Spiroplasma endosymbiont of Phyllotreta cruciferae isolate Spiroplasma_endosymbiont_of_Phyllotreta_cruciferae chromosome 1.
Spiroplasma endosymbiont of Phyllotreta cruciferae
Bacteria; Mycoplasmatota; Mollicutes; Entomoplasmatales; Spiroplasmataceae; Spiroplasma.
Submitted (01-NOV-2021) ROTHAMSTED RESEARCH, Applied Bioinformatics, W Common, Harpenden, AL5 2JQ, United Kingdom
REFSEQ INFORMATION: The reference sequence is identical to\nOU953854.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 08/02/2022 04:14:42\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.2\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 1,000\nCDSs (total) :: 989\nGenes (coding) :: 948\nCDSs (with protein) :: 948\nGenes (RNA) :: 11\ntRNAs :: 10\nncRNAs :: 1\nPseudo Genes (total) :: 41\nCDSs (without protein) :: 41\nPseudo Genes (ambiguous residues) :: 0 of 41\nPseudo Genes (frameshifted) :: 12 of 41\nPseudo Genes (incomplete) :: 23 of 41\nPseudo Genes (internal stop) :: 15 of 41\nPseudo Genes (multiple problems) :: 8 of 41\n##Genome-Annotation-Data-END##
Spiroplasma_endosymbiont_of_Phyllotreta_crucifer ae
COORDINATES: ab initio prediction:GeneMarkS-2+
GO:0015074 - DNA integration [Evidence IEA]
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_004029089.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004028499.1
COORDINATES: similar to AA sequence:RefSeq:WP_004028500.1
COORDINATES: similar to AA sequence:RefSeq:WP_004029091.1
COORDINATES: protein motif:HMM:NF018488.2
COORDINATES: protein motif:HMM:NF016302.2
COORDINATES: protein motif:HMM:NF012651.2
COORDINATES: similar to AA sequence:RefSeq:WP_004028503.1
COORDINATES: similar to AA sequence:RefSeq:WP_004028504.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004028505.1
two-component regulator system yiem receptor component protein
COORDINATES: similar to AA sequence:RefSeq:WP_004028506.1
COORDINATES: similar to AA sequence:RefSeq:WP_004028507.1
COORDINATES: similar to AA sequence:RefSeq:WP_004028508.1
COORDINATES: similar to AA sequence:RefSeq:WP_004029094.1
GO:0004127 - cytidylate kinase activity [Evidence IEA]
GO:0015949 - nucleobase-containing small molecule interconversion [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016338703.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA]; GO:0043022 - ribosome binding [Evidence IEA]
GO:0042254 - ribosome biogenesis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004028511.1
GO:0004367 - glycerol-3-phosphate dehydrogenase [NAD+] activity [Evidence IEA]; GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]
GO:0006072 - glycerol-3-phosphate metabolic process [Evidence IEA]
NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_001542260.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF019887.2
GO:0016787 - hydrolase activity [Evidence IEA]
GO:0008152 - metabolic process [Evidence IEA]
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_016340559.1
GO:0046537 - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity [Evidence IEA]
GO:0006096 - glycolytic process [Evidence IEA]
2,3-bisphosphoglycerate-independent phosphoglycerate mutase
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF033563.0
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00675.1
GO:0003886 - DNA (cytosine-5-)-methyltransferase activity [Evidence IEA]
GO:0006304 - DNA modification [Evidence IEA]
integrase core domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004028515.1
CPBP family intramembrane metalloprotease
COORDINATES: similar to AA sequence:RefSeq:WP_004028518.1
COORDINATES: similar to AA sequence:RefSeq:WP_016338712.1
GO:0042586 - peptide deformylase activity [Evidence IEA]
GO:0036211 - protein modification process [Evidence IEA]
COORDINATES: protein motif:HMM:NF015559.2
GO:0052913 - 16S rRNA (guanine(966)-N(2))-methyltransferase activity [Evidence IEA]
GO:0031167 - rRNA methylation [Evidence IEA]
16S rRNA (guanine(966)-N(2))-methyltransferase RsmD
COORDINATES: similar to AA sequence:RefSeq:WP_016340565.1
GO:0004385 - guanylate kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004028522.1
incomplete; too short partial abutting assembly gap; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB
COORDINATES: similar to AA sequence:RefSeq:WP_016339045.1
COORDINATES: similar to AA sequence:RefSeq:WP_004027571.1
rhomboid family intramembrane serine protease
COORDINATES: similar to AA sequence:RefSeq:WP_004027572.1
COORDINATES: similar to AA sequence:RefSeq:WP_004028802.1
GO:0005887 - integral component of plasma membrane [Evidence IEA]
GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA]
GO:0009306 - protein secretion [Evidence IEA]; GO:0006508 - proteolysis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004028803.1
GO:0004822 - isoleucine-tRNA ligase activity [Evidence IEA]
GO:0006428 - isoleucyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004027575.1
COORDINATES: similar to AA sequence:RefSeq:WP_004027576.1
COORDINATES: similar to AA sequence:RefSeq:WP_004027577.1
COORDINATES: similar to AA sequence:RefSeq:WP_016339053.1
GO:0003924 - GTPase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004028805.1
COORDINATES: similar to AA sequence:RefSeq:WP_004027580.1
GO:0016434 - rRNA (cytosine) methyltransferase activity [Evidence IEA]
16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH
COORDINATES: protein motif:HMM:NF014439.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
division/cell wall cluster transcriptional repressor MraZ
COORDINATES: similar to AA sequence:RefSeq:WP_016339057.1
GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]; GO:0000315 - organellar large ribosomal subunit [Evidence IEA]
GO:0003735 - structural constituent of ribosome [Evidence IEA]
COORDINATES: protein motif:HMM:NF013539.2
GO:0097367 - carbohydrate derivative binding [Evidence IEA]
GO:1901135 - carbohydrate derivative metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF015129.2
COORDINATES: protein motif:HMM:NF036799.2
COORDINATES: protein motif:HMM:NF015448.2
GO:0004826 - phenylalanine-tRNA ligase activity [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
phenylalanine--tRNA ligase beta subunit-related protein
COORDINATES: protein motif:HMM:NF013734.2
COORDINATES: similar to AA sequence:RefSeq:WP_004027586.1
phenylalanine--tRNA ligase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_011183089.1
GO:0004830 - tryptophan-tRNA ligase activity [Evidence IEA]
GO:0006436 - tryptophanyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF038029.1
COORDINATES: protein motif:HMM:NF012472.2
COORDINATES: similar to AA sequence:RefSeq:WP_004027700.1
COORDINATES: similar to AA sequence:RefSeq:WP_004028840.1
COORDINATES: similar to AA sequence:RefSeq:WP_016341025.1
COORDINATES: similar to AA sequence:RefSeq:WP_004027727.1
GO:0008959 - phosphate acetyltransferase activity [Evidence IEA]
GO:0006086 - acetyl-CoA biosynthetic process from pyruvate [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004027728.1
COORDINATES: similar to AA sequence:RefSeq:WP_004028842.1
COORDINATES: similar to AA sequence:RefSeq:WP_016341030.1
COORDINATES: similar to AA sequence:RefSeq:WP_004027731.1
incomplete; too short partial abutting assembly gap; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004027847.1
COORDINATES: similar to AA sequence:RefSeq:WP_016341221.1
GO:0008408 - 3'-5' exonuclease activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
GO:0006261 - DNA-templated DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004028005.1
4-diphosphocytidyl-2C-methyl-D-erythritol kinase
COORDINATES: similar to AA sequence:RefSeq:WP_004028006.1
GO:0000179 - rRNA (adenine-N6,N6-)-dimethyltransferase activity [Evidence IEA]
16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA
COORDINATES: similar to AA sequence:RefSeq:WP_004028007.1
GO:0043822 - ribonuclease M5 activity [Evidence IEA]
GO:0006364 - rRNA processing [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004028008.1
COORDINATES: similar to AA sequence:RefSeq:WP_004028009.1
COORDINATES: similar to AA sequence:RefSeq:WP_004028010.1
COORDINATES: similar to AA sequence:RefSeq:WP_016339403.1
COORDINATES: similar to AA sequence:RefSeq:WP_016341230.1
COORDINATES: similar to AA sequence:RefSeq:WP_004028013.1
COORDINATES: similar to AA sequence:RefSeq:WP_004028014.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA]
GO:0006400 - tRNA modification [Evidence IEA]
tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE
COORDINATES: similar to AA sequence:RefSeq:WP_016341237.1
GO:0031224 - intrinsic component of membrane [Evidence IEA]
GO:0003674 - molecular_function [Evidence IEA]
GO:0051205 - protein insertion into membrane [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004028018.1
GO:0004526 - ribonuclease P activity [Evidence IEA]
GO:0006396 - RNA processing [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003397591.1
COORDINATES: similar to AA sequence:RefSeq:WP_004028020.1
GO:0003938 - IMP dehydrogenase activity [Evidence IEA]
GO:0009152 - purine ribonucleotide biosynthetic process [Evidence IEA]
COORDINATES: nucleotide motif:Rfam:14.4:RF00167
purine riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_016338415.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003688 - DNA replication origin binding [Evidence IEA]
GO:0006270 - DNA replication initiation [Evidence IEA]; GO:0006275 - regulation of DNA replication [Evidence IEA]
chromosomal replication initiator protein DnaA
COORDINATES: similar to AA sequence:RefSeq:WP_016338416.1
GO:0009360 - DNA polymerase III complex [Evidence IEA]
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004028023.1
GO:0009330 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) complex [Evidence IEA]
GO:0003918 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity [Evidence IEA]
GO:0006265 - DNA topological change [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
DNA topoisomerase (ATP-hydrolyzing) subunit B
COORDINATES: similar to AA sequence:RefSeq:WP_004028024.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]; GO:0003918 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity [Evidence IEA]
GO:0006259 - DNA metabolic process [Evidence IEA]; GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000884181.1
GO:0004828 - serine-tRNA ligase activity [Evidence IEA]
GO:0006434 - seryl-tRNA aminoacylation [Evidence IEA]
signal recognition particle sRNA small type
COORDINATES: nucleotide motif:Rfam:14.4:RF00169
Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_016340264.1
GO:0008251 - tRNA-specific adenosine deaminase activity [Evidence IEA]
GO:0002100 - tRNA wobble adenosine to inosine editing [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004028027.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF025044.2
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004028923.1
GO:0004798 - thymidylate kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004028030.1
COORDINATES: similar to AA sequence:RefSeq:WP_004028924.1
GO:0008168 - methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004028032.1
GO:0016879 - ligase activity, forming carbon-nitrogen bonds [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016340271.1
GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0004222 - metalloendopeptidase activity [Evidence IEA]
GO:0051301 - cell division [Evidence IEA]; GO:0006508 - proteolysis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004028034.1
COORDINATES: similar to AA sequence:RefSeq:WP_004028035.1
COORDINATES: protein motif:HMM:NF013380.2
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0017150 - tRNA dihydrouridine synthase activity [Evidence IEA]
GO:0008033 - tRNA processing [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004028037.1
GO:0004824 - lysine-tRNA ligase activity [Evidence IEA]
GO:0006430 - lysyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004028038.1
COORDINATES: similar to AA sequence:RefSeq:WP_004028039.1
COORDINATES: similar to AA sequence:RefSeq:WP_004028040.1
GO:0022627 - cytosolic small ribosomal subunit [Evidence IEA]; GO:0000314 - organellar small ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004028041.1
COORDINATES: similar to AA sequence:RefSeq:WP_016338440.1
COORDINATES: protein motif:HMM:NF012593.2
dicarboxylate/amino acid:cation symporter
COORDINATES: protein motif:HMM:NF019604.2
GO:0016491 - oxidoreductase activity [Evidence IEA]
oxygen-insensitive NAD(P)H nitroreductase
COORDINATES: protein motif:HMM:NF000612.0
COORDINATES: protein motif:HMM:NF022497.2
COORDINATES: similar to AA sequence:RefSeq:WP_004027713.1
COORDINATES: protein motif:HMM:NF022310.2
COORDINATES: similar to AA sequence:RefSeq:WP_004027994.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012610.2
COORDINATES: protein motif:HMM:NF014437.2
GO:0008982 - protein-N(PI)-phosphohistidine-sugar phosphotransferase activity [Evidence IEA]
GO:0009401 - phosphoenolpyruvate-dependent sugar phosphotransferase system [Evidence IEA]
COORDINATES: protein motif:HMM:NF013239.2
COORDINATES: similar to AA sequence:RefSeq:WP_004028548.1
GO:0004521 - endoribonuclease activity [Evidence IEA]
GO:0006402 - mRNA catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF014880.2
GO:0006614 - SRP-dependent cotranslational protein targeting to membrane [Evidence IEA]
signal recognition particle receptor subunit alpha
COORDINATES: protein motif:HMM:NF012662.2
COORDINATES: protein motif:HMM:NF014972.2
COORDINATES: protein motif:HMM:NF012899.2
COORDINATES: similar to AA sequence:RefSeq:WP_004029112.1
GO:0008135 - translation factor activity, RNA binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF013424.2
undecaprenyl diphosphate synthase family protein
COORDINATES: protein motif:HMM:TIGR00055.1
GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013327.2
COORDINATES: similar to AA sequence:RefSeq:WP_004028570.1
GO:0030604 - 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity [Evidence IEA]
GO:0019288 - isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway [Evidence IEA]
1-deoxy-D-xylulose-5-phosphate reductoisomerase
COORDINATES: similar to AA sequence:RefSeq:WP_004029114.1
GO:0004222 - metalloendopeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016338736.1
GO:0008408 - 3'-5' exonuclease activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016340588.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF023393.2
recombination protein O N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004028575.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004820 - glycine-tRNA ligase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO:0006426 - glycyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004028576.1
GO:0003896 - DNA primase activity [Evidence IEA]
GO:0006269 - DNA replication, synthesis of RNA primer [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016340592.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_004029118.1
COORDINATES: similar to AA sequence:RefSeq:WP_004028579.1
Nif3-like dinuclear metal center hexameric protein
COORDINATES: similar to AA sequence:RefSeq:WP_004029119.1
GO:0051745 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity [Evidence IEA]
GO:0009240 - isopentenyl diphosphate biosynthetic process [Evidence IEA]; GO:0046677 - response to antibiotic [Evidence IEA]; GO:0015968 - stringent response [Evidence IEA]
4-hydroxy-3-methylbut-2-enyl diphosphate reductase
COORDINATES: similar to AA sequence:RefSeq:WP_004028581.1
COORDINATES: similar to AA sequence:RefSeq:WP_004028583.1
COORDINATES: similar to AA sequence:RefSeq:WP_004028585.1
GO:0015297 - antiporter activity [Evidence IEA]; GO:0042910 - xenobiotic transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004028587.1
COORDINATES: similar to AA sequence:RefSeq:WP_015967969.1
COORDINATES: similar to AA sequence:RefSeq:WP_004028563.1
COORDINATES: protein motif:HMM:NF012372.2
COORDINATES: similar to AA sequence:RefSeq:WP_004027613.1
COORDINATES: similar to AA sequence:RefSeq:WP_015979226.1
COORDINATES: similar to AA sequence:RefSeq:WP_004028734.1
COORDINATES: similar to AA sequence:RefSeq:WP_004028553.1
COORDINATES: protein motif:HMM:NF015776.2
GO:0006259 - DNA metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004028247.1
COORDINATES: similar to AA sequence:RefSeq:WP_004027979.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076612212.1
COORDINATES: protein motif:HMM:NF013401.2
COORDINATES: similar to AA sequence:RefSeq:WP_004028114.1
GO:0016684 - oxidoreductase activity, acting on peroxide as acceptor [Evidence IEA]; GO:0008379 - thioredoxin peroxidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016339358.1
4Fe-4S single cluster domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004028901.1
COORDINATES: similar to AA sequence:RefSeq:WP_004028902.1
COORDINATES: similar to AA sequence:RefSeq:WP_004028903.1
COORDINATES: protein motif:HMM:NF024487.2
COORDINATES: protein motif:HMM:NF024486.2
COORDINATES: similar to AA sequence:RefSeq:WP_002942223.1
COORDINATES: similar to AA sequence:RefSeq:WP_004027967.1
COORDINATES: similar to AA sequence:RefSeq:WP_004027636.1
COORDINATES: protein motif:HMM:NF039260.1
MupG family TIM beta-alpha barrel fold protein
COORDINATES: protein motif:HMM:NF003915.0
N-acetylmuramic acid 6-phosphate etherase
COORDINATES: protein motif:HMM:NF012587.2
MurR/RpiR family transcriptional regulator
COORDINATES: protein motif:HMM:NF013577.2
COORDINATES: similar to AA sequence:RefSeq:WP_004028831.1
COORDINATES: similar to AA sequence:RefSeq:WP_004027720.1
COORDINATES: similar to AA sequence:RefSeq:WP_004027617.1
COORDINATES: similar to AA sequence:RefSeq:WP_004028250.1
incomplete; too short partial abutting assembly gap; missing N-terminus; Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF013314.2
COORDINATES: protein motif:HMM:NF012398.2
COORDINATES: similar to AA sequence:RefSeq:WP_016338769.1
COORDINATES: protein motif:HMM:NF013703.2
COORDINATES: similar to AA sequence:RefSeq:WP_004028609.1
COORDINATES: similar to AA sequence:RefSeq:WP_004027792.1
COORDINATES: similar to AA sequence:RefSeq:WP_015979233.1
COORDINATES: similar to AA sequence:RefSeq:WP_004027717.1
COORDINATES: similar to AA sequence:RefSeq:WP_004028733.1
COORDINATES: similar to AA sequence:RefSeq:WP_016340614.1
GO:0004799 - thymidylate synthase activity [Evidence IEA]
GO:0009265 - 2'-deoxyribonucleotide biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012413.2
COORDINATES: protein motif:HMM:NF013702.2
lysophospholipid acyltransferase family protein
COORDINATES: protein motif:HMM:NF014884.2
COORDINATES: protein motif:HMM:TIGR02644.1
GO:0006206 - pyrimidine nucleobase metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF019448.2
COORDINATES: protein motif:HMM:TIGR01547.1
PBSX family phage terminase large subunit
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: nucleotide motif:Rfam:14.4:RF00557
ribosomal protein L10 leader region; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_016341210.1
GO:0015934 - large ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016341209.1
COORDINATES: similar to AA sequence:RefSeq:WP_004028283.1
COORDINATES: protein motif:HMM:TIGR01494.1
GO:0016021 - integral component of membrane [Evidence IEA]
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0005215 - transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012892.2
COORDINATES: protein motif:HMM:NF013777.2
winged helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_004027990.1
COORDINATES: similar to AA sequence:RefSeq:WP_004028980.1
COORDINATES: similar to AA sequence:RefSeq:WP_004028207.1
GO:0046872 - metal ion binding [Evidence IEA]; GO:0004540 - ribonuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016340865.1
COORDINATES: protein motif:HMM:NF012601.2
COORDINATES: similar to AA sequence:RefSeq:WP_004028210.1
COORDINATES: similar to AA sequence:RefSeq:WP_016340862.1
COORDINATES: protein motif:HMM:NF014627.2
COORDINATES: similar to AA sequence:RefSeq:WP_004027830.1
COORDINATES: similar to AA sequence:RefSeq:WP_004027829.1
COORDINATES: similar to AA sequence:RefSeq:WP_016341104.1
COORDINATES: similar to AA sequence:RefSeq:WP_004027825.1
COORDINATES: similar to AA sequence:RefSeq:WP_004027821.1
COORDINATES: similar to AA sequence:RefSeq:WP_004027820.1
COORDINATES: similar to AA sequence:RefSeq:WP_004027819.1
GO:0009408 - response to heat [Evidence IEA]
heat-inducible transcriptional repressor HrcA
COORDINATES: similar to AA sequence:RefSeq:WP_004027818.1
COORDINATES: similar to AA sequence:RefSeq:WP_004027817.1
GO:0006457 - protein folding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02349.1
GO:0005515 - protein binding [Evidence IEA]
GO:0006457 - protein folding [Evidence IEA]; GO:0009408 - response to heat [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004027815.1
rhodanese-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004027814.1
GO:0004654 - polyribonucleotide nucleotidyltransferase activity [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
GO:0006402 - mRNA catabolic process [Evidence IEA]; GO:0006396 - RNA processing [Evidence IEA]
polyribonucleotide nucleotidyltransferase
COORDINATES: protein motif:HMM:NF014554.2
GO:0043811 - phosphate:acyl-[acyl carrier protein] acyltransferase activity [Evidence IEA]
GO:0008610 - lipid biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF015563.2
COORDINATES: similar to AA sequence:RefSeq:WP_004028398.1
GO:0004585 - ornithine carbamoyltransferase activity [Evidence IEA]
GO:0042450 - arginine biosynthetic process via ornithine [Evidence IEA]
COORDINATES: protein motif:HMM:NF014344.2
GO:0016990 - arginine deiminase activity [Evidence IEA]
GO:0006527 - arginine catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004028396.1
COORDINATES: similar to AA sequence:RefSeq:WP_004027894.1
COORDINATES: similar to AA sequence:RefSeq:WP_004027686.1
COORDINATES: similar to AA sequence:RefSeq:WP_004027684.1
COORDINATES: similar to AA sequence:RefSeq:WP_004027682.1
COORDINATES: similar to AA sequence:RefSeq:WP_004027681.1
COORDINATES: similar to AA sequence:RefSeq:WP_015974062.1
COORDINATES: similar to AA sequence:RefSeq:WP_004027939.1
COORDINATES: similar to AA sequence:RefSeq:WP_004027941.1
helitron helicase-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016365427.1
GO:0006094 - gluconeogenesis [Evidence IEA]; GO:0019682 - glyceraldehyde-3-phosphate metabolic process [Evidence IEA]; GO:0006096 - glycolytic process [Evidence IEA]
type I glyceraldehyde-3-phosphate dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_004028294.1
COORDINATES: similar to AA sequence:RefSeq:WP_004028295.1
COORDINATES: similar to AA sequence:RefSeq:WP_004028296.1
GO:0005215 - transporter activity [Evidence IEA]
folate family ECF transporter S component
COORDINATES: similar to AA sequence:RefSeq:WP_004028297.1
bifunctional folylpolyglutamate synthase/dihydrofolate synthase
COORDINATES: similar to AA sequence:RefSeq:WP_016338549.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]
GO:0006289 - nucleotide-excision repair [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004028299.1
COORDINATES: similar to AA sequence:RefSeq:WP_004028101.1
COORDINATES: protein motif:HMM:NF012870.2
COORDINATES: similar to AA sequence:RefSeq:WP_004027992.1
COORDINATES: protein motif:HMM:NF036834.2
COORDINATES: protein motif:HMM:NF019344.2
COORDINATES: protein motif:HMM:NF021915.2
COORDINATES: protein motif:HMM:TIGR00331.1
COORDINATES: similar to AA sequence:RefSeq:WP_004027816.1
COORDINATES: protein motif:HMM:NF015670.2
COORDINATES: protein motif:HMM:NF013318.2
COORDINATES: protein motif:HMM:NF012243.2
COORDINATES: protein motif:HMM:NF012784.2
COORDINATES: similar to AA sequence:RefSeq:WP_004027813.1
COORDINATES: similar to AA sequence:RefSeq:WP_004028872.1
GO:0004525 - ribonuclease III activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004028679.1
COORDINATES: protein motif:HMM:NF013704.2
COORDINATES: protein motif:HMM:NF017701.2
COORDINATES: similar to AA sequence:RefSeq:WP_002883819.1
GO:0004845 - uracil phosphoribosyltransferase activity [Evidence IEA]
GO:0009116 - nucleoside metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004028355.1
COORDINATES: similar to AA sequence:RefSeq:WP_004028354.1
GO:0000276 - mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) [Evidence IEA]; GO:0045264 - plasma membrane proton-transporting ATP synthase complex, coupling factor F(o) [Evidence IEA]; GO:0045263 - proton-transporting ATP synthase complex, coupling factor F(o) [Evidence IEA]
GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism [Evidence IEA]
GO:0015986 - proton motive force-driven ATP synthesis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016340362.1
COORDINATES: similar to AA sequence:RefSeq:WP_004028352.1
COORDINATES: similar to AA sequence:RefSeq:WP_004028351.1
GO:0000275 - mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1) [Evidence IEA]; GO:0045262 - plasma membrane proton-transporting ATP synthase complex, catalytic core F(1) [Evidence IEA]; GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1) [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004028350.1
COORDINATES: similar to AA sequence:RefSeq:WP_004028349.1
Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; incomplete; too short partial abutting assembly gap; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004027715.1
COORDINATES: similar to AA sequence:RefSeq:WP_004028822.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004027625.1
COORDINATES: similar to AA sequence:RefSeq:WP_004027624.1
glycerophosphodiester phosphodiesterase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004029170.1
GO:0004802 - transketolase activity [Evidence IEA]
GO:0006098 - pentose-phosphate shunt [Evidence IEA]
COORDINATES: protein motif:HMM:NF024698.2
COORDINATES: similar to AA sequence:RefSeq:WP_004028272.1
energy-coupled thiamine transporter ThiT
COORDINATES: nucleotide motif:Rfam:14.4:RF00059
TPP riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: protein motif:HMM:NF013621.2
GO:0000309 - nicotinamide-nucleotide adenylyltransferase activity [Evidence IEA]; GO:0004515 - nicotinate-nucleotide adenylyltransferase activity [Evidence IEA]
GO:0009435 - NAD biosynthetic process [Evidence IEA]
nicotinate (nicotinamide) nucleotide adenylyltransferase
COORDINATES: protein motif:HMM:TIGR00488.1
bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK
COORDINATES: similar to AA sequence:RefSeq:WP_004028268.1
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase
COORDINATES: protein motif:HMM:NF012576.2
LacI family DNA-binding transcriptional regulator
COORDINATES: protein motif:HMM:TIGR04570.1
GO:0008150 - biological_process [Evidence IEA]
COORDINATES: protein motif:HMM:NF014900.2
COORDINATES: protein motif:HMM:NF013397.2
formate/nitrite transporter family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004028535.1
ribosome biogenesis GTP-binding protein YihA/YsxC
COORDINATES: similar to AA sequence:RefSeq:WP_004028534.1
COORDINATES: similar to AA sequence:RefSeq:WP_004028533.1
COORDINATES: similar to AA sequence:RefSeq:WP_016341091.1
COORDINATES: protein motif:HMM:NF013696.2
COORDINATES: protein motif:HMM:NF015983.2
GO:0051989 - coproporphyrinogen dehydrogenase activity [Evidence IEA]
GO:0006779 - porphyrin-containing compound biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012235.2
ATP-binding cassette domain-containing protein
COORDINATES: protein motif:HMM:NF012512.2
COORDINATES: protein motif:HMM:NF013845.2
COORDINATES: protein motif:HMM:NF013873.2
COORDINATES: similar to AA sequence:RefSeq:WP_000226683.1
phosphate ABC transporter ATP-binding protein
COORDINATES: protein motif:HMM:NF019976.2
nuclease-related domain-containing protein
COORDINATES: protein motif:HMM:NF012388.2
COORDINATES: protein motif:HMM:NF024673.2
COORDINATES: similar to AA sequence:RefSeq:WP_004028058.1
COORDINATES: similar to AA sequence:RefSeq:WP_004028059.1
GO:0005886 - plasma membrane [Evidence IEA]
BMP family ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_004028061.1
COORDINATES: similar to AA sequence:RefSeq:WP_004028062.1
COORDINATES: similar to AA sequence:RefSeq:WP_004028063.1
COORDINATES: similar to AA sequence:RefSeq:WP_004028935.1
COORDINATES: similar to AA sequence:RefSeq:WP_004028066.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003899 - DNA-directed 5'-3' RNA polymerase activity [Evidence IEA]; GO:0032549 - ribonucleoside binding [Evidence IEA]
GO:0006351 - DNA-templated transcription [Evidence IEA]
DNA-directed RNA polymerase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_004028067.1
GO:0000345 - cytosolic DNA-directed RNA polymerase complex [Evidence IEA]
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity [Evidence IEA]
DNA-directed RNA polymerase subunit beta'
COORDINATES: similar to AA sequence:RefSeq:WP_016293564.1
COORDINATES: similar to AA sequence:RefSeq:WP_014035361.1
COORDINATES: similar to AA sequence:RefSeq:WP_004028937.1
GO:0003746 - translation elongation factor activity [Evidence IEA]
GO:0006414 - translational elongation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:YP_499102.1
COORDINATES: similar to AA sequence:RefSeq:WP_004028938.1
COORDINATES: similar to AA sequence:RefSeq:WP_016341149.1
COORDINATES: protein motif:HMM:NF014443.2
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: similar to AA sequence:RefSeq:WP_004027913.1
GO:0008808 - cardiolipin synthase activity [Evidence IEA]
GO:0032049 - cardiolipin biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004027912.1
COORDINATES: protein motif:HMM:NF015113.2
COORDINATES: protein motif:HMM:NF020742.2
COORDINATES: similar to AA sequence:RefSeq:WP_004027908.1
COORDINATES: similar to AA sequence:RefSeq:WP_004027907.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004027906.1
COORDINATES: similar to AA sequence:RefSeq:WP_004027905.1
GO:0005575 - cellular_component [Evidence IEA]
GO:0016740 - transferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF017181.2
COORDINATES: similar to AA sequence:RefSeq:WP_004027903.1
COORDINATES: similar to AA sequence:RefSeq:WP_004572330.1
COORDINATES: similar to AA sequence:RefSeq:WP_004572329.1
COORDINATES: similar to AA sequence:RefSeq:WP_004572327.1
COORDINATES: similar to AA sequence:RefSeq:WP_016339259.1
COORDINATES: similar to AA sequence:RefSeq:WP_004027897.1
GO:0004831 - tyrosine-tRNA ligase activity [Evidence IEA]
GO:0006437 - tyrosyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF015288.2
COORDINATES: similar to AA sequence:RefSeq:WP_004027776.1
methylated-DNA--[protein]-cysteine S-methyltransferase
COORDINATES: protein motif:HMM:NF012451.2
COORDINATES: similar to AA sequence:RefSeq:WP_004027779.1
COORDINATES: similar to AA sequence:RefSeq:WP_004027780.1
GO:0003951 - NAD+ kinase activity [Evidence IEA]
GO:0006741 - NADP biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016339269.1
COORDINATES: similar to AA sequence:RefSeq:WP_019235960.1
GO:0004823 - leucine-tRNA ligase activity [Evidence IEA]
GO:0006429 - leucyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004028864.1
COORDINATES: similar to AA sequence:RefSeq:WP_004027797.1
COORDINATES: similar to AA sequence:RefSeq:WP_004027799.1
GO:0015036 - disulfide oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004027782.1
GO:0034257 - nicotinamide riboside transmembrane transporter activity [Evidence IEA]
GO:0034258 - nicotinamide riboside transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF013232.2
COORDINATES: protein motif:HMM:NF013056.2
COORDINATES: similar to AA sequence:RefSeq:WP_016291667.1
COORDINATES: protein motif:HMM:NF012382.2
COORDINATES: protein motif:HMM:NF014368.2
GO:0022877 - protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity [Evidence IEA]
fructose-specific PTS transporter subunit EIIC
COORDINATES: protein motif:HMM:NF012579.2
COORDINATES: similar to AA sequence:RefSeq:WP_015979232.1
COORDINATES: similar to AA sequence:RefSeq:WP_004028304.1
GO:0004807 - triose-phosphate isomerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004028305.1
COORDINATES: similar to AA sequence:RefSeq:WP_004028306.1
COORDINATES: similar to AA sequence:RefSeq:WP_004028307.1
GO:0043937 - regulation of sporulation [Evidence IEA]
COORDINATES: protein motif:HMM:NF019155.2
COORDINATES: protein motif:HMM:NF012493.2
COORDINATES: protein motif:HMM:NF013229.2
COORDINATES: protein motif:HMM:NF019156.2
COORDINATES: protein motif:HMM:NF024804.2
GO:0043565 - sequence-specific DNA binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF014749.2
COORDINATES: protein motif:HMM:NF012412.2
COORDINATES: protein motif:HMM:NF024910.2
COORDINATES: protein motif:HMM:TIGR03380.1
GO:0047632 - agmatine deiminase activity [Evidence IEA]
GO:0009446 - putrescine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001036337.1
COORDINATES: similar to AA sequence:RefSeq:WP_004028310.1
GO:0004791 - thioredoxin-disulfide reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004028311.1
GO:0008961 - phosphatidylglycerol-prolipoprotein diacylglyceryl transferase activity [Evidence IEA]
GO:0042158 - lipoprotein biosynthetic process [Evidence IEA]
prolipoprotein diacylglyceryl transferase
COORDINATES: similar to AA sequence:RefSeq:WP_004028312.1
GO:0016791 - phosphatase activity [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016340397.1
GO:0009380 - excinuclease repair complex [Evidence IEA]
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004028318.1
COORDINATES: similar to AA sequence:RefSeq:WP_016340395.1
COORDINATES: similar to AA sequence:RefSeq:WP_016340394.1
GO:0004751 - ribose-5-phosphate isomerase activity [Evidence IEA]
GO:0009052 - pentose-phosphate shunt, non-oxidative branch [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004028322.1
COORDINATES: similar to AA sequence:RefSeq:WP_016338529.1
GO:0022627 - cytosolic small ribosomal subunit [Evidence IEA]; GO:0000312 - plastid small ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004029045.1
COORDINATES: protein motif:HMM:NF017911.2