Haladaptatus salinisoli strain PSR8 plasmid unnamed4, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Halobacteriales; Haladaptataceae; Haladaptatus.
Halophilic archaea isolated from solar salterns and salt lakes
Submitted (19-OCT-2021) School of Food and Biological Engineering, Jiangsu University, No 301 Xuefu Road, Jingkou District, Zhenjiang, Zhenjiang, Jiangsu 212013, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP085331.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 4\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 387.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 07/30/2023 12:33:03\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,188\nCDSs (total) :: 5,129\nGenes (coding) :: 5,050\nCDSs (with protein) :: 5,050\nGenes (RNA) :: 59\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 51\nncRNAs :: 2\nPseudo Genes (total) :: 79\nCDSs (without protein) :: 79\nPseudo Genes (ambiguous residues) :: 0 of 79\nPseudo Genes (frameshifted) :: 35 of 79\nPseudo Genes (incomplete) :: 59 of 79\nPseudo Genes (internal stop) :: 17 of 79\nPseudo Genes (multiple problems) :: 27 of 79\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_007992852.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_007992857.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009488198.1
COORDINATES: similar to AA sequence:RefSeq:WP_007981361.1
COORDINATES: similar to AA sequence:RefSeq:WP_007975914.1
COORDINATES: similar to AA sequence:RefSeq:WP_007975915.1
COORDINATES: similar to AA sequence:RefSeq:WP_008414734.1
GO:0004455 - ketol-acid reductoisomerase activity [Evidence IEA]
GO:0009097 - isoleucine biosynthetic process [Evidence IEA]; GO:0009099 - valine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004516399.1
COORDINATES: protein motif:HMM:NF036897.2
COORDINATES: similar to AA sequence:RefSeq:WP_006110572.1
COORDINATES: similar to AA sequence:RefSeq:WP_015790189.1
COORDINATES: similar to AA sequence:RefSeq:WP_014051965.1
COORDINATES: similar to AA sequence:RefSeq:WP_007975929.1
COORDINATES: similar to AA sequence:RefSeq:WP_007975931.1
COORDINATES: similar to AA sequence:RefSeq:WP_007975933.1
COORDINATES: similar to AA sequence:RefSeq:WP_006112733.1
COORDINATES: protein motif:HMM:NF024986.2
COORDINATES: similar to AA sequence:RefSeq:WP_008526083.1
COORDINATES: similar to AA sequence:RefSeq:WP_006181067.1
COORDINATES: similar to AA sequence:RefSeq:WP_006181064.1
COORDINATES: similar to AA sequence:RefSeq:WP_008322086.1
COORDINATES: similar to AA sequence:RefSeq:WP_005558543.1
COORDINATES: protein motif:HMM:NF024976.2
type I restriction enzyme HsdR N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF021997.2
twin-arginine translocation signal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007983063.1
COORDINATES: similar to AA sequence:RefSeq:WP_007981536.1
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007981519.1
COORDINATES: similar to AA sequence:RefSeq:WP_008413908.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006654812.1
COORDINATES: similar to AA sequence:RefSeq:WP_012289756.1
COORDINATES: protein motif:HMM:NF024753.2
PQQ-binding-like beta-propeller repeat protein
COORDINATES: similar to AA sequence:RefSeq:WP_007979292.1
COORDINATES: similar to AA sequence:RefSeq:WP_007979290.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945085.1
COORDINATES: similar to AA sequence:RefSeq:WP_007979463.1
COORDINATES: protein motif:HMM:NF039368.1
COORDINATES: similar to AA sequence:RefSeq:WP_008847578.1
COORDINATES: protein motif:HMM:NF020177.2
COORDINATES: protein motif:HMM:NF021897.2
type IV secretion system DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007981003.1
putative phosphoglycerol geranylgeranyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_004056114.1
COORDINATES: similar to AA sequence:RefSeq:WP_007979268.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006181500.1
COORDINATES: similar to AA sequence:RefSeq:WP_007979287.1
COORDINATES: similar to AA sequence:RefSeq:WP_020222877.1
COORDINATES: similar to AA sequence:RefSeq:WP_006092622.1
COORDINATES: similar to AA sequence:RefSeq:WP_008894081.1
Lrp/AsnC family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_007188057.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006653633.1
COORDINATES: protein motif:HMM:NF027245.2
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007978070.1
COORDINATES: similar to AA sequence:RefSeq:WP_005041859.1
COORDINATES: similar to AA sequence:RefSeq:WP_008422412.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]
GO:0016310 - phosphorylation [Evidence IEA]
PEP/pyruvate-binding domain-containing protein
COORDINATES: protein motif:HMM:NF006153.0
GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]
COORDINATES: protein motif:HMM:NF012514.2
GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008422405.1
GO:0019439 - aromatic compound catabolic process [Evidence IEA]; GO:0006725 - cellular aromatic compound metabolic process [Evidence IEA]
aromatic-ring-hydroxylating dioxygenase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_008422403.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF012398.2
GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008422397.1
COORDINATES: similar to AA sequence:RefSeq:WP_007260838.1
GO:0046872 - metal ion binding [Evidence IEA]; GO:0042578 - phosphoric ester hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013757.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008387613.1
COORDINATES: similar to AA sequence:RefSeq:WP_004043357.1
COORDINATES: similar to AA sequence:RefSeq:WP_008422422.1
GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007260873.1
COORDINATES: similar to AA sequence:RefSeq:WP_007274069.1
COORDINATES: similar to AA sequence:RefSeq:WP_007274070.1
GO:0032559 - adenyl ribonucleotide binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006433156.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]
FAD-binding and (Fe-S)-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008388533.1
COORDINATES: similar to AA sequence:RefSeq:WP_004967944.1
COORDINATES: similar to AA sequence:RefSeq:WP_004043353.1
GO:0003824 - catalytic activity [Evidence IEA]
fumarylacetoacetate hydrolase family protein
COORDINATES: protein motif:HMM:NF013007.2
COORDINATES: similar to AA sequence:RefSeq:WP_012945271.1
COORDINATES: similar to AA sequence:RefSeq:WP_007261450.1
COORDINATES: similar to AA sequence:RefSeq:WP_008310844.1
COORDINATES: similar to AA sequence:RefSeq:WP_006107200.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183946.1
3-hydroxyacyl-CoA dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008324724.1
COORDINATES: similar to AA sequence:RefSeq:WP_008413979.1
GO:0016405 - CoA-ligase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004967937.1
COORDINATES: similar to AA sequence:RefSeq:WP_015320041.1
GO:0016831 - carboxy-lyase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF014079.2
COORDINATES: protein motif:HMM:NF012955.2
COORDINATES: similar to AA sequence:RefSeq:WP_008426927.1
COORDINATES: similar to AA sequence:RefSeq:WP_004048388.1
COORDINATES: similar to AA sequence:RefSeq:WP_004040863.1
COORDINATES: similar to AA sequence:RefSeq:WP_015320071.1
GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008413988.1
enoyl-CoA hydratase/isomerase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004967931.1
pyridoxamine 5'-phosphate oxidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008413986.1
GO:0010124 - phenylacetate catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004048432.1
phenylacetic acid degradation PaaB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004967926.1
COORDINATES: similar to AA sequence:RefSeq:WP_008413982.1
COORDINATES: similar to AA sequence:RefSeq:WP_008413981.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012945242.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
2Fe-2S iron-sulfur cluster-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_015301708.1
COORDINATES: similar to AA sequence:RefSeq:WP_020876819.1
GO:0008410 - CoA-transferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013323.2
COORDINATES: similar to AA sequence:RefSeq:WP_005558117.1
COORDINATES: similar to AA sequence:RefSeq:WP_015320061.1
COORDINATES: protein motif:HMM:NF013358.2
COORDINATES: similar to AA sequence:RefSeq:WP_008006350.1
COORDINATES: similar to AA sequence:RefSeq:WP_007276337.1
MaoC/PaaZ C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008896555.1
COORDINATES: protein motif:HMM:NF013080.2
COORDINATES: protein motif:HMM:NF024214.2
NTP transferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012945777.1
COORDINATES: similar to AA sequence:RefSeq:WP_008415533.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF024808.2
PotD/PotF family extracellular solute-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_006653048.1
COORDINATES: similar to AA sequence:RefSeq:WP_006108903.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004965971.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006826099.1
COORDINATES: similar to AA sequence:RefSeq:WP_006432997.1
COORDINATES: similar to AA sequence:RefSeq:WP_007691994.1
putative sulfate exporter family transporter
COORDINATES: similar to AA sequence:RefSeq:WP_007982961.1
COORDINATES: similar to AA sequence:RefSeq:WP_015310230.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183552.1
COORDINATES: similar to AA sequence:RefSeq:WP_007979040.1
orc1/cdc6 family replication initiation protein
COORDINATES: similar to AA sequence:RefSeq:WP_008390423.1
COORDINATES: similar to AA sequence:RefSeq:WP_008421050.1
COORDINATES: similar to AA sequence:RefSeq:WP_007978084.1
COORDINATES: similar to AA sequence:RefSeq:WP_013199690.1
COORDINATES: similar to AA sequence:RefSeq:WP_008413685.1
COORDINATES: similar to AA sequence:RefSeq:WP_006182323.1
GO:0016639 - oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004599328.1
rubrerythrin-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009367799.1
bacterio-opsin activator domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006184805.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013879483.1
COORDINATES: similar to AA sequence:RefSeq:WP_004516198.1
TFIIB-type zinc ribbon-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007741681.1
COORDINATES: similar to AA sequence:RefSeq:WP_015322754.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF008865.0
GO:0004664 - prephenate dehydratase activity [Evidence IEA]
GO:0009094 - L-phenylalanine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014865851.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004043411.1
COORDINATES: similar to AA sequence:RefSeq:WP_008526388.1
COORDINATES: similar to AA sequence:RefSeq:WP_006667272.1
COORDINATES: similar to AA sequence:RefSeq:WP_006667271.1
COORDINATES: similar to AA sequence:RefSeq:WP_006652360.1
COORDINATES: similar to AA sequence:RefSeq:WP_007143840.1
GO:0004048 - anthranilate phosphoribosyltransferase activity [Evidence IEA]
GO:0000162 - tryptophan biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005579533.1
COORDINATES: similar to AA sequence:RefSeq:WP_015323364.1
COORDINATES: similar to AA sequence:RefSeq:WP_005044567.1
COORDINATES: similar to AA sequence:RefSeq:WP_006667205.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594477.1
ArdC-like ssDNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006186988.1
GO:0016779 - nucleotidyltransferase activity [Evidence IEA]
nucleotidyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015323357.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015762470.1
COORDINATES: protein motif:HMM:NF013970.2
COORDINATES: protein motif:HMM:NF013561.2
COORDINATES: similar to AA sequence:RefSeq:WP_007979301.1
COORDINATES: protein motif:HMM:NF013209.2
COORDINATES: similar to AA sequence:RefSeq:WP_007979306.1
GO:0020037 - heme binding [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007979302.1
COORDINATES: similar to AA sequence:RefSeq:WP_011225048.1