Borrelia garinii subsp. bavariensis PBi plasmid cp26, complete sequence.
Bacteria; Spirochaetota; Spirochaetia; Spirochaetales; Borreliaceae; Borreliella.
Comparative analysis of the Borrelia garinii genome
Submitted (01-JUN-2004) Genome Analysis, Institute of Molecular Biotechnology, Beutenbergstr. 11, Jena, Thuringia 07745, Germany
REFSEQ INFORMATION: The reference sequence is identical to\nCP000014.1.\n-------------- Genome Center\n Center: Institute of Molecular Biotechnology\n Center code: IMB\n Web site: http://genome.imb-jena.de/\n Contact: gscj-submit@genome.imb-jena.de\n-------------- Project Information\nCenter project name: PBi_cp26\n-------------- Summary Statistics\n Sequencing vector: pUC18; 100% of reads\n Chemistry: Dye-terminator Big Dye; 100% of reads\n Assembly program: Phrap; version 0.990329\n Consensusquality: 23861 bases at least Q40\n Consensus quality: 25147 bases at least Q30\n Consensus quality: 26131 bases at least Q20\n Coverage: 3.65\n--------------\nAnnotation:\nGenes are annotated according to the Borrelia burgdorferi B31\northologs (AE000792.1).\n--------------\nSequence Quality Assessment:\n This entry has been annotated with sequence quality\n estimates computed by the Phrap assembly program.\n All manually edited bases have been reduced to quality zero.\n Quality levels above 40 are expected to have less than\n 1 error in 10,000 bp.\n Base-by-base quality values are not generally visible from the\n GenBank flat file format but are available as part\n of this entry's ASN.1 file.\n----------------------.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 09/11/2022 21:49:27\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.2\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 958\nCDSs (total) :: 917\nGenes (coding) :: 897\nCDSs (with protein) :: 897\nGenes (RNA) :: 41\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 32\nncRNAs :: 3\nPseudo Genes (total) :: 20\nCDSs (without protein) :: 20\nPseudo Genes (ambiguous residues) :: 0 of 20\nPseudo Genes (frameshifted) :: 12 of 20\nPseudo Genes (incomplete) :: 5 of 20\nPseudo Genes (internal stop) :: 8 of 20\nPseudo Genes (multiple problems) :: 5 of 20\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_010890591.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011187119.1
COORDINATES: similar to AA sequence:RefSeq:WP_010256138.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890590.1
GO:0019191 - cellobiose transmembrane transporter activity [Evidence IEA]; GO:0008982 - protein-N(PI)-phosphohistidine-sugar phosphotransferase activity [Evidence IEA]
GO:0009401 - phosphoenolpyruvate-dependent sugar phosphotransferase system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012622042.1
PTS lactose/cellobiose transporter subunit IIA
COORDINATES: similar to AA sequence:RefSeq:WP_014654045.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890588.1
COORDINATES: similar to AA sequence:RefSeq:WP_010256153.1
COORDINATES: similar to AA sequence:RefSeq:WP_014654048.1
COORDINATES: similar to AA sequence:RefSeq:WP_011600705.1
COORDINATES: similar to AA sequence:RefSeq:WP_010258218.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890586.1
COORDINATES: similar to AA sequence:RefSeq:WP_012593126.1
chromosome replication/partitioning protein
COORDINATES: similar to AA sequence:RefSeq:WP_011600709.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_012593130.1
peptide ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011600712.1
COORDINATES: similar to AA sequence:RefSeq:WP_012593116.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003922 - GMP synthase (glutamine-hydrolyzing) activity [Evidence IEA]; GO:0016462 - pyrophosphatase activity [Evidence IEA]
GO:0006177 - GMP biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010890595.1
GO:0009279 - cell outer membrane [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010256195.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890593.1
COORDINATES: similar to AA sequence:RefSeq:WP_014540089.1
COORDINATES: similar to AA sequence:RefSeq:WP_011600718.1
COORDINATES: similar to AA sequence:RefSeq:WP_014654067.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890599.1
COORDINATES: similar to AA sequence:RefSeq:WP_014654069.1
ankyrin repeat domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011187143.1
GO:0008982 - protein-N(PI)-phosphohistidine-sugar phosphotransferase activity [Evidence IEA]