Brachybacterium halotolerans subsp. kimchii strain CBA3105 plasmid pCBA3105-1, complete sequence.
Brachybacterium halotolerans subsp. kimchii
Bacteria; Actinobacteria; Micrococcales; Dermabacteraceae; Brachybacterium; Brachybacterium halotolerans.
Genomic analysis of Brachybacterium sp. CBA3105
Submitted (02-NOV-2021) Microbiology and Functionality Research Group, World Institute of Kimchi, 86, Kimchi-ro, Nam-gu, Gwangju, Gwangju 61755, South Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP086255.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 4\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 169.0x\nSequencing Technology :: PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 11/26/2022 03:52:24\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,693\nCDSs (total) :: 3,631\nGenes (coding) :: 3,593\nCDSs (with protein) :: 3,593\nGenes (RNA) :: 62\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 50\nncRNAs :: 3\nPseudo Genes (total) :: 38\nCDSs (without protein) :: 38\nPseudo Genes (ambiguous residues) :: 0 of 38\nPseudo Genes (frameshifted) :: 4 of 38\nPseudo Genes (incomplete) :: 30 of 38\nPseudo Genes (internal stop) :: 5 of 38\nPseudo Genes (multiple problems) :: 1 of 38\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Brachybacterium halotolerans subsp. kimchii
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_013884804.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF025052.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013162107.1
COORDINATES: similar to AA sequence:RefSeq:WP_005053874.1
plasmid mobilization relaxosome protein MobC
COORDINATES: similar to AA sequence:RefSeq:WP_013347380.1
COORDINATES: protein motif:HMM:NF012655.2
COORDINATES: similar to AA sequence:RefSeq:WP_003856265.1
COORDINATES: similar to AA sequence:RefSeq:WP_013348059.1
COORDINATES: similar to AA sequence:RefSeq:WP_013347384.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
TraM recognition domain-containing protein
COORDINATES: protein motif:HMM:NF025881.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017558032.1
COORDINATES: similar to AA sequence:RefSeq:WP_009358110.1
COORDINATES: similar to AA sequence:RefSeq:WP_013347389.1
COORDINATES: similar to AA sequence:RefSeq:WP_013347392.1
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF013073.2
COORDINATES: similar to AA sequence:RefSeq:WP_013347397.1
COORDINATES: similar to AA sequence:RefSeq:WP_013127579.1
GO:0097573 - glutathione oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF037425.2
COORDINATES: similar to AA sequence:RefSeq:WP_005053824.1
GO:0003697 - single-stranded DNA binding [Evidence IEA]