Haladaptatus salinisoli strain PSR8 plasmid unnamed7, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Halobacteriales; Haladaptataceae; Haladaptatus.
Halophilic archaea isolated from solar salterns and salt lakes
Submitted (19-OCT-2021) School of Food and Biological Engineering, Jiangsu University, No 301 Xuefu Road, Jingkou District, Zhenjiang, Zhenjiang, Jiangsu 212013, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP085334.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 4\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 387.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 07/30/2023 12:33:03\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,188\nCDSs (total) :: 5,129\nGenes (coding) :: 5,050\nCDSs (with protein) :: 5,050\nGenes (RNA) :: 59\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 51\nncRNAs :: 2\nPseudo Genes (total) :: 79\nCDSs (without protein) :: 79\nPseudo Genes (ambiguous residues) :: 0 of 79\nPseudo Genes (frameshifted) :: 35 of 79\nPseudo Genes (incomplete) :: 59 of 79\nPseudo Genes (internal stop) :: 17 of 79\nPseudo Genes (multiple problems) :: 27 of 79\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: protein motif:HMM:NF013561.2
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_007273959.1
COORDINATES: similar to AA sequence:RefSeq:WP_007981519.1
COORDINATES: similar to AA sequence:RefSeq:WP_007110402.1
COORDINATES: protein motif:HMM:NF024627.2
right-handed parallel beta-helix repeat-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004958167.1