Haladaptatus halobius strain PSR5 plasmid unnamed7, complete sequence.
type: Entry
definition: Haladaptatus halobius strain PSR5 plasmid unnamed7, complete sequence.
sequence version: NZ_CP085343.1
sequence date: 2023-07-30
sequence: sequence
division: CON
label: NZ_CP085343.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN22361724
keyword: RefSeq
source: Haladaptatus halobius
organism: Haladaptatus halobius
taxonomy: Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Halobacteriales; Haladaptataceae; Haladaptatus.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP085343.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: FALCON v. 3\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 156.0x\nSequencing Technology :: Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 07/30/2023 13:46:35\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 7,673\nCDSs (total) :: 7,610\nGenes (coding) :: 7,335\nCDSs (with protein) :: 7,335\nGenes (RNA) :: 63\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 55\nncRNAs :: 2\nPseudo Genes (total) :: 275\nCDSs (without protein) :: 275\nPseudo Genes (ambiguous residues) :: 0 of 275\nPseudo Genes (frameshifted) :: 105 of 275\nPseudo Genes (incomplete) :: 162 of 275\nPseudo Genes (internal stop) :: 105 of 275\nPseudo Genes (multiple problems) :: 82 of 275\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 21460
topology: circular
so has quality: SO_0000988
location: 1..21460
location: region:1-21460:1
RO_0002162: 2884875

NZ_CP085343
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN22361724
type: BioSample
SIO_000068: biosample

1
title: Halophilic archaea isolated from solar salterns and salt lakes
author: Cui, H.-L.
journal: Unpublished

2
title: Direct Submission
author: Cui, H.-L.
journal: Submitted (19-OCT-2021) School of Food and Biological Engineering, Jiangsu University, No 301 Xuefu Road, Jingkou District, Zhenjiang, Zhenjiang, Jiangsu 212013, China

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21460:1
position: 21460
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-21460:1:source
so part of: sequence
organism: Haladaptatus halobius
mol type: genomic DNA
strain: PSR5
isolation source: saline soil
type material: type strain of Haladaptatus halobius
plasmid: unnamed7
country: China: Xinjiang
collection date: 2018-05

2884875
type: Taxonomy
SIO_000068: taxonomy

LIW51_RS38925
type: Gene
subclass of: SO_0000704
RO_0002162: 2884875
locus tag: LIW51_RS38925
so part of: sequence
location: complement(join(20821..21460,1..77))
location: region:1-21460:-1
so has part: feature:1-77:-1:exon
so has part: feature:20821-21460:-1:exon
subclass of: SO_0000010

73770958
type: Gene
SIO_000068: ncbigene

position:1:-1
position: 1
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:21460:-1
position: 21460
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-77:-1:exon

position:77:-1
position: 77
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:20821-21460:-1:exon

position:20821:-1
position: 20821
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LIW51_RS38925
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2884875
locus tag: LIW51_RS38925
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: type IV secretion system DNA-binding domain-containing protein
translation: MQLLANQFPYTRETAVIAHDYGTDFQSYFRAEGFTVVRVAADDSDVTWNLFRDATRDRDCREIAGAIFGEPVGNNPFHGPAKHVFTAVLIYLRREAERQHKRDALGHDDIVEFLAQDFETVYNRLTEYDELQSHASHLDPESGKGARNVFQTLHEYVDPVFVGKFAHHGEFSIREYIENPDGRVLIIDSAPGEMETLGPMFCLLIDWSIRYAMDADDTGEFSSSMRLINCRRSPSFQT
SIO_010081: LIW51_RS38925
subclass of: SO_0000673
so part of: LIW51_RS38925
location: complement(join(20821..21460,1..77))
location: region:1-21460:-1
so has part: feature:1-77:-1:exon
so has part: feature:20821-21460:-1:exon

WP_255767768.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-77:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:20821-21460:-1:exon

LIW51_RS38240
type: Gene
subclass of: SO_0000704
RO_0002162: 2884875
locus tag: LIW51_RS38240
so part of: sequence
location: complement(201..617)
location: region:201-617:-1
so has part: feature:201-617:-1:exon
subclass of: SO_0000010

68587121
type: Gene
SIO_000068: ncbigene

position:201:-1
position: 201
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:617:-1
position: 617
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:201-617:-1:exon

LIW51_RS38240
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2884875
locus tag: LIW51_RS38240
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSNRRPKQDIRDEIAEAIIVGLLKFAFPPTILDKDAPLHRRFWRWKGVYLGYLVLGLFAFRQPILTGHYLYAGIALVLHMAIPVMGLFVYLTGTVPGFNLPLLTDAQGVVGLGGAVLLLWGGTAFVRKTERRDTAQGR
SIO_010081: LIW51_RS38240
subclass of: SO_0000673
so part of: LIW51_RS38240
location: complement(201..617)
location: region:201-617:-1
so has part: feature:201-617:-1:exon

WP_227381004.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:201-617:-1:exon

LIW51_RS38245
type: Gene
subclass of: SO_0000704
RO_0002162: 2884875
locus tag: LIW51_RS38245
so part of: sequence
location: complement(610..1137)
location: region:610-1137:-1
so has part: feature:610-1137:-1:exon
subclass of: SO_0000010

68587122
type: Gene
SIO_000068: ncbigene

position:610:-1
position: 610
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1137:-1
position: 1137
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:610-1137:-1:exon

LIW51_RS38245
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2884875
locus tag: LIW51_RS38245
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MITYSDYSEGGAGALVNYMRTDQGREISIRDHTGKALSRDELEQFVQHSKECGFERQFIVSPDPDLDVHHRAFDRRTRALMRQWRADKANVRYVYAVHDQRDKPHAHVAVTGPKRELYMDRDDLDTFRETATDVFRESERTSHRQRTTDAQRTLTASQSTVCEYDRTATRDTHHE
SIO_010081: LIW51_RS38245
subclass of: SO_0000673
so part of: LIW51_RS38245
location: complement(610..1137)
location: region:610-1137:-1
so has part: feature:610-1137:-1:exon

WP_227380995.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:610-1137:-1:exon

LIW51_RS38250
type: Gene
subclass of: SO_0000704
RO_0002162: 2884875
locus tag: LIW51_RS38250
so part of: sequence
location: complement(1134..1637)
location: region:1134-1637:-1
so has part: feature:1134-1637:-1:exon
subclass of: SO_0000010

68587123
type: Gene
SIO_000068: ncbigene

position:1134:-1
position: 1134
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1637:-1
position: 1637
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1134-1637:-1:exon

LIW51_RS38250
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2884875
locus tag: LIW51_RS38250
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTTRDTMLTTYVEDDLADEIQQRANQDEVTVSTYIADVLSQHIREQAVEDTMHQTSAEQRVEELVAQARDELLTTTEQMNELLAKTGVNTIATWELVKRDYTDGVRQHALSQGAQRLHGELDHLGVDVEQFHDTLHTVDETSQSETDKRMADTDSDTEPDSGWSFET
SIO_010081: LIW51_RS38250
subclass of: SO_0000673
so part of: LIW51_RS38250
location: complement(1134..1637)
location: region:1134-1637:-1
so has part: feature:1134-1637:-1:exon

WP_227380996.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1134-1637:-1:exon

LIW51_RS38255
type: Gene
subclass of: SO_0000704
RO_0002162: 2884875
locus tag: LIW51_RS38255
so part of: sequence
location: 2449..2655
location: region:2449-2655:1
so has part: feature:2449-2655:1:exon
subclass of: SO_0000010

68587124
type: Gene
SIO_000068: ncbigene

position:2449:1
position: 2449
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2655:1
position: 2655
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2449-2655:1:exon

LIW51_RS38255
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2884875
locus tag: LIW51_RS38255
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005577871.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MARTRALMTETERKYITREEDVSDSKRYQAIARVRDRLEVLEQDVDALAEHHPKLLGELRDVVCKENE
SIO_010081: LIW51_RS38255
subclass of: SO_0000673
so part of: LIW51_RS38255
location: 2449..2655
location: region:2449-2655:1
so has part: feature:2449-2655:1:exon

WP_227381006.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2449-2655:1:exon

LIW51_RS38260
type: Gene
subclass of: SO_0000704
RO_0002162: 2884875
locus tag: LIW51_RS38260
so part of: sequence
location: 2929..3702
location: region:2929-3702:1
so has part: feature:2929-3702:1:exon
subclass of: SO_0000010

68587125
type: Gene
SIO_000068: ncbigene

position:2929:1
position: 2929
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3702:1
position: 3702
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2929-3702:1:exon

LIW51_RS38260
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2884875
locus tag: LIW51_RS38260
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSENAVSTAVAQFTKSVTNAFTEYTDAPTAVVTEIEAAGEQLAEQVDTLESSHEITQSSLWELEDIVMGEYDSANPRFKERSIVEQIDEIEATVEDVNPGGDGTKTTVHNTLLAESPLEQVTGLTEQEAMQNLSSNQVRARTIAMNIPAIATSAEAGFVIDNSTLRSELTKIKGERPNDNDVKRVRDFLSDLGKEHVDIVDHRGSKMVVVEKAYAKQLGRTSYSPEECLVVEHKNNWRDMVELHSSGNGATQASAAV
SIO_010081: LIW51_RS38260
subclass of: SO_0000673
so part of: LIW51_RS38260
location: 2929..3702
location: region:2929-3702:1
so has part: feature:2929-3702:1:exon

WP_227380997.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2929-3702:1:exon

LIW51_RS38265
type: Gene
subclass of: SO_0000704
RO_0002162: 2884875
locus tag: LIW51_RS38265
so part of: sequence
location: 4570..4950
location: region:4570-4950:1
so has part: feature:4570-4950:1:exon
subclass of: SO_0000010

68587126
type: Gene
SIO_000068: ncbigene

position:4570:1
position: 4570
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4950:1
position: 4950
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4570-4950:1:exon

LIW51_RS38265
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2884875
locus tag: LIW51_RS38265
inference: COORDINATES: protein motif:HMM:NF019498.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: cupin domain-containing protein
translation: MDEVTVTTQASLEAPDETADVSRQKIFETEDTIMVQSRVAGGITTGWHHNGDRHVYGYVVEGHAMLEYGPAGGDSVNLDVGDYVYVPPHTIRRIVNPITEDWVIVISFVGSGPPAVSVDGPQSEAE
SIO_010081: LIW51_RS38265
subclass of: SO_0000673
so part of: LIW51_RS38265
location: 4570..4950
location: region:4570-4950:1
so has part: feature:4570-4950:1:exon

WP_227380998.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4570-4950:1:exon

LIW51_RS38270
type: Gene
subclass of: SO_0000704
RO_0002162: 2884875
locus tag: LIW51_RS38270
so part of: sequence
location: 5693..6157
location: region:5693-6157:1
so has part: feature:5693-6157:1:exon
subclass of: SO_0000010

68587127
type: Gene
SIO_000068: ncbigene

position:5693:1
position: 5693
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6157:1
position: 6157
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5693-6157:1:exon

LIW51_RS38270
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2884875
locus tag: LIW51_RS38270
inference: COORDINATES: protein motif:HMM:NF013561.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: CopG family transcriptional regulator
translation: MSESESNSSQKHQNVTVRVTKETAEQLSEEADERGMSRAQLLRELINSREVLLSSGHASVGDHSSSGRESDVSGEQLTDLREQLTEAREKMHEEREERIRYEERVTLLEREKEQAVGEKNRWQNKYHEANGKLKVHHSERESLPARLKSWLTGE
SIO_010081: LIW51_RS38270
subclass of: SO_0000673
so part of: LIW51_RS38270
location: 5693..6157
location: region:5693-6157:1
so has part: feature:5693-6157:1:exon

WP_227380999.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5693-6157:1:exon

LIW51_RS38275
type: Gene
subclass of: SO_0000704
RO_0002162: 2884875
locus tag: LIW51_RS38275
so part of: sequence
location: complement(6721..7026)
location: region:6721-7026:-1
so has part: feature:6721-7026:-1:exon
subclass of: SO_0000010

68587128
type: Gene
SIO_000068: ncbigene

position:6721:-1
position: 6721
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7026:-1
position: 7026
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6721-7026:-1:exon

LIW51_RS38275
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2884875
locus tag: LIW51_RS38275
inference: COORDINATES: protein motif:HMM:NF036897.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: HalOD1 output domain-containing protein
translation: MSSNQPSAIAADQDESSEQASSCTEQLSLRVTHAVADAAGSSSDELEPLYHAIDPEALDSLFAPTYSETSRSEGLVQFVYAEYEVIIHSTGEVTVTPVNKS
SIO_010081: LIW51_RS38275
subclass of: SO_0000673
so part of: LIW51_RS38275
location: complement(6721..7026)
location: region:6721-7026:-1
so has part: feature:6721-7026:-1:exon

WP_227381000.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6721-7026:-1:exon

LIW51_RS38280
type: Gene
subclass of: SO_0000704
RO_0002162: 2884875
locus tag: LIW51_RS38280
so part of: sequence
location: complement(7508..7750)
location: region:7508-7750:-1
so has part: feature:7508-7750:-1:exon
subclass of: SO_0000010

68587129
type: Gene
SIO_000068: ncbigene

position:7508:-1
position: 7508
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7750:-1
position: 7750
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7508-7750:-1:exon

LIW51_RS38280
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2884875
locus tag: LIW51_RS38280
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLPLVILNDIVLGEFWQVNVDESDPCLSGGSDIIDFLMDVVDQLGKLGTVCVFVSEISQESAPLSVSEQLEDGLERAALG
SIO_010081: LIW51_RS38280
subclass of: SO_0000673
so part of: LIW51_RS38280
location: complement(7508..7750)
location: region:7508-7750:-1
so has part: feature:7508-7750:-1:exon

WP_227381001.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7508-7750:-1:exon

LIW51_RS38285
type: Gene
subclass of: SO_0000704
RO_0002162: 2884875
locus tag: LIW51_RS38285
so part of: sequence
location: complement(8252..8617)
location: region:8252-8617:-1
so has part: feature:8252-8617:-1:exon
subclass of: SO_0000010

68587130
type: Gene
SIO_000068: ncbigene

position:8252:-1
position: 8252
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8617:-1
position: 8617
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8252-8617:-1:exon

LIW51_RS38285
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2884875
locus tag: LIW51_RS38285
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTKNSDYIRRLAEAGFSDVLMLSRETAERVLTPKRMELLTELATTDVRSMRDLGRRVDRDISIVKRDLDVLYEAGIVEYEQEGRAKRPVLAHENVFVEPVVFDGEPLGASTTKPIDELAAD
SIO_010081: LIW51_RS38285
subclass of: SO_0000673
so part of: LIW51_RS38285
location: complement(8252..8617)
location: region:8252-8617:-1
so has part: feature:8252-8617:-1:exon

WP_227381002.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8252-8617:-1:exon

LIW51_RS38290
type: Gene
subclass of: SO_0000704
RO_0002162: 2884875
locus tag: LIW51_RS38290
so part of: sequence
location: 8761..9075
location: region:8761-9075:1
so has part: feature:8761-9075:1:exon
subclass of: SO_0000010

68587131
type: Gene
SIO_000068: ncbigene

position:8761:1
position: 8761
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9075:1
position: 9075
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8761-9075:1:exon

LIW51_RS38290
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2884875
locus tag: LIW51_RS38290
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSSPDTIEYELDTWRGRIYLLRIRGTPSYFDPDDFAVTVYYKDAATETHIEIARVDTAHDFTHFDRLFRNPPDKKPVEWDIWDAVDHFEENWPTYAKRYEENRT
SIO_010081: LIW51_RS38290
subclass of: SO_0000673
so part of: LIW51_RS38290
location: 8761..9075
location: region:8761-9075:1
so has part: feature:8761-9075:1:exon

WP_227381003.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8761-9075:1:exon

LIW51_RS38295
type: Gene
subclass of: SO_0000704
RO_0002162: 2884875
locus tag: LIW51_RS38295
so part of: sequence
location: complement(9697..11346)
location: region:9697-11346:-1
so has part: feature:9697-11346:-1:exon
subclass of: SO_0000010

68587132
type: Gene
SIO_000068: ncbigene

position:9697:-1
position: 9697
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11346:-1
position: 11346
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9697-11346:-1:exon

LIW51_RS38295
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2884875
locus tag: LIW51_RS38295
inference: COORDINATES: protein motif:HMM:NF021897.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type IV secretion system DNA-binding domain-containing protein
translation: MSNRRPKQDIRDEIAEAIIVGLLKFAFPPTILDKDAPLHRRFWRWKGVYLGYLVLGLFAFRQPILTGHYLYAGIALVLHMAIPVMGLFVYLTGTVPGFNLPLLTDAQGVVGLGGAVLLLWGGTAFVRKRNGVTLHKADDEFAIPLASTYQKVEGSSHLPRLDQAISTAIIGETGSGKTAAMQLLANQFPYTRETAVIAHDYGTDFQSYFRAEGFTVVRVAADDSDVTWNLFRDATRDRDCREIAGAIFGEPVGNNPFHGPAKHVFTAVLIYLRREAERQHKRDALGHDDIVEFLAQDFETVYNRLTEYDELQSHASHLDPESGKGARNVFQTLHEYVDPVFVGKFAHHGEFSIREYIENPDGRVLIIDSAPGEMETLGPMFCLLIDWSIRYAMDAETPVNFILDEIDQLPPLTQLSNLTARGRSVGARALIGVQTVGQLKHTYDRSVAGILGNCPQGLYFSPGDNETARYILSELGEQRTTVESETVRNSGGAFDTSEVSTSVSLREQERAPIPSGELKQFGPGECVIKARQEWWIGHTTLLDDVRDQL
SIO_010081: LIW51_RS38295
subclass of: SO_0000673
so part of: LIW51_RS38295
location: complement(9697..11346)
location: region:9697-11346:-1
so has part: feature:9697-11346:-1:exon

WP_227381005.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9697-11346:-1:exon

LIW51_RS38300
type: Gene
subclass of: SO_0000704
RO_0002162: 2884875
locus tag: LIW51_RS38300
so part of: sequence
location: complement(11339..11866)
location: region:11339-11866:-1
so has part: feature:11339-11866:-1:exon
subclass of: SO_0000010

68587133
type: Gene
SIO_000068: ncbigene

position:11339:-1
position: 11339
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11866:-1
position: 11866
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11339-11866:-1:exon

LIW51_RS38300
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2884875
locus tag: LIW51_RS38300
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MITYSDYSEGGAGALVNYMRTDQGREISIRDHTGKALSRDELEQFVQHSKECGFERQFIVSPDPDLDVHHRAFDRRTRALMRQWRADKANVRYVYAVHDQRDKPHAHVAVTGPKRELYMDRDDLDTFRETATDVFRESERTSHRQRTTDAQRTLTASQSTVCEYDRTATRDTHHE
SIO_010081: LIW51_RS38300
subclass of: SO_0000673
so part of: LIW51_RS38300
location: complement(11339..11866)
location: region:11339-11866:-1
so has part: feature:11339-11866:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11339-11866:-1:exon

LIW51_RS38305
type: Gene
subclass of: SO_0000704
RO_0002162: 2884875
locus tag: LIW51_RS38305
so part of: sequence
location: complement(11863..12366)
location: region:11863-12366:-1
so has part: feature:11863-12366:-1:exon
subclass of: SO_0000010

68587134
type: Gene
SIO_000068: ncbigene

position:11863:-1
position: 11863
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12366:-1
position: 12366
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11863-12366:-1:exon

LIW51_RS38305
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2884875
locus tag: LIW51_RS38305
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTTRDTMLTTYVEDDLADEIQQRANQDEVTVSTYIADVLSQHIREQAVEDTMHQTSAEQRVEELVAQARDELLTTTEQMNELLAKTGVNTIATWELVKRDYTDGVRQHALSQGAQRLHGELDHLGVDVEQFHDTLHTVDETSQSETDKRMADTDSDTEPDSGWSFET
SIO_010081: LIW51_RS38305
subclass of: SO_0000673
so part of: LIW51_RS38305
location: complement(11863..12366)
location: region:11863-12366:-1
so has part: feature:11863-12366:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11863-12366:-1:exon

LIW51_RS38310
type: Gene
subclass of: SO_0000704
RO_0002162: 2884875
locus tag: LIW51_RS38310
so part of: sequence
location: 13178..13384
location: region:13178-13384:1
so has part: feature:13178-13384:1:exon
subclass of: SO_0000010

68587135
type: Gene
SIO_000068: ncbigene

position:13178:1
position: 13178
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13384:1
position: 13384
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13178-13384:1:exon

LIW51_RS38310
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2884875
locus tag: LIW51_RS38310
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005577871.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MARTRALMTETERKYITREEDVSDSKRYQAIARVRDRLEVLEQDVDALAEHHPKLLGELRDVVCKENE
SIO_010081: LIW51_RS38310
subclass of: SO_0000673
so part of: LIW51_RS38310
location: 13178..13384
location: region:13178-13384:1
so has part: feature:13178-13384:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:13178-13384:1:exon

LIW51_RS38315
type: Gene
subclass of: SO_0000704
RO_0002162: 2884875
locus tag: LIW51_RS38315
so part of: sequence
location: 13658..14431
location: region:13658-14431:1
so has part: feature:13658-14431:1:exon
subclass of: SO_0000010

68587136
type: Gene
SIO_000068: ncbigene

position:13658:1
position: 13658
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14431:1
position: 14431
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13658-14431:1:exon

LIW51_RS38315
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2884875
locus tag: LIW51_RS38315
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSENAVSTAVAQFTKSVTNAFTEYTDAPTAVVTEIEAAGEQLAEQVDTLESSHEITQSSLWELEDIVMGEYDSANPRFKERSIVEQIDEIEATVEDVNPGGDGTKTTVHNTLLAESPLEQVTGLTEQEAMQNLSSNQVRARTIAMNIPAIATSAEAGFVIDNSTLRSELTKIKGERPNDNDVKRVRDFLSDLGKEHVDIVDHRGSKMVVVEKAYAKQLGRTSYSPEECLVVEHKNNWRDMVELHSSGNGATQASAAV
SIO_010081: LIW51_RS38315
subclass of: SO_0000673
so part of: LIW51_RS38315
location: 13658..14431
location: region:13658-14431:1
so has part: feature:13658-14431:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:13658-14431:1:exon

LIW51_RS38320
type: Gene
subclass of: SO_0000704
RO_0002162: 2884875
locus tag: LIW51_RS38320
so part of: sequence
location: 15299..15679
location: region:15299-15679:1
so has part: feature:15299-15679:1:exon
subclass of: SO_0000010

68587137
type: Gene
SIO_000068: ncbigene

position:15299:1
position: 15299
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15679:1
position: 15679
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15299-15679:1:exon

LIW51_RS38320
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2884875
locus tag: LIW51_RS38320
inference: COORDINATES: protein motif:HMM:NF019498.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: cupin domain-containing protein
translation: MDEVTVTTQASLEAPDETADVSRQKIFETEDTIMVQSRVAGGITTGWHHNGDRHVYGYVVEGHAMLEYGPAGGDSVNLDVGDYVYVPPHTIRRIVNPITEDWVIVISFVGSGPPAVSVDGPQSEAE
SIO_010081: LIW51_RS38320
subclass of: SO_0000673
so part of: LIW51_RS38320
location: 15299..15679
location: region:15299-15679:1
so has part: feature:15299-15679:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:15299-15679:1:exon

LIW51_RS38325
type: Gene
subclass of: SO_0000704
RO_0002162: 2884875
locus tag: LIW51_RS38325
so part of: sequence
location: 16422..16886
location: region:16422-16886:1
so has part: feature:16422-16886:1:exon
subclass of: SO_0000010

68587138
type: Gene
SIO_000068: ncbigene

position:16422:1
position: 16422
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16886:1
position: 16886
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16422-16886:1:exon

LIW51_RS38325
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2884875
locus tag: LIW51_RS38325
inference: COORDINATES: protein motif:HMM:NF013561.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: CopG family transcriptional regulator
translation: MSESESNSSQKHQNVTVRVTKETAEQLSEEADERGMSRAQLLRELINSREVLLSSGHASVGDHSSSGRESDVSGEQLTDLREQLTEAREKMHEEREERIRYEERVTLLEREKEQAVGEKNRWQNKYHEANGKLKVHHSERESLPARLKSWLTGE
SIO_010081: LIW51_RS38325
subclass of: SO_0000673
so part of: LIW51_RS38325
location: 16422..16886
location: region:16422-16886:1
so has part: feature:16422-16886:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:16422-16886:1:exon

LIW51_RS38330
type: Gene
subclass of: SO_0000704
RO_0002162: 2884875
locus tag: LIW51_RS38330
so part of: sequence
location: complement(17450..17755)
location: region:17450-17755:-1
so has part: feature:17450-17755:-1:exon
subclass of: SO_0000010

68587139
type: Gene
SIO_000068: ncbigene

position:17450:-1
position: 17450
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17755:-1
position: 17755
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17450-17755:-1:exon

LIW51_RS38330
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2884875
locus tag: LIW51_RS38330
inference: COORDINATES: protein motif:HMM:NF036897.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: HalOD1 output domain-containing protein
translation: MSSNQPSAIAADQDESSEQASSCTEQLSLRVTHAVADAAGSSSDELEPLYHAIDPEALDSLFAPTYSETSRSEGLVQFVYAEYEVIIHSTGEVTVTPVNKS
SIO_010081: LIW51_RS38330
subclass of: SO_0000673
so part of: LIW51_RS38330
location: complement(17450..17755)
location: region:17450-17755:-1
so has part: feature:17450-17755:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:17450-17755:-1:exon

LIW51_RS38335
type: Gene
subclass of: SO_0000704
RO_0002162: 2884875
locus tag: LIW51_RS38335
so part of: sequence
location: complement(18237..18479)
location: region:18237-18479:-1
so has part: feature:18237-18479:-1:exon
subclass of: SO_0000010

68587140
type: Gene
SIO_000068: ncbigene

position:18237:-1
position: 18237
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18479:-1
position: 18479
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18237-18479:-1:exon

LIW51_RS38335
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2884875
locus tag: LIW51_RS38335
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLPLVILNDIVLGEFWQVNVDESDPCLSGGSDIIDFLMDVVDQLGKLGTVCVFVSEISQESAPLSVSEQLEDGLERAALG
SIO_010081: LIW51_RS38335
subclass of: SO_0000673
so part of: LIW51_RS38335
location: complement(18237..18479)
location: region:18237-18479:-1
so has part: feature:18237-18479:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:18237-18479:-1:exon

LIW51_RS38340
type: Gene
subclass of: SO_0000704
RO_0002162: 2884875
locus tag: LIW51_RS38340
so part of: sequence
location: complement(18981..19346)
location: region:18981-19346:-1
so has part: feature:18981-19346:-1:exon
subclass of: SO_0000010

68587141
type: Gene
SIO_000068: ncbigene

position:18981:-1
position: 18981
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19346:-1
position: 19346
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18981-19346:-1:exon

LIW51_RS38340
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2884875
locus tag: LIW51_RS38340
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTKNSDYIRRLAEAGFSDVLMLSRETAERVLTPKRMELLTELATTDVRSMRDLGRRVDRDISIVKRDLDVLYEAGIVEYEQEGRAKRPVLAHENVFVEPVVFDGEPLGASTTKPIDELAAD
SIO_010081: LIW51_RS38340
subclass of: SO_0000673
so part of: LIW51_RS38340
location: complement(18981..19346)
location: region:18981-19346:-1
so has part: feature:18981-19346:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:18981-19346:-1:exon

LIW51_RS38345
type: Gene
subclass of: SO_0000704
RO_0002162: 2884875
locus tag: LIW51_RS38345
so part of: sequence
location: 19490..19804
location: region:19490-19804:1
so has part: feature:19490-19804:1:exon
subclass of: SO_0000010

68587142
type: Gene
SIO_000068: ncbigene

position:19490:1
position: 19490
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19804:1
position: 19804
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19490-19804:1:exon

LIW51_RS38345
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2884875
locus tag: LIW51_RS38345
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSSPDTIEYELDTWRGRIYLLRIRGTPSYFDPDDFAVTVYYKDAATETHIEIARVDTAHDFTHFDRLFRNPPDKKPVEWDIWDAVDHFEENWPTYAKRYEENRT
SIO_010081: LIW51_RS38345
subclass of: SO_0000673
so part of: LIW51_RS38345
location: 19490..19804
location: region:19490-19804:1
so has part: feature:19490-19804:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:19490-19804:1:exon

LIW51_RS38930
type: Gene
subclass of: SO_0000704
RO_0002162: 2884875
locus tag: LIW51_RS38930
so part of: sequence
location: complement(20426..20872)
location: region:20426-20872:-1
so has part: feature:20426-20872:-1:exon
subclass of: SO_0000010

73770959
type: Gene
SIO_000068: ncbigene

position:20426:-1
position: 20426
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20872:-1
position: 20872
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20426-20872:-1:exon

LIW51_RS38930
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2884875
locus tag: LIW51_RS38930
inference: COORDINATES: protein motif:HMM:NF021897.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TraM recognition domain-containing protein
translation: MLDEIDQLPPLTQLSNLTARGRSVGARALIGVQTVGQLKHTYDRSVAGILGNCPQGLYFSPGDNETARYILSELGEQRTTVESETVRNSGGAFDTSEVSTSVSLREQERAPIPSGELKQFGPGECVIKARQEWWIGHTTLLDDVRDQL
SIO_010081: LIW51_RS38930
subclass of: SO_0000673
so part of: LIW51_RS38930
location: complement(20426..20872)
location: region:20426-20872:-1
so has part: feature:20426-20872:-1:exon

WP_255767769.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20426-20872:-1:exon