Borrelia garinii subsp. bavariensis PBi plasmid lp54, complete sequence.
Bacteria; Spirochaetota; Spirochaetia; Spirochaetales; Borreliaceae; Borreliella.
Comparative analysis of the Borrelia garinii genome
Submitted (01-JUN-2004) Genome Analysis, Institute of Molecular Biotechnology, Beutenbergstr. 11, Jena, Thuringia 07745, Germany
REFSEQ INFORMATION: The reference sequence is identical to\nCP000015.1.\n-------------- Genome Center\n Center: Institute of Molecular Biotechnology\n Center code: IMB\n Web site: http://genome.imb-jena.de/\n Contact: gscj-submit@genome.imb-jena.de\n-------------- Project Information\nCenter project name: PBi_lp54\n\n-------------- Summary Statistics\n Sequencing vector: pUC18; 100% of reads\n Chemistry: Dye-terminator Big Dye; 100% of reads\n Assembly program: Phrap; version 0.990329\n Consensusquality: 53506 bases at least Q40\n Consensus quality: 54571 bases at least Q30\n Consensus quality: 55183 bases at least Q20\n Coverage: 5.09\n--------------\nAnnotation:\nGenes are annotated according to the Borrelia burgdorferi B31\northologs (AE000790.1).\n--------------\nSequence Quality Assessment:\n This entry has been annotated with sequence quality\n estimates computed by the Phrap assembly program.\n All manually edited bases have been reduced to quality zero.\n Quality levels above 40 are expected to have less than\n 1 error in 10,000 bp.\n Base-by-base quality values are not generally visible from the\n GenBank flat file format but are available as part\n of this entry's ASN.1 file.\n----------------------.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 09/11/2022 21:49:27\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.2\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 958\nCDSs (total) :: 917\nGenes (coding) :: 897\nCDSs (with protein) :: 897\nGenes (RNA) :: 41\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 32\nncRNAs :: 3\nPseudo Genes (total) :: 20\nCDSs (without protein) :: 20\nPseudo Genes (ambiguous residues) :: 0 of 20\nPseudo Genes (frameshifted) :: 12 of 20\nPseudo Genes (incomplete) :: 5 of 20\nPseudo Genes (internal stop) :: 8 of 20\nPseudo Genes (multiple problems) :: 5 of 20\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_011187144.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011187145.1
COORDINATES: similar to AA sequence:RefSeq:WP_012615015.1
COORDINATES: similar to AA sequence:RefSeq:WP_012665592.1
COORDINATES: similar to AA sequence:RefSeq:WP_011703769.1
COORDINATES: similar to AA sequence:RefSeq:WP_010258106.1
COORDINATES: protein motif:HMM:NF015399.2
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014023194.1
COORDINATES: protein motif:HMM:NF016941.2
COORDINATES: protein motif:HMM:TIGR01606.1
GO:0034290 - holin activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF017132.2
BlyB family putative holin accessory protein
COORDINATES: similar to AA sequence:RefSeq:WP_011703776.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011703777.1
COORDINATES: similar to AA sequence:RefSeq:WP_011187158.1
COORDINATES: similar to AA sequence:RefSeq:WP_010258125.1
COORDINATES: similar to AA sequence:RefSeq:WP_010258127.1
COORDINATES: similar to AA sequence:RefSeq:WP_014695375.1
COORDINATES: similar to AA sequence:RefSeq:WP_011703782.1
chromosome replication/partitioning protein
COORDINATES: protein motif:HMM:NF015173.2
COORDINATES: similar to AA sequence:RefSeq:WP_011703785.1
GO:0016021 - integral component of membrane [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014695369.1
COORDINATES: similar to AA sequence:RefSeq:WP_014695368.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_012539443.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
PBSX family phage terminase large subunit
COORDINATES: similar to AA sequence:RefSeq:WP_011703791.1
COORDINATES: similar to AA sequence:RefSeq:WP_011703792.1
COORDINATES: similar to AA sequence:RefSeq:WP_011187170.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890384.1
peptide ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011703795.1
COORDINATES: similar to AA sequence:RefSeq:WP_012784245.1
COORDINATES: protein motif:HMM:NF018125.2
COORDINATES: protein motif:HMM:NF018761.2
COORDINATES: protein motif:HMM:NF014983.2
COORDINATES: similar to AA sequence:RefSeq:WP_011187180.1
COORDINATES: protein motif:HMM:NF024429.2
COORDINATES: similar to AA sequence:RefSeq:WP_010257720.1
COORDINATES: protein motif:HMM:NF017382.2
COORDINATES: protein motif:HMM:NF017435.2
COORDINATES: similar to AA sequence:RefSeq:WP_014695348.1
COORDINATES: similar to AA sequence:RefSeq:WP_010257732.1
COORDINATES: similar to AA sequence:RefSeq:WP_011703808.1
COORDINATES: protein motif:HMM:NF017448.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014695339.1
COORDINATES: similar to AA sequence:RefSeq:WP_014695338.1
COORDINATES: similar to AA sequence:RefSeq:WP_011703813.1
COORDINATES: protein motif:HMM:NF016969.2
COORDINATES: protein motif:HMM:NF017423.2
COORDINATES: similar to AA sequence:RefSeq:WP_014695333.1
COORDINATES: similar to AA sequence:RefSeq:WP_012615000.1
COORDINATES: similar to AA sequence:RefSeq:WP_012784236.1
COORDINATES: similar to AA sequence:RefSeq:WP_011187204.1
COORDINATES: similar to AA sequence:RefSeq:WP_010257151.1
COORDINATES: similar to AA sequence:RefSeq:WP_012614997.1
COORDINATES: similar to AA sequence:RefSeq:WP_010257157.1
COORDINATES: similar to AA sequence:RefSeq:WP_014695325.1
COORDINATES: similar to AA sequence:RefSeq:WP_011187209.1
COORDINATES: similar to AA sequence:RefSeq:WP_011187210.1
COORDINATES: protein motif:HMM:NF033729.0
COORDINATES: similar to AA sequence:RefSeq:WP_011187214.1
COORDINATES: similar to AA sequence:RefSeq:WP_014695321.1
COORDINATES: similar to AA sequence:RefSeq:WP_012614999.1
COORDINATES: similar to AA sequence:RefSeq:WP_010257191.1
COORDINATES: similar to AA sequence:RefSeq:WP_012784240.1
GO:0050797 - thymidylate synthase (FAD) activity [Evidence IEA]
GO:0009265 - 2'-deoxyribonucleotide biosynthetic process [Evidence IEA]