Neomonachus schauinslandi chromosome Y, ASM220157v2, whole genome shotgun sequence.
Neomonachus schauinslandi (Hawaiian monk seal)
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Phocidae; Neomonachus.
REFSEQ INFORMATION: The reference sequence is identical to\nCM035913.1.\nAssembly name: ASM220157v2\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Johns Hopkins University on\n2021/10/20. The original whole-genome shotgun project has the\naccession NINY00000000.2.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Johns Hopkins University\nAssembly Date :: 01-JUN-2021\nAssembly Method :: Supernova v. 2.1.1; BioNano Solve v.\n 3.6.1; 3d-dna v. 180419; PILON v. 1.22\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 56.0x\nSequencing Technology :: Illumina HiSeq; BioNano Saphyr; Illumina\n NovaSeq; Oxford Nanopore GridION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Name :: Neomonachus schauinslandi Annotation\n Release 101\nAnnotation Version :: 101\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 9.0\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##
Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: olfactory receptor 2AJ1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 9% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:12.0:RF00092
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
COORDINATES: nucleotide motif:Rfam:12.0:RF00015
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 Proteins
ubiquitin-like modifier-activating enzyme 1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 10 Proteins, and 56% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 6 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 8 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 11 Proteins
COORDINATES: nucleotide motif:Rfam:12.0:RF00026
eukaryotic translation initiation factor 1A, X-chromosomal
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 30 Proteins, and 59% coverage of the annotated genomic feature by RNAseq alignments
heat shock transcription factor, Y-linked-like
COORDINATES: polyA evidence [ECO:0006239]
lysine-specific demethylase 5D, transcript variant X6
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 mRNAs, 1 Protein, and 23% coverage of the annotated genomic feature by RNAseq alignments
lysine-specific demethylase 5D, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 mRNAs, 4 Proteins, and 24% coverage of the annotated genomic feature by RNAseq alignments
lysine-specific demethylase 5D, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 mRNAs, 7 Proteins, and 23% coverage of the annotated genomic feature by RNAseq alignments
lysine-specific demethylase 5D, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 mRNAs, 11 Proteins, and 25% coverage of the annotated genomic feature by RNAseq alignments
lysine-specific demethylase 5D, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 mRNAs, 8 Proteins, and 24% coverage of the annotated genomic feature by RNAseq alignments
lysine-specific demethylase 5D, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 mRNAs, 7 Proteins, and 26% coverage of the annotated genomic feature by RNAseq alignments
lysine-specific demethylase 5D isoform X6
lysine-specific demethylase 5D isoform X5
lysine-specific demethylase 5D isoform X4
lysine-specific demethylase 5D isoform X2
lysine-specific demethylase 5D isoform X3
lysine-specific demethylase 5D isoform X1
zinc finger X-chromosomal protein-like, transcript variant X1
zinc finger X-chromosomal protein-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 6 Proteins, and 46% coverage of the annotated genomic feature by RNAseq alignments
zinc finger X-chromosomal protein-like, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 59% coverage of the annotated genomic feature by RNAseq alignments
zinc finger X-chromosomal protein-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 54% coverage of the annotated genomic feature by RNAseq alignments
zinc finger X-chromosomal protein-like isoform X4
zinc finger X-chromosomal protein-like isoform X3
zinc finger X-chromosomal protein-like isoform X2
zinc finger X-chromosomal protein-like isoform X1
eukaryotic translation initiation factor 2 subunit 3, Y-linked
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs, 27 Proteins, and 82% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 20% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 19 Proteins
neuronal membrane glycoprotein M6-b-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins
OFD1 centriole and centriolar satellite protein
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 5 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments
lysine-specific demethylase 6A, transcript variant X18
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 9 Proteins, and 24% coverage of the annotated genomic feature by RNAseq alignments
lysine-specific demethylase 6A, transcript variant X14
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 3 Proteins, and 27% coverage of the annotated genomic feature by RNAseq alignments
lysine-specific demethylase 6A, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 2 Proteins, and 24% coverage of the annotated genomic feature by RNAseq alignments
lysine-specific demethylase 6A, transcript variant X16
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 2 Proteins, and 25% coverage of the annotated genomic feature by RNAseq alignments
lysine-specific demethylase 6A, transcript variant X9
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 3 Proteins, and 25% coverage of the annotated genomic feature by RNAseq alignments
lysine-specific demethylase 6A, transcript variant X6
lysine-specific demethylase 6A, transcript variant X15
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 4 Proteins, and 25% coverage of the annotated genomic feature by RNAseq alignments
lysine-specific demethylase 6A, transcript variant X8
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 15 Proteins, and 25% coverage of the annotated genomic feature by RNAseq alignments
lysine-specific demethylase 6A, transcript variant X5
lysine-specific demethylase 6A, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 6 Proteins, and 27% coverage of the annotated genomic feature by RNAseq alignments
lysine-specific demethylase 6A, transcript variant X13
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 3 Proteins, and 24% coverage of the annotated genomic feature by RNAseq alignments
lysine-specific demethylase 6A, transcript variant X7
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 2 Proteins, and 23% coverage of the annotated genomic feature by RNAseq alignments
lysine-specific demethylase 6A, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 3 Proteins, and 26% coverage of the annotated genomic feature by RNAseq alignments
lysine-specific demethylase 6A, transcript variant X11
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 2 Proteins, and 26% coverage of the annotated genomic feature by RNAseq alignments
lysine-specific demethylase 6A, transcript variant X2
lysine-specific demethylase 6A, transcript variant X12
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 6 Proteins, and 23% coverage of the annotated genomic feature by RNAseq alignments
lysine-specific demethylase 6A, transcript variant X17
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 2 Proteins, and 21% coverage of the annotated genomic feature by RNAseq alignments
lysine-specific demethylase 6A, transcript variant X10
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 3 Proteins, and 22% coverage of the annotated genomic feature by RNAseq alignments
lysine-specific demethylase 6A isoform X14
lysine-specific demethylase 6A isoform X4
lysine-specific demethylase 6A isoform X9
lysine-specific demethylase 6A isoform X6
lysine-specific demethylase 6A isoform X12
lysine-specific demethylase 6A isoform X8
lysine-specific demethylase 6A isoform X5
lysine-specific demethylase 6A isoform X7
lysine-specific demethylase 6A isoform X10
lysine-specific demethylase 6A isoform X18
lysine-specific demethylase 6A isoform X1
lysine-specific demethylase 6A isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 26% coverage of the annotated genomic feature by RNAseq alignments
ATP-dependent RNA helicase DDX3X-like, transcript variant X6
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 mRNAs, 1 EST, 23 Proteins, and 88% coverage of the annotated genomic feature by RNAseq alignments
ATP-dependent RNA helicase DDX3X-like, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 mRNAs, 1 EST, 6 Proteins, and 87% coverage of the annotated genomic feature by RNAseq alignments
ATP-dependent RNA helicase DDX3X-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 mRNAs, 1 EST, 6 Proteins, and 85% coverage of the annotated genomic feature by RNAseq alignments
ATP-dependent RNA helicase DDX3X-like, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 1 EST, 1 Protein, and 82% coverage of the annotated genomic feature by RNAseq alignments
ATP-dependent RNA helicase DDX3X-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 mRNAs, 1 EST, 10 Proteins, and 85% coverage of the annotated genomic feature by RNAseq alignments
ATP-dependent RNA helicase DDX3X-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 1 EST, 5 Proteins, and 82% coverage of the annotated genomic feature by RNAseq alignments
ATP-dependent RNA helicase DDX3X-like isoform X4
ATP-dependent RNA helicase DDX3X-like isoform X1
ATP-dependent RNA helicase DDX3X-like isoform X5
ATP-dependent RNA helicase DDX3X-like isoform X6
ATP-dependent RNA helicase DDX3X-like isoform X2
ATP-dependent RNA helicase DDX3X-like isoform X3
probable ubiquitin carboxyl-terminal hydrolase FAF-X
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 2 codons; deleted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 mRNAs, 2 ESTs, 11 Proteins, and 47% coverage of the annotated genomic feature by RNAseq alignments
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 2 codons; deleted 2 bases in 2 codons; substituted 2 bases at 2 genomic stop codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: probable ubiquitin carboxyl-terminal hydrolase FAF-X
RNA-binding motif protein, X chromosome-like
probable ubiquitin carboxyl-terminal hydrolase FAF-Y
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, and 40% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins, and 45% coverage of the annotated genomic feature by RNAseq alignments