIIYYGVR
SIO_010081: PAU_RS22045
subclass of: SO_0000673
so part of: PAU_RS22045
location: complement(11206..11517)
location: region:11206-11517:-1
so has part: feature:11206-11517:-1:exon

WP_012776182.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11206-11517:-1:exon

PAU_RS22050
type: Gene
subclass of: SO_0000704
RO_0002162: 291112
locus tag: PAU_RS22050
old locus tag: PAU_pPAU1_0017
so part of: sequence
location: complement(11588..11914)
location: region:11588-11914:-1
so has part: feature:11588-11914:-1:exon
subclass of: SO_0000010

position:11588:-1
position: 11588
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11914:-1
position: 11914
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11588-11914:-1:exon

PAU_RS22050
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 291112
locus tag: PAU_RS22050
old locus tag: PAU_pPAU1_0017
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009484919.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSNEVGNVTPEMVEHIAKIVAREVVTNLKGDLTDKIGAEVANQLKNYFGDMTAAQHSIQHANLEKLLTRLESISSGFFDGIISKITSILTVALILGLAAWGMKNGFGN
SIO_010081: PAU_RS22050
subclass of: SO_0000673
so part of: PAU_RS22050
location: complement(11588..11914)
location: region:11588-11914:-1
so has part: feature:11588-11914:-1:exon

WP_012776183.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11588-11914:-1:exon

PAU_RS22055
type: Gene
subclass of: SO_0000704
RO_0002162: 291112
locus tag: PAU_RS22055
old locus tag: PAU_pPAU1_0018
so part of: sequence
location: complement(12107..12718)
location: region:12107-12718:-1
so has part: feature:12107-12718:-1:exon
subclass of: SO_0000010

position:12107:-1
position: 12107
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12718:-1
position: 12718
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12107-12718:-1:exon

PAU_RS22055
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 291112
locus tag: PAU_RS22055
old locus tag: PAU_pPAU1_0018
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013141641.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MRIGYTRVSKSDGSQVQDLQLDALLAAGVNKENIYQDEISEKSDKRPGLDACLKALRPGDVLMVWKLDRLGRSLKHLVNTIHDLADRKIGFKVLTGQGAEIDTTTASGKLVFGIFAALAEFERELISERTKVGLAAARARGREGGRSFKLTKSQVRLAQVSMKSRGCSVSELCEELGISRQALYKYVGPDGELREHGKRVLKS
SIO_010081: PAU_RS22055
subclass of: SO_0000673
so part of: PAU_RS22055
location: complement(12107..12718)
location: region:12107-12718:-1
so has part: feature:12107-12718:-1:exon

WP_012776184.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12107-12718:-1:exon

PAU_RS22060
type: Gene
subclass of: SO_0000704
RO_0002162: 291112
locus tag: PAU_RS22060
old locus tag: PAU_pPAU1_0019
so part of: sequence
location: complement(12726..13556)
location: region:12726-13556:-1
so has part: feature:12726-13556:-1:exon
subclass of: SO_0000010

position:12726:-1
position: 12726
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13556:-1
position: 13556
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12726-13556:-1:exon

PAU_RS22060
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 291112
locus tag: PAU_RS22060
old locus tag: PAU_pPAU1_0019
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005306509.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: KilA-N domain-containing protein
translation: MAQKIDVRGIKVSVFSDKQDDYISLSDIAKYKDGDRGDYILQNWMRNRSTIEFIGLWEQLHNPDFNSIEFDGFKHEAGANSFSLTPKRWITTTNAIGFISKAGRYGGTYAHRDIAFEFASWISAEFKLYLLKEFQRLKQAENEQKNLEWNVSRTLAKVNYHIHTESIKTNIIPALEINPKARNFAYANEADILNLALFGKTASDWRKENPELKGNIRDYATLEQLVVLSNLESFNAELIGQGLSANDRFQKLNRVAVSQMEILIENKSIEKLKQLK
SIO_010081: PAU_RS22060
subclass of: SO_0000673
so part of: PAU_RS22060
location: complement(12726..13556)
location: region:12726-13556:-1
so has part: feature:12726-13556:-1:exon

WP_012776185.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12726-13556:-1:exon

PAU_RS25955
type: Gene
subclass of: SO_0000704
RO_0002162: 291112
locus tag: PAU_RS25955
so part of: sequence
location: complement(13892..14023)
location: region:13892-14023:-1
so has part: feature:13892-14023:-1:exon
subclass of: SO_0000010

position:13892:-1
position: 13892
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14023:-1
position: 14023
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13892-14023:-1:exon

PAU_RS25955
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 291112
locus tag: PAU_RS25955
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MWYREGTASFKQGHRIVTGENTRWNQTKYGVLPGRLFFVLVTT
SIO_010081: PAU_RS25955
subclass of: SO_0000673
so part of: PAU_RS25955
location: complement(13892..14023)
location: region:13892-14023:-1
so has part: feature:13892-14023:-1:exon

WP_269450482.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13892-14023:-1:exon

PAU_RS22065
type: Gene
subclass of: SO_0000704
RO_0002162: 291112
locus tag: PAU_RS22065
old locus tag: PAU_pPAU1_0020
so part of: sequence
location: complement(14085..18320)
location: region:14085-18320:-1
so has part: feature:14085-18320:-1:exon
subclass of: SO_0000010

position:14085:-1
position: 14085
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18320:-1
position: 18320
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14085-18320:-1:exon

PAU_RS22065
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 291112
locus tag: PAU_RS22065
old locus tag: PAU_pPAU1_0020
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016051627.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: phage tail protein
translation: MKTKEKRLLAGAGGKKGGGSARTPVEAPDNVQSRSLASILDLLGEGKIGGLVDGGKSIFLDNVPLLNPDGTSNFNGITWWFRDGSQNQSVIEGFDAIETPKDVGVRIKTTSPRTIQIDNDDADQVRIIMMFPKLANTDRKTGDTYGATVEFQFSLAVGDKGFEPITPVGYKSPVINVSKKSSGKHYREYLFDLPKPGTNYRIRVDRLTPDSKTDYVNDQTWMSSYGEIVNSKLAYPNSALVGIRIDSQQFGSSMPSRSYLVKGLEIRVPSNYRPDTNTYHGDWDGTFSPQVSDNPAWILYDILTSKRYGLGQYIQESMINIAQLYQIGRYCDQEVSDGFGGLEKRFSINTVINSRGEAYRVLQDITSVFRGMIFWAGGMVNIMQDSPSTPIMQFTSANIIGKVSYKGTSRKDRSTVAMITYNDKDDLYKQNIEYVEDREGIKRFGIRKTESVAFGCTSRGQAHRVGLWTLYSNRMETDLITFKTGLDASLLMPGELVKLQDKFRSGKRNSGRVKSFTANSITLDAPVKLEQAGNSISFLNAKGKMIDRNLIEGTGEHTTVTFKQPISEEETPVPLGIWTITEPNLEPMIVRILSVNQGEEKGSFDIVGVQHNPTKFTAIDQGAKLTPSKITALDPTFSKPENLMITEGTYLSSPGNLSVKLTVSWEGKSPSYILRWRRSDVVEGWKTIEVTEEQYDILSVAENGEYDIEVYAISMTGRRTATITTTYKTLGTMTPPNSPSALTAIGDYRQIILNWLNPDSIDLDKVNVYASKINDLSSSALIAEVASSTFTHSGINDDETWYYWVRAVNKRGMLSNPNSNLGTEATTKNVLSFLKNQITKSELGQELLSDIDGKATNEAVDSIKESIDESVKKLDESVTGISDSFADMEEAQKKLKETVDGTQSKIDKALGDVNDSVAKVTTLRETVEKQSESIAGTLSAVNAAVSSNKAQIAAEQEARVMADEALSKRVDSMKSIVDEGQSSIQKMQQTVSDVEKSTAGVTSNIEAIAKANIDLALRQHEDVKKQSVTNAKIQSEQQTIADSVSAVSKKVDLIKAEIGDNIVAQLAEEKEARASADETLSKRVSKLSAEMDDNIKASIIEESKARATADEALSKQITALKSEVDTNIKSAIKTESETRTTQDVALASQISSLNAEMTNNKAAINTETQARANEDQALSKRIDSLTAEMNNNVKAAINSEAKTRADADTAVSNTVKALEAKVNDVAASVTTESQARASADNALGKRIDSVNAKTDQMSATVQQTSKAVADVNGKLSASWTLKMETSGKNNVKYAAGMSLGIDGGTSQFLVRADRFGLVNSVDGKITTPFVVNNGVTYMNGAYIQDGTITNAKVGDLQSNNYAAGKTGWRISKGGGFEINGNTSGAGRMVISNNRIDVYDERGVLRVRLGLL
SIO_010081: PAU_RS22065
subclass of: SO_0000673
so part of: PAU_RS22065
location: complement(14085..18320)
location: region:14085-18320:-1
so has part: feature:14085-18320:-1:exon

WP_231849255.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14085-18320:-1:exon

PAU_RS22070
type: Gene
subclass of: SO_0000704
RO_0002162: 291112
locus tag: PAU_RS22070
old locus tag: PAU_pPAU1_0021
so part of: sequence
location: complement(18403..19032)
location: region:18403-19032:-1
so has part: feature:18403-19032:-1:exon
subclass of: SO_0000010

position:18403:-1
position: 18403
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19032:-1
position: 19032
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18403-19032:-1:exon

PAU_RS22070
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 291112
locus tag: PAU_RS22070
old locus tag: PAU_pPAU1_0021
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: tail assembly protein
translation: MSDTDKEKAHLVTVELGGVLGKHFGKIHRIATDTARMAINIIDCNRPGLLSWMKVNAKKYQKYHIRIEREDGQTYDLSNEEYLLESNGRLKSIRITPIYRGAGPKVLGAVQVVVGVILMTVALVSAEVTGGASLAMFSAGFSMVFGGITALLSKQPTNKMSSVDHKDSYYFDGPQNTVSQGNPVPLIFGKEVLVGSQIISVKMSVDQMM
SIO_010081: PAU_RS22070
subclass of: SO_0000673
so part of: PAU_RS22070
location: complement(18403..19032)
location: region:18403-19032:-1
so has part: feature:18403-19032:-1:exon

WP_012776187.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18403-19032:-1:exon

PAU_RS22075
type: Gene
subclass of: SO_0000704
RO_0002162: 291112
locus tag: PAU_RS22075
old locus tag: PAU_pPAU1_0022
so part of: sequence
location: complement(19025..19819)
location: region:19025-19819:-1
so has part: feature:19025-19819:-1:exon
subclass of: SO_0000010

position:19025:-1
position: 19025
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19819:-1
position: 19819
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19025-19819:-1:exon

PAU_RS22075
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 291112
locus tag: PAU_RS22075
old locus tag: PAU_pPAU1_0022
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004109817.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: C40 family peptidase
translation: MITKDMIGEKLLNDMRQAALHAYPNEACGLLVNTCANKYELILCRNVSDEPENFFVMDADDQVAAEQMGQVVAVWHSHTDGDNQASEADLAGCEASEIPWFIINISKNYNPEIEAEFRFSDINVIEPSGFEMPYEGRPYAFGVFDCWLLCRDYLKREFGIEMGVCLDLHIPSWWDKGMNILHENYESQGLVRLPVGTPPQRGDIFFMQMGSKMSDHCAVYIGDGMILHHQIDRLSTKAIYGGMYEKHTTHHLRHKNLMEGISNE
SIO_010081: PAU_RS22075
subclass of: SO_0000673
so part of: PAU_RS22075
location: complement(19025..19819)
location: region:19025-19819:-1
so has part: feature:19025-19819:-1:exon

WP_012776188.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19025-19819:-1:exon

PAU_RS22080
type: Gene
subclass of: SO_0000704
RO_0002162: 291112
locus tag: PAU_RS22080
old locus tag: PAU_pPAU1_0023
so part of: sequence
location: complement(19816..20514)
location: region:19816-20514:-1
so has part: feature:19816-20514:-1:exon
subclass of: SO_0000010

position:19816:-1
position: 19816
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20514:-1
position: 20514
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19816-20514:-1:exon

PAU_RS22080
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 291112
locus tag: PAU_RS22080
old locus tag: PAU_pPAU1_0023
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006812508.1
GO function: GO:0005198 - structural molecule activity [Evidence IEA]
GO process: GO:0016032 - viral process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: phage minor tail protein L
translation: METITSGIQALSPSALIELFELDLSVTKSGGKLLFHAGTNELSEPIIWQGKTYNPWPIAASGFDKNGQGKLPRPKMQISNFDGIISAEIQANEDLIGCKIIRKLTLARFLDATNFKDGNPMADPNQHFADEIWFIDQKTFEDRDIVEFELASAFDLMGVQLPNRQIIKNSCQWQYRSAECGYTGPYFDKDDNLTTTPSADFCTKRLSSCRARRNYFADGIIAFGGFPGANRA
SIO_010081: PAU_RS22080
subclass of: SO_0000673
so part of: PAU_RS22080
location: complement(19816..20514)
location: region:19816-20514:-1
so has part: feature:19816-20514:-1:exon

WP_012776189.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19816-20514:-1:exon

PAU_RS22085
type: Gene
subclass of: SO_0000704
RO_0002162: 291112
locus tag: PAU_RS22085
old locus tag: PAU_pPAU1_0024
so part of: sequence
location: complement(20560..20892)
location: region:20560-20892:-1
so has part: feature:20560-20892:-1:exon
subclass of: SO_0000010

position:20560:-1
position: 20560
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20892:-1
position: 20892
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20560-20892:-1:exon

PAU_RS22085
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 291112
locus tag: PAU_RS22085
old locus tag: PAU_pPAU1_0024
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000442113.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: phage tail protein
translation: MSRKAFTWHPKFDSQKEMTPSVTMLSFGEGYEQRVTTGLNWRRQSWSLEFEGSWNEVRQIEDFLYDRGGIESFNWTSPEKDNFVVVCDKYQVKRGRGVSTLTATFRQVFE
SIO_010081: PAU_RS22085
subclass of: SO_0000673
so part of: PAU_RS22085
location: complement(20560..20892)
location: region:20560-20892:-1
so has part: feature:20560-20892:-1:exon

WP_012776190.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20560-20892:-1:exon

PAU_RS22090
type: Gene
subclass of: SO_0000704
RO_0002162: 291112
locus tag: PAU_RS22090
old locus tag: PAU_pPAU1_0025
so part of: sequence
location: complement(20902..25470)
location: region:20902-25470:-1
so has part: feature:20902-25470:-1:exon
subclass of: SO_0000010

position:20902:-1
position: 20902
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:25470:-1
position: 25470
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20902-25470:-1:exon

PAU_RS22090
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 291112
locus tag: PAU_RS22090
old locus tag: PAU_pPAU1_0025
inference: COORDINATES: protein motif:HMM:NF040129.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tape measure protein
translation: MSENMEFKLSLDNKSFTASINSAGKLLKAFGDGAKTSAKSIAVSERAMNSLSRTFRVLNKQLLDGEKIAKDMAAGFQLMAERGKNAQVQVVGLNANLKTLQTRLEGVERTLDKTTSAMSVFVNQSHLASLAAKNIGLNAKQSSDGFSSLNTHLSRTNHMLQSWKGSTSTAVGGLKAINNQLREIANREAQITRTPFRVSTSPVSGGNRKSGGNDSGGRSINSSGEHNSSTFNGLVGKVSGTAQTAKDIFISWQQPIIEAAAQMQKIQILLERINKSAADPKAAARQDMDYIVNMAKTAPFSMGALTDAFVRFKSVGLDPTDGSMKSLIDSVVRFGGDSALLKRSATAIQQMSANGVISMEGLRQQLGEAVPTAMQAMANASGVTLAELTKQISTGTVEAESALKLLFIGLEAQNKGAANDLMVTYTSALTQLQTSFTLFADNIGKSGSLESMTNVFRDLTNYMNSVDGQKMAMNIGENLSSAIESLRTMAKFVGDNIGLFKTLAEIIVAGLGFSLLKKGILSTAGAAMDMGRAVKNGFSVINSAGVAAVSTVGRISKLISEFGAKATLIIGVGEAIKMVRAAWLSFTAVIIANPVGAAIAAIGVAIAGLISIMTMLRDKTEETVTEIRKIPAAMTAAQRAQVKGKINSLNGNIAEDERILRAMGDRDSYVENYGLGARVHNRKAVEERIAANKTQRDIYTETIGMGDKAVYEQLAADVIKNRLDKIDVGIAAGLAQYDNTTAKKAAAERVVLSNSKLSPLEKEKEIARINDNDRAENLKPYTAAINATTKHVDSLAAEVTKLTEQLKDPKLNTDERSRKQGQLDGQAKAYVIAKNKLEELQSTANNISQSRFGTPFTTGKKSTGFGMDPKLDEKMNKLYLSSLTDSGVKPRINASGKVMTDLTGDMITGDNQLKVDQEIREIYSGVTRLDQLTAEQQKQVSETLANAKIKDAERAADAAVSASNKETAAIRKTGAEQLELVEGYRKALDKGAQLTRQMGFSTEATATFDQQINDVTQSLTKLANATPTSLITPEMIEQANTQLSFIQNNAKELRDRFNRDAVNQNIQKFAPFTENVISAGYTPSREEKGREFNENFNRSLSYLQGEANKTQDEDMAKLYEQKITQMLAARNKAFIQSAGTASQNLAVQYADVASQVEKAWAGTFESLTDHLVDFVKTGKFNMTSFADYITNQMLQIAVKSMVVEPLMGALGMGANPNGQGPGPLSNLMNGFMEGTTGANVSNQSLMETVPGAPQDDSLGGVKAPVKSLTSSMMDLASSGVDRLKAGFAALTSSFDFSSMAAEKNATTTNEATKSTWMFSNTATAAITAVGATIASLGAATGNKWMGYLGAAVSVVGMASSAYSAMSSAGWLSSGGGNAVADGTKGIQLRPTPDQFQVITPHANGGVFGPGGVVSLAKYSKGGIATSPQLALFGEGDMNEAYVPLPDGRTIPVTMTGNVSGSGGDQVNIAITVQNYNDGSSNSSEDGDNGSQWNEMARKVKAVVLDTLTSESRPGGMLNNTAR
SIO_010081: PAU_RS22090
subclass of: SO_0000673
so part of: PAU_RS22090
location: complement(20902..25470)
location: region:20902-25470:-1
so has part: feature:20902-25470:-1:exon

WP_012776191.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20902-25470:-1:exon

PAU_RS22095
type: Gene
subclass of: SO_0000704
RO_0002162: 291112
locus tag: PAU_RS22095
old locus tag: PAU_pPAU1_0026
so part of: sequence
location: complement(25477..25644)
location: region:25477-25644:-1
so has part: feature:25477-25644:-1:exon
subclass of: SO_0000010

position:25477:-1
position: 25477
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:25644:-1
position: 25644
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25477-25644:-1:exon

PAU_RS22095
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 291112
locus tag: PAU_RS22095
old locus tag: PAU_pPAU1_0026
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MARIAQADADSSKAFVEGLQHRLGKPVVTSAVYDPSFAKADPNAKEQLMKIFGGG
SIO_010081: PAU_RS22095
subclass of: SO_0000673
so part of: PAU_RS22095
location: complement(25477..25644)
location: region:25477-25644:-1
so has part: feature:25477-25644:-1:exon

WP_231849254.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25477-25644:-1:exon

PAU_RS22100
type: Gene
subclass of: SO_0000704
RO_0002162: 291112
locus tag: PAU_RS22100
old locus tag: PAU_pPAU1_0027
so part of: sequence
location: complement(25827..26144)
location: region:25827-26144:-1
so has part: feature:25827-26144:-1:exon
subclass of: SO_0000010

position:25827:-1
position: 25827
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:26144:-1
position: 26144
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25827-26144:-1:exon

PAU_RS22100
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 291112
locus tag: PAU_RS22100
old locus tag: PAU_pPAU1_0027
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014962232.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTKLLDLDAILPPVKSVKFGGKEFPIVNMTVGLFVRIKQMEGQDLTTKSPAEQVVMYAEMVKQLLPSIDDEILGRMTVEQLQQIFNFAMAQVEEENEAAAGEEAK
SIO_010081: PAU_RS22100
subclass of: SO_0000673
so part of: PAU_RS22100
location: complement(25827..26144)
location: region:25827-26144:-1
so has part: feature:25827-26144:-1:exon

WP_041383155.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25827-26144:-1:exon

PAU_RS22105
type: Gene
subclass of: SO_0000704
RO_0002162: 291112
locus tag: PAU_RS22105
old locus tag: PAU_pPAU1_0028
pseudo: true
so part of: sequence
location: complement(<26274..26765)
location: region:26274-26765:-1
so has part: feature:26274-26765:-1:exon
subclass of: SO_0000010

position:26274:-1
position: 26274
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:26765:-1
position: 26765
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26274-26765:-1:exon

PAU_RS22105
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 291112
locus tag: PAU_RS22105
old locus tag: PAU_pPAU1_0028
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016051620.1
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: hypothetical protein
SIO_010081: PAU_RS22105
subclass of: SO_0000673
so part of: PAU_RS22105
location: complement(<26274..26765)
location: region:26274-26765:-1
so has part: feature:26274-26765:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:26274-26765:-1:exon

PAU_RS22110
type: Gene
subclass of: SO_0000704
RO_0002162: 291112
locus tag: PAU_RS22110
old locus tag: PAU_pPAU1_0029
so part of: sequence
location: 27139..27417
location: region:27139-27417:1
so has part: feature:27139-27417:1:exon
subclass of: SO_0000010

position:27139:1
position: 27139
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27417:1
position: 27417
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:27139-27417:1:exon

PAU_RS22110
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 291112
locus tag: PAU_RS22110
old locus tag: PAU_pPAU1_0029
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNSKVVQFRVSEKAHKRLADCRVRLRSHTVKPNLDMILNAILENMTLADFDHYTKGLVSANNARSKLEKMLSEGRITQVQMNELIANLDKKS
SIO_010081: PAU_RS22110
subclass of: SO_0000673
so part of: PAU_RS22110
location: 27139..27417
location: region:27139-27417:1
so has part: feature:27139-27417:1:exon

WP_012776195.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:27139-27417:1:exon