Haladaptatus salinisoli strain PSR8 plasmid unnamed5, complete sequence.
type: Entry
definition: Haladaptatus salinisoli strain PSR8 plasmid unnamed5, complete sequence.
sequence version: NZ_CP085332.1
sequence date: 2023-07-30
sequence: sequence
division: CON
label: NZ_CP085332.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN22363859
keyword: RefSeq
source: Haladaptatus salinisoli
organism: Haladaptatus salinisoli
taxonomy: Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Halobacteriales; Haladaptataceae; Haladaptatus.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP085332.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 4\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 387.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 07/30/2023 12:33:03\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,188\nCDSs (total) :: 5,129\nGenes (coding) :: 5,050\nCDSs (with protein) :: 5,050\nGenes (RNA) :: 59\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 51\nncRNAs :: 2\nPseudo Genes (total) :: 79\nCDSs (without protein) :: 79\nPseudo Genes (ambiguous residues) :: 0 of 79\nPseudo Genes (frameshifted) :: 35 of 79\nPseudo Genes (incomplete) :: 59 of 79\nPseudo Genes (internal stop) :: 17 of 79\nPseudo Genes (multiple problems) :: 27 of 79\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 14057
topology: circular
so has quality: SO_0000988
location: 1..14057
location: region:1-14057:1
RO_0002162: 2884876

NZ_CP085332
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN22363859
type: BioSample
SIO_000068: biosample

1
title: Halophilic archaea isolated from solar salterns and salt lakes
author: Cui, H.-L.
journal: Unpublished

2
title: Direct Submission
author: Cui, H.-L.
journal: Submitted (19-OCT-2021) School of Food and Biological Engineering, Jiangsu University, No 301 Xuefu Road, Jingkou District, Zhenjiang, Zhenjiang, Jiangsu 212013, China

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14057:1
position: 14057
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-14057:1:source
so part of: sequence
organism: Haladaptatus salinisoli
mol type: genomic DNA
strain: PSR8
isolation source: saline soil
type material: type strain of Haladaptatus salinisoli
plasmid: unnamed5
country: China: Xinjiang
collection date: 2018-05

2884876
type: Taxonomy
SIO_000068: taxonomy

LIX00_RS24220
type: Gene
subclass of: SO_0000704
RO_0002162: 2884876
locus tag: LIX00_RS24220
so part of: sequence
location: 176..376
location: region:176-376:1
so has part: feature:176-376:1:exon
subclass of: SO_0000010

68579138
type: Gene
SIO_000068: ncbigene

position:176:1
position: 176
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:376:1
position: 376
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:176-376:1:exon

LIX00_RS24220
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2884876
locus tag: LIX00_RS24220
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSVERFCRLGVLQGLVDDVPGEHREEFRALAMQYLDAKIERVSRPALRAIFGLILRQHYSERGACV
SIO_010081: LIX00_RS24220
subclass of: SO_0000673
so part of: LIX00_RS24220
location: 176..376
location: region:176-376:1
so has part: feature:176-376:1:exon

WP_227357388.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:176-376:1:exon

LIX00_RS24225
type: Gene
subclass of: SO_0000704
RO_0002162: 2884876
locus tag: LIX00_RS24225
so part of: sequence
location: 373..882
location: region:373-882:1
so has part: feature:373-882:1:exon
subclass of: SO_0000010

68579139
type: Gene
SIO_000068: ncbigene

position:373:1
position: 373
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:882:1
position: 882
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:373-882:1:exon

LIX00_RS24225
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2884876
locus tag: LIX00_RS24225
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSDRRPQTDDESCGAETDAGTPCQLDATRDDGRCHHHTDEDEKKAGRPTKLTYERQERIAAALEAGVPVKHAAPANGITEDTFYRWARRGEEQEEGEFSEFSERVTRARGVGKADLSRHVVEIAKEKGDARTLLRYLQYIDGGEETQDDENHAGLNLVVPEIAQRGDAE
SIO_010081: LIX00_RS24225
subclass of: SO_0000673
so part of: LIX00_RS24225
location: 373..882
location: region:373-882:1
so has part: feature:373-882:1:exon

WP_227357389.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:373-882:1:exon

LIX00_RS24230
type: Gene
subclass of: SO_0000704
RO_0002162: 2884876
locus tag: LIX00_RS24230
so part of: sequence
location: 1107..1298
location: region:1107-1298:1
so has part: feature:1107-1298:1:exon
subclass of: SO_0000010

68579140
type: Gene
SIO_000068: ncbigene

position:1107:1
position: 1107
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1298:1
position: 1298
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1107-1298:1:exon

LIX00_RS24230
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2884876
locus tag: LIX00_RS24230
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSNASKWLTAIQNGAYRVATSDSDLPETAEKVGEMGGYNVYETDDGPLLKQRGHGQSNGEGEI
SIO_010081: LIX00_RS24230
subclass of: SO_0000673
so part of: LIX00_RS24230
location: 1107..1298
location: region:1107-1298:1
so has part: feature:1107-1298:1:exon

WP_227357390.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1107-1298:1:exon

LIX00_RS24235
type: Gene
subclass of: SO_0000704
RO_0002162: 2884876
locus tag: LIX00_RS24235
so part of: sequence
location: 1295..1885
location: region:1295-1885:1
so has part: feature:1295-1885:1:exon
subclass of: SO_0000010

68579141
type: Gene
SIO_000068: ncbigene

position:1295:1
position: 1295
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1885:1
position: 1885
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1295-1885:1:exon

LIX00_RS24235
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2884876
locus tag: LIX00_RS24235
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTNNSGFAVVAMSKSNSIKQRFRDIVEQHGSKSDDSVEQKSDWRDDAKGRDFAGSHTIDLSHLDDGETSTATSDADVTMGAGELQKQLQGVQRRQGSIRRTGNPIVGGVEEKAASAEQAPTPGAVPDSEGGSGDDGEGSDRDVSTDDLLAGAAESMQSMYGAYQEFHAAVDALTDAGMSPEEINAGVIERLDTEEN
SIO_010081: LIX00_RS24235
subclass of: SO_0000673
so part of: LIX00_RS24235
location: 1295..1885
location: region:1295-1885:1
so has part: feature:1295-1885:1:exon

WP_227357391.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1295-1885:1:exon

LIX00_RS24240
type: Gene
subclass of: SO_0000704
RO_0002162: 2884876
locus tag: LIX00_RS24240
so part of: sequence
location: 1885..2205
location: region:1885-2205:1
so has part: feature:1885-2205:1:exon
subclass of: SO_0000010

68579142
type: Gene
SIO_000068: ncbigene

position:2205:1
position: 2205
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1885-2205:1:exon

LIX00_RS24240
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2884876
locus tag: LIX00_RS24240
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTHNTTIVQEENSAVYKVVVRLDVTALDAAGVEQFDPTTETDDTRNKTLLEHSPLTAVNVLEWEDETSLVMWDTVDEELKVKALADGTDVASGTALGEVLVEVRGE
SIO_010081: LIX00_RS24240
subclass of: SO_0000673
so part of: LIX00_RS24240
location: 1885..2205
location: region:1885-2205:1
so has part: feature:1885-2205:1:exon

WP_227357392.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1885-2205:1:exon

LIX00_RS24245
type: Gene
subclass of: SO_0000704
RO_0002162: 2884876
locus tag: LIX00_RS24245
so part of: sequence
location: 2209..2865
location: region:2209-2865:1
so has part: feature:2209-2865:1:exon
subclass of: SO_0000010

68579143
type: Gene
SIO_000068: ncbigene

position:2209:1
position: 2209
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2865:1
position: 2865
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2209-2865:1:exon

LIX00_RS24245
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2884876
locus tag: LIX00_RS24245
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLYYVDRDLEDAAKGETELSLVTVSYEGEHSALPTKGALQDQGYLRVLTPLVSGQQYPTLVRDEGLGYLESNQEVAVSYRPEDVARTWLNSNYLPPAVFGQSADKRVQDLVFDALDIEWRGMNNEGGNREELYAVLGEEMPDSEYEDDPHPSRVQELLDYTRSQLQAVAPQFDKSADDVATAGKQELAYHLAEYNRSRVLSELESETDAETADTEGVA
SIO_010081: LIX00_RS24245
subclass of: SO_0000673
so part of: LIX00_RS24245
location: 2209..2865
location: region:2209-2865:1
so has part: feature:2209-2865:1:exon

WP_227357393.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2209-2865:1:exon

LIX00_RS24250
type: Gene
subclass of: SO_0000704
RO_0002162: 2884876
locus tag: LIX00_RS24250
so part of: sequence
location: 2865..3074
location: region:2865-3074:1
so has part: feature:2865-3074:1:exon
subclass of: SO_0000010

68579144
type: Gene
SIO_000068: ncbigene

position:3074:1
position: 3074
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2865-3074:1:exon

LIX00_RS24250
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2884876
locus tag: LIX00_RS24250
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSSTFDLSGATYRYRTPDGEESELDADTIRLSANFVVVSTNEDGDLTMAADPTTHERIVRVDDTEGVAV
SIO_010081: LIX00_RS24250
subclass of: SO_0000673
so part of: LIX00_RS24250
location: 2865..3074
location: region:2865-3074:1
so has part: feature:2865-3074:1:exon

WP_227357394.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2865-3074:1:exon

LIX00_RS24255
type: Gene
subclass of: SO_0000704
RO_0002162: 2884876
locus tag: LIX00_RS24255
so part of: sequence
location: 3074..3226
location: region:3074-3226:1
so has part: feature:3074-3226:1:exon
subclass of: SO_0000010

68579145
type: Gene
SIO_000068: ncbigene

position:3226:1
position: 3226
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3074-3226:1:exon

LIX00_RS24255
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2884876
locus tag: LIX00_RS24255
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPFDATRVKNNPGEIQQHFTDFAAGVTSVDSWMVHEEGRGYVIVTIEYTA
SIO_010081: LIX00_RS24255
subclass of: SO_0000673
so part of: LIX00_RS24255
location: 3074..3226
location: region:3074-3226:1
so has part: feature:3074-3226:1:exon

WP_227357395.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3074-3226:1:exon

LIX00_RS24260
type: Gene
subclass of: SO_0000704
RO_0002162: 2884876
locus tag: LIX00_RS24260
so part of: sequence
location: 3228..3803
location: region:3228-3803:1
so has part: feature:3228-3803:1:exon
subclass of: SO_0000010

68579146
type: Gene
SIO_000068: ncbigene

position:3228:1
position: 3228
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3803:1
position: 3803
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3228-3803:1:exon

LIX00_RS24260
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2884876
locus tag: LIX00_RS24260
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MADHPREDDRVLACAHSIDTKPHSDTPSQGIVMWGLEPRVEDGKIALSGGYAILFGEHGVYHTFVAPRRPTYIPAVEGGRTVIFLQVNPNVPHSLTFNATTTSRDEGEGGTVRTTYPQLKIAAIDCRESMADPPVSLYNRDSESVPEGTPLSFAPRGAVAPHRRLRQIDSPSVVGFQWGSDASDSTSSFEN
SIO_010081: LIX00_RS24260
subclass of: SO_0000673
so part of: LIX00_RS24260
location: 3228..3803
location: region:3228-3803:1
so has part: feature:3228-3803:1:exon

WP_227357396.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3228-3803:1:exon

LIX00_RS24265
type: Gene
subclass of: SO_0000704
RO_0002162: 2884876
locus tag: LIX00_RS24265
so part of: sequence
location: 3811..5415
location: region:3811-5415:1
so has part: feature:3811-5415:1:exon
subclass of: SO_0000010

68579147
type: Gene
SIO_000068: ncbigene

position:3811:1
position: 3811
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5415:1
position: 5415
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3811-5415:1:exon

LIX00_RS24265
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2884876
locus tag: LIX00_RS24265
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAITEKNVTFQSNDDLNEDNLRKLVRVLTDGSGNGFVHRGFRMTADHTNNNITVDDGHALIVDDTGDGAYTAEHPGVTDASIDSTTVNYLFLTIDPTVNNDVTIEINTSDMPARTPALKIGEVDAASSAEPVETNHGRSGKFESLIVEDSITDPAGVEHTGELADTADLSNYSPTTHDHAGDDLGADSPVNSVAANSATVGEFNGTVYAEPGEVQSAIDTAYAAGGGVVYLHPGHSYSSSGEGGEVHIKKNVYLFAPGVTYTIDTDVNGFFVDNQAKLWGYPDIQCTLGDSYTSVAVLFDQGRCEDGTYGYGPDSRNPASVAANIESTGRGGAGMKWICVDGGIAFTQSDVCVRNFSSCLEFDANDYHINANQINGTFSGATNIIRNIGGICRSKISGVIQCATGGPTDRVFWNEDMAGNLAFTYVGDVWDPYGTSVSSVEGNDMTIITNYQNAYAVIAHVDTSLDAPRSKVYGFGDSMRYGVCETGEMWEHNYYWGGWDVHHYDSSMTKTQKMRFLPDGELRVDGPVNGNYTF
SIO_010081: LIX00_RS24265
subclass of: SO_0000673
so part of: LIX00_RS24265
location: 3811..5415
location: region:3811-5415:1
so has part: feature:3811-5415:1:exon

WP_227357397.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3811-5415:1:exon

LIX00_RS24270
type: Gene
subclass of: SO_0000704
RO_0002162: 2884876
locus tag: LIX00_RS24270
so part of: sequence
location: 5512..5733
location: region:5512-5733:1
so has part: feature:5512-5733:1:exon
subclass of: SO_0000010

68579148
type: Gene
SIO_000068: ncbigene

position:5512:1
position: 5512
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5733:1
position: 5733
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5512-5733:1:exon

LIX00_RS24270
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2884876
locus tag: LIX00_RS24270
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPDTTPTDAVVEDILTLDSLSNHGSRADCLLALAYIEHEKSGRDRPFPEQARITSSHLERKNIPQQIRDRQEE
SIO_010081: LIX00_RS24270
subclass of: SO_0000673
so part of: LIX00_RS24270
location: 5512..5733
location: region:5512-5733:1
so has part: feature:5512-5733:1:exon

WP_227357398.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5512-5733:1:exon

LIX00_RS24275
type: Gene
subclass of: SO_0000704
RO_0002162: 2884876
locus tag: LIX00_RS24275
so part of: sequence
location: complement(6196..6375)
location: region:6196-6375:-1
so has part: feature:6196-6375:-1:exon
subclass of: SO_0000010

68579149
type: Gene
SIO_000068: ncbigene

position:6196:-1
position: 6196
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6375:-1
position: 6375
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6196-6375:-1:exon

LIX00_RS24275
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2884876
locus tag: LIX00_RS24275
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSDEEHRGWLCPVCGDLIKAAVVTDPQTATLAPCGHNIAADHPILSSDQLVETREEDDR
SIO_010081: LIX00_RS24275
subclass of: SO_0000673
so part of: LIX00_RS24275
location: complement(6196..6375)
location: region:6196-6375:-1
so has part: feature:6196-6375:-1:exon

WP_227357399.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6196-6375:-1:exon

LIX00_RS24280
type: Gene
subclass of: SO_0000704
RO_0002162: 2884876
locus tag: LIX00_RS24280
so part of: sequence
location: complement(6368..6700)
location: region:6368-6700:-1
so has part: feature:6368-6700:-1:exon
subclass of: SO_0000010

68579150
type: Gene
SIO_000068: ncbigene

position:6368:-1
position: 6368
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6700:-1
position: 6700
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6368-6700:-1:exon

LIX00_RS24280
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2884876
locus tag: LIX00_RS24280
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSAYNPAVQEPNELQANQTRVGEMLIVECAPDVYNVINESYDDPKEHTYTVTDGRCTCPQFKYRCADTGRTCKHQDAVESAKECDCDVLWEKHGVPCWPCYQSGKEFDDE
SIO_010081: LIX00_RS24280
subclass of: SO_0000673
so part of: LIX00_RS24280
location: complement(6368..6700)
location: region:6368-6700:-1
so has part: feature:6368-6700:-1:exon

WP_227357400.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6368-6700:-1:exon

LIX00_RS24285
type: Gene
subclass of: SO_0000704
RO_0002162: 2884876
locus tag: LIX00_RS24285
so part of: sequence
location: 6888..7103
location: region:6888-7103:1
so has part: feature:6888-7103:1:exon
subclass of: SO_0000010

68579151
type: Gene
SIO_000068: ncbigene

position:6888:1
position: 6888
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7103:1
position: 7103
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6888-7103:1:exon

LIX00_RS24285
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2884876
locus tag: LIX00_RS24285
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008456335.1
GO function: GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MarR family transcriptional regulator
translation: MKEDIDLNPTDNAILDRLHEGRASPSYIAQKDDYSRQNITNRLGRLVEHGYVEKLAPGLYELVYDPRGEDE
SIO_010081: LIX00_RS24285
subclass of: SO_0000673
so part of: LIX00_RS24285
location: 6888..7103
location: region:6888-7103:1
so has part: feature:6888-7103:1:exon

WP_227357401.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6888-7103:1:exon

LIX00_RS24290
type: Gene
subclass of: SO_0000704
RO_0002162: 2884876
locus tag: LIX00_RS24290
so part of: sequence
location: 7100..7525
location: region:7100-7525:1
so has part: feature:7100-7525:1:exon
subclass of: SO_0000010

68579152
type: Gene
SIO_000068: ncbigene

position:7100:1
position: 7100
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7525:1
position: 7525
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7100-7525:1:exon

LIX00_RS24290
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2884876
locus tag: LIX00_RS24290
inference: COORDINATES: protein motif:HMM:NF024212.2
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
translation: MTECDLNPTDHAILNRLHKGRASPAYIARKEDYSAPNVTTRLSRLVEHGYVARVSRGLYELVEDPRDARTTDVAPWRHEKTLRYLYTEKGYSQKEIADLLGCYKPTIVEWMQIHNIETRTNLKFSPDELEKARAALPERGT
SIO_010081: LIX00_RS24290
subclass of: SO_0000673
so part of: LIX00_RS24290
location: 7100..7525
location: region:7100-7525:1
so has part: feature:7100-7525:1:exon

WP_227357378.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7100-7525:1:exon

LIX00_RS24295
type: Gene
subclass of: SO_0000704
RO_0002162: 2884876
locus tag: LIX00_RS24295
so part of: sequence
location: 7522..8976
location: region:7522-8976:1
so has part: feature:7522-8976:1:exon
subclass of: SO_0000010

68579153
type: Gene
SIO_000068: ncbigene

position:7522:1
position: 7522
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8976:1
position: 8976
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7522-8976:1:exon

LIX00_RS24295
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2884876
locus tag: LIX00_RS24295
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRTRVLALTLLFLVLVSPIAGLAVAQSTTTTTTTPNATTATENATGNNSTANRTVSPRPTVDPYGQGYLNKTGRYGNNSTLGVYNNSTGMQEGGGGMFYNAILDGWLAIVGHMVGALLTFVDTLLDIIIKMVTVTPAPEWGGGWYQSPDNGIWPQRYADWTERAQPWTLFVCIMSTGIYLAFGHRGMGLLPARYERQGAKNLIIAWVAGLWGWQLVGFILNIANALSFGIAQSVTDPTLLTSGLKGIMAIALVLTLFWNAWILLVVVSLVGIRYLGLTALTPWIPFLIALRAVPFRPLSMIGDGLTKLWAVLALVTLPVSIALSVGFSPVTADIYRMNGMQGIQIMVLQLATAIGCLVFPYFMFQKGGKVLGGVGVAGAAPTADGMRESYQNQRQRASELKESTKQTARRGQDLHRGLRGTDAAHGTDTYLTGQAGRQTVQTYTSPIKERISSIRGDSTTTDAELQHLRDQRIKDLKANHDSNE
SIO_010081: LIX00_RS24295
subclass of: SO_0000673
so part of: LIX00_RS24295
location: 7522..8976
location: region:7522-8976:1
so has part: feature:7522-8976:1:exon

WP_227357379.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7522-8976:1:exon

LIX00_RS24300
type: Gene
subclass of: SO_0000704
RO_0002162: 2884876
locus tag: LIX00_RS24300
so part of: sequence
location: 8969..9178
location: region:8969-9178:1
so has part: feature:8969-9178:1:exon
subclass of: SO_0000010

68579154
type: Gene
SIO_000068: ncbigene

position:8969:1
position: 8969
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9178:1
position: 9178
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8969-9178:1:exon

LIX00_RS24300
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2884876
locus tag: LIX00_RS24300
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNEITDVEGEPTTERGGSGLWWRFKKGMLTLILLSVVFVALRGGVGDVGALAVAIVVSVFGGHFVYGDG
SIO_010081: LIX00_RS24300
subclass of: SO_0000673
so part of: LIX00_RS24300
location: 8969..9178
location: region:8969-9178:1
so has part: feature:8969-9178:1:exon

WP_227357380.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8969-9178:1:exon

LIX00_RS24305
type: Gene
subclass of: SO_0000704
RO_0002162: 2884876
locus tag: LIX00_RS24305
so part of: sequence
location: complement(10390..10749)
location: region:10390-10749:-1
so has part: feature:10390-10749:-1:exon
subclass of: SO_0000010

68579155
type: Gene
SIO_000068: ncbigene

position:10390:-1
position: 10390
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10749:-1
position: 10749
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10390-10749:-1:exon

LIX00_RS24305
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2884876
locus tag: LIX00_RS24305
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTRYAFTADSEHEEIIEHEEDTGNHDSTASAIRACIARSAELQQECDELEAHVEELQRERDERVAELQQTVERLEREKRMIIEQRDETETLQRYVEEEQTFRRASLGTRLRWWIFGMDD
SIO_010081: LIX00_RS24305
subclass of: SO_0000673
so part of: LIX00_RS24305
location: complement(10390..10749)
location: region:10390-10749:-1
so has part: feature:10390-10749:-1:exon

WP_227357381.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10390-10749:-1:exon

LIX00_RS24310
type: Gene
subclass of: SO_0000704
RO_0002162: 2884876
locus tag: LIX00_RS24310
so part of: sequence
location: complement(10787..11617)
location: region:10787-11617:-1
so has part: feature:10787-11617:-1:exon
subclass of: SO_0000010

68579156
type: Gene
SIO_000068: ncbigene

position:10787:-1
position: 10787
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11617:-1
position: 11617
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10787-11617:-1:exon

LIX00_RS24310
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2884876
locus tag: LIX00_RS24310
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MVHDNPPASPERGRGFLTQHDKDYLLGEAGVEDGSQQERNVRAKIRQRLYDSILDFALLLRHVGERDIDLVFHDRDPEEDYLEEGLAHLLGFVYYADPDRFGARLEEGIEYATMRDGWLADVDVNIDIDRTRNMTDVIEDIESSGEYYTNEQKLLRARGRFNVGTQIHFDHVLGDRDGVPDDIDDPRLAIEYLSLPFGDPNERAEARQAVRVALDHLDRLRDEDDLTPDEIAEKIASTVYEIYPLRYESSLALWQNLLEPSFNEIGAEIPDRQPDV
SIO_010081: LIX00_RS24310
subclass of: SO_0000673
so part of: LIX00_RS24310
location: complement(10787..11617)
location: region:10787-11617:-1
so has part: feature:10787-11617:-1:exon

WP_227357382.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10787-11617:-1:exon

LIX00_RS24315
type: Gene
subclass of: SO_0000704
RO_0002162: 2884876
locus tag: LIX00_RS24315
so part of: sequence
location: 11686..11823
location: region:11686-11823:1
so has part: feature:11686-11823:1:exon
subclass of: SO_0000010

68579157
type: Gene
SIO_000068: ncbigene

position:11686:1
position: 11686
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11823:1
position: 11823
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11686-11823:1:exon

LIX00_RS24315
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2884876
locus tag: LIX00_RS24315
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MADFTNVPARPDTKQRIADLRFDMRVNSMDAVLRELLETYDQKNA
SIO_010081: LIX00_RS24315
subclass of: SO_0000673
so part of: LIX00_RS24315
location: 11686..11823
location: region:11686-11823:1
so has part: feature:11686-11823:1:exon

WP_227357383.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11686-11823:1:exon

LIX00_RS24320
type: Gene
subclass of: SO_0000704
RO_0002162: 2884876
locus tag: LIX00_RS24320
so part of: sequence
location: 12112..12345
location: region:12112-12345:1
so has part: feature:12112-12345:1:exon
subclass of: SO_0000010

68579158
type: Gene
SIO_000068: ncbigene

position:12112:1
position: 12112
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12345:1
position: 12345
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12112-12345:1:exon

LIX00_RS24320
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2884876
locus tag: LIX00_RS24320
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSTHNDTDNDSTETGLATELDRIDGNVNGLYALFSDLKDRVAKLEDENERQRMMIQSLRTQTSTPDGEMATDGGVDE
SIO_010081: LIX00_RS24320
subclass of: SO_0000673
so part of: LIX00_RS24320
location: 12112..12345
location: region:12112-12345:1
so has part: feature:12112-12345:1:exon

WP_227357384.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12112-12345:1:exon

LIX00_RS24325
type: Gene
subclass of: SO_0000704
RO_0002162: 2884876
locus tag: LIX00_RS24325
so part of: sequence
location: 12342..12647
location: region:12342-12647:1
so has part: feature:12342-12647:1:exon
subclass of: SO_0000010

68579159
type: Gene
SIO_000068: ncbigene

position:12342:1
position: 12342
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12647:1
position: 12647
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12342-12647:1:exon

LIX00_RS24325
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2884876
locus tag: LIX00_RS24325
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSDENNDRRNTTAIVNLIDRDRNINDGGFFESFELVNGAPIPRKGEYVATSKGTFEVVTVLHDGYGSGGFVHAPEVLLEVRVLDGEDPFAAAEDGNGGVAE
SIO_010081: LIX00_RS24325
subclass of: SO_0000673
so part of: LIX00_RS24325
location: 12342..12647
location: region:12342-12647:1
so has part: feature:12342-12647:1:exon

WP_227357385.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12342-12647:1:exon

LIX00_RS24330
type: Gene
subclass of: SO_0000704
RO_0002162: 2884876
locus tag: LIX00_RS24330
so part of: sequence
location: 12644..13141
location: region:12644-13141:1
so has part: feature:12644-13141:1:exon
subclass of: SO_0000010

68579160
type: Gene
SIO_000068: ncbigene

position:12644:1
position: 12644
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13141:1
position: 13141
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12644-13141:1:exon

LIX00_RS24330
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2884876
locus tag: LIX00_RS24330
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTSRISATVEDRVKEKLDNLTHVNNSALINDLLEAYLFGGDDPMSMTTEQAALKHEKKKLQHELEEEKETLERKQNRLQEVLDDLKELEEKGRPEDLVESFETLNRVNGSLDVSNPAVQTHAGKRGMDPEKFLGEFREWREEEGHADHPSTRLKSTTVQETTADD
SIO_010081: LIX00_RS24330
subclass of: SO_0000673
so part of: LIX00_RS24330
location: 12644..13141
location: region:12644-13141:1
so has part: feature:12644-13141:1:exon

WP_227357386.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12644-13141:1:exon

LIX00_RS24335
type: Gene
subclass of: SO_0000704
RO_0002162: 2884876
locus tag: LIX00_RS24335
so part of: sequence
location: complement(13393..13851)
location: region:13393-13851:-1
so has part: feature:13393-13851:-1:exon
subclass of: SO_0000010

68579161
type: Gene
SIO_000068: ncbigene

position:13393:-1
position: 13393
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13851:-1
position: 13851
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13393-13851:-1:exon

LIX00_RS24335
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2884876
locus tag: LIX00_RS24335
inference: COORDINATES: protein motif:HMM:NF016606.2
GO component: GO:0019867 - outer membrane [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: LPP leucine zipper domain-containing protein
translation: MQQPESWDALLDELRGNRAELLFSLNDNYPAETPKRELNGVCKSVNYHLNILLDWSLVEVVAHEHQGERIPERIFKLTPRGHNAVEELLEREDARPIPSAVEQHISDLRREIEELHEEVRETRDEAQTAHEEAKDANGRLNNLLEWLDENYR
SIO_010081: LIX00_RS24335
subclass of: SO_0000673
so part of: LIX00_RS24335
location: complement(13393..13851)
location: region:13393-13851:-1
so has part: feature:13393-13851:-1:exon

WP_227357387.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13393-13851:-1:exon