Tetragenococcus koreensis strain KCTC 3924 plasmid pTK, complete sequence.
Bacteria; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Tetragenococcus.
Tetragenococcus koreensis sp. nov., a novel rhamnolipid-producing bacterium
Int J Syst Evol Microbiol 55 (Pt 4), 1409-1413 (2005)
Submitted (15-MAR-2018) Life Science, Chung-Ang University, 84, Heukseok-Ro, Dongjak-Gu, Seoul 156-756, Korea, Republic of
REFSEQ INFORMATION: The reference sequence is identical to\nCP027787.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP3 v. 3.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 267.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/25/2023 23:45:50\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,646\nCDSs (total) :: 2,564\nGenes (coding) :: 2,495\nCDSs (with protein) :: 2,495\nGenes (RNA) :: 82\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 63\nncRNAs :: 4\nPseudo Genes (total) :: 69\nCDSs (without protein) :: 69\nPseudo Genes (ambiguous residues) :: 0 of 69\nPseudo Genes (frameshifted) :: 32 of 69\nPseudo Genes (incomplete) :: 32 of 69\nPseudo Genes (internal stop) :: 8 of 69\nPseudo Genes (multiple problems) :: 3 of 69\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Tetragenococcus koreensis
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_002828239.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_064305258.1
GO:0004803 - transposase activity [Evidence IEA]
IS6-like element IS1216 family transposase
COORDINATES: protein motif:HMM:NF014581.2
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014082555.1
COORDINATES: similar to AA sequence:RefSeq:WP_015060391.1
COORDINATES: similar to AA sequence:RefSeq:WP_003553350.1
relaxase/mobilization nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_002449121.1
plasmid mobilization relaxosome protein MobC
COORDINATES: similar to AA sequence:RefSeq:WP_010742174.1
COORDINATES: similar to AA sequence:RefSeq:WP_009221479.1
LytTR family DNA-binding domain-containing protein