Haladaptatus halobius strain PSR5 plasmid unnamed5, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Halobacteriales; Haladaptataceae; Haladaptatus.
Halophilic archaea isolated from solar salterns and salt lakes
Submitted (19-OCT-2021) School of Food and Biological Engineering, Jiangsu University, No 301 Xuefu Road, Jingkou District, Zhenjiang, Zhenjiang, Jiangsu 212013, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP085341.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: FALCON v. 3\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 156.0x\nSequencing Technology :: Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 07/30/2023 13:46:35\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 7,673\nCDSs (total) :: 7,610\nGenes (coding) :: 7,335\nCDSs (with protein) :: 7,335\nGenes (RNA) :: 63\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 55\nncRNAs :: 2\nPseudo Genes (total) :: 275\nCDSs (without protein) :: 275\nPseudo Genes (ambiguous residues) :: 0 of 275\nPseudo Genes (frameshifted) :: 105 of 275\nPseudo Genes (incomplete) :: 162 of 275\nPseudo Genes (internal stop) :: 105 of 275\nPseudo Genes (multiple problems) :: 82 of 275\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_007539046.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004977644.1
GO:0051287 - NAD binding [Evidence IEA]; GO:0016651 - oxidoreductase activity, acting on NAD(P)H [Evidence IEA]; GO:0048038 - quinone binding [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007980706.1
GO:0030964 - NADH dehydrogenase complex [Evidence IEA]
GO:0050136 - NADH dehydrogenase (quinone) activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008384472.1
GO:0008124 - 4-alpha-hydroxytetrahydrobiopterin dehydratase activity [Evidence IEA]
GO:0006729 - tetrahydrobiopterin biosynthetic process [Evidence IEA]
4a-hydroxytetrahydrobiopterin dehydratase
COORDINATES: similar to AA sequence:RefSeq:WP_006664342.1
COORDINATES: similar to AA sequence:RefSeq:WP_008161820.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007981051.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_004518043.1
COORDINATES: similar to AA sequence:RefSeq:WP_010902144.1
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007982411.1
COORDINATES: similar to AA sequence:RefSeq:WP_007982082.1
COORDINATES: similar to AA sequence:RefSeq:WP_007190058.1
COORDINATES: similar to AA sequence:RefSeq:WP_006078838.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
quaternary ammonium compound efflux SMR transporter SugE
COORDINATES: protein motif:HMM:NF015513.2
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_006075840.1
COORDINATES: protein motif:HMM:NF036897.2
COORDINATES: similar to AA sequence:RefSeq:WP_020222877.1
COORDINATES: similar to AA sequence:RefSeq:WP_006090862.1
COORDINATES: similar to AA sequence:RefSeq:WP_007983119.1
COORDINATES: protein motif:HMM:NF027245.2
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007261250.1
COORDINATES: similar to AA sequence:RefSeq:WP_007983572.1
COORDINATES: similar to AA sequence:RefSeq:WP_006824739.1
COORDINATES: similar to AA sequence:RefSeq:WP_004216933.1
COORDINATES: similar to AA sequence:RefSeq:WP_013880648.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594348.1
COORDINATES: similar to AA sequence:RefSeq:WP_006088941.1
Lrp/AsnC ligand binding domain-containing protein
COORDINATES: protein motif:HMM:NF019095.2
COORDINATES: similar to AA sequence:RefSeq:WP_007979366.1
twin-arginine translocation signal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013880122.1
COORDINATES: similar to AA sequence:RefSeq:WP_007698033.1
Lrp/AsnC family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_009486662.1
COORDINATES: similar to AA sequence:RefSeq:WP_007140631.1
COORDINATES: similar to AA sequence:RefSeq:WP_006092560.1
COORDINATES: similar to AA sequence:RefSeq:WP_005580232.1
COORDINATES: similar to AA sequence:RefSeq:WP_007981208.1
COORDINATES: similar to AA sequence:RefSeq:WP_007110796.1
COORDINATES: protein motif:HMM:NF020897.2
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008382938.1
GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0016651 - oxidoreductase activity, acting on NAD(P)H [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005580179.1
COORDINATES: similar to AA sequence:RefSeq:WP_006079324.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007696895.1
COORDINATES: similar to AA sequence:RefSeq:WP_015301688.1
PPOX class F420-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_009760740.1
COORDINATES: protein motif:HMM:NF012791.2
COORDINATES: similar to AA sequence:RefSeq:WP_004050922.1
COORDINATES: similar to AA sequence:RefSeq:WP_007740753.1
COORDINATES: similar to AA sequence:RefSeq:WP_008419079.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007740740.1
COORDINATES: similar to AA sequence:RefSeq:WP_007740945.1
GO:0006817 - phosphate ion transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00765.1
YihY/virulence factor BrkB family protein
COORDINATES: protein motif:HMM:NF013740.2
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
GO:1905887 - autoinducer AI-2 transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF021539.2
GO:0032559 - adenyl ribonucleotide binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF018961.2
COORDINATES: similar to AA sequence:RefSeq:WP_007982667.1
GO:0031412 - gas vesicle organization [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007982669.1
GO:0033172 - gas vesicle shell [Evidence IEA]; GO:0012506 - vesicle membrane [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007982671.1
COORDINATES: similar to AA sequence:RefSeq:WP_007982673.1
COORDINATES: similar to AA sequence:RefSeq:WP_007982675.1
COORDINATES: similar to AA sequence:RefSeq:WP_006056153.1
COORDINATES: similar to AA sequence:RefSeq:WP_007982678.1
COORDINATES: similar to AA sequence:RefSeq:WP_007982679.1
COORDINATES: similar to AA sequence:RefSeq:WP_007982680.1
COORDINATES: similar to AA sequence:RefSeq:WP_007982681.1
COORDINATES: similar to AA sequence:RefSeq:WP_007982684.1
COORDINATES: similar to AA sequence:RefSeq:WP_008013187.1
COORDINATES: similar to AA sequence:RefSeq:WP_014050933.1
COORDINATES: similar to AA sequence:RefSeq:WP_007976878.1
diacylglycerol kinase family lipid kinase
COORDINATES: similar to AA sequence:RefSeq:WP_014030812.1
COORDINATES: similar to AA sequence:RefSeq:WP_008383573.1
COORDINATES: similar to AA sequence:RefSeq:WP_006648080.1
COORDINATES: similar to AA sequence:RefSeq:WP_020220685.1
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007981044.1
COORDINATES: similar to AA sequence:RefSeq:WP_008010613.1
COORDINATES: similar to AA sequence:RefSeq:WP_008383574.1
COORDINATES: similar to AA sequence:RefSeq:WP_007981047.1
COORDINATES: similar to AA sequence:RefSeq:WP_007977641.1
COORDINATES: protein motif:HMM:NF040111.1
COORDINATES: similar to AA sequence:RefSeq:WP_007690596.1
COORDINATES: similar to AA sequence:RefSeq:WP_006431198.1
COORDINATES: similar to AA sequence:RefSeq:WP_007979336.1
GO:0003825 - alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005555914.1
bacterio-opsin activator domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007140874.1
COORDINATES: similar to AA sequence:RefSeq:WP_007982434.1
GO:0005886 - plasma membrane [Evidence IEA]
COORDINATES: protein motif:HMM:NF013080.2
COORDINATES: similar to AA sequence:RefSeq:WP_013880994.1
COORDINATES: protein motif:HMM:NF012452.2
COORDINATES: similar to AA sequence:RefSeq:WP_010611993.1
COORDINATES: similar to AA sequence:RefSeq:WP_007740761.1
GO:0015499 - formate transmembrane transporter activity [Evidence IEA]
GO:0015724 - formate transport [Evidence IEA]
formate/nitrite transporter family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006630550.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007981046.1
COORDINATES: similar to AA sequence:RefSeq:WP_004215226.1
COORDINATES: similar to AA sequence:RefSeq:WP_008390029.1
COORDINATES: protein motif:HMM:NF016831.2
COORDINATES: similar to AA sequence:RefSeq:WP_005555604.1
COORDINATES: similar to AA sequence:RefSeq:WP_007692932.1
COORDINATES: similar to AA sequence:RefSeq:WP_007976982.1
COORDINATES: similar to AA sequence:RefSeq:WP_007978981.1
COORDINATES: similar to AA sequence:RefSeq:WP_006648079.1
COORDINATES: similar to AA sequence:RefSeq:WP_006055666.1
COORDINATES: similar to AA sequence:RefSeq:WP_005043107.1
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007276061.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053449.1
COORDINATES: protein motif:HMM:NF025702.2
COORDINATES: similar to AA sequence:RefSeq:WP_008893567.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006078979.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009762177.1
COORDINATES: similar to AA sequence:RefSeq:WP_005039997.1
COORDINATES: similar to AA sequence:RefSeq:WP_006055572.1
COORDINATES: similar to AA sequence:RefSeq:WP_004058609.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006430936.1
COORDINATES: similar to AA sequence:RefSeq:WP_007980805.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013188.2
COORDINATES: similar to AA sequence:RefSeq:WP_007740574.1
COORDINATES: similar to AA sequence:RefSeq:WP_005537188.1
COORDINATES: protein motif:HMM:NF012780.2
COORDINATES: similar to AA sequence:RefSeq:WP_015321476.1
NAD-dependent succinate-semialdehyde dehydrogenase
COORDINATES: protein motif:HMM:NF013422.2
COORDINATES: similar to AA sequence:RefSeq:WP_006077816.1
COORDINATES: similar to AA sequence:RefSeq:WP_006666805.1
COORDINATES: similar to AA sequence:RefSeq:WP_006667171.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222435.1
COORDINATES: similar to AA sequence:RefSeq:WP_014280340.1
COORDINATES: similar to AA sequence:RefSeq:WP_020138421.1
COORDINATES: similar to AA sequence:RefSeq:WP_012876702.1
COORDINATES: similar to AA sequence:RefSeq:WP_012876772.1
COORDINATES: protein motif:HMM:NF012471.2
COORDINATES: similar to AA sequence:RefSeq:WP_005556681.1
GO:0008236 - serine-type peptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012311.2
COORDINATES: similar to AA sequence:RefSeq:WP_007979083.1
COORDINATES: similar to AA sequence:RefSeq:WP_007979082.1
COORDINATES: similar to AA sequence:RefSeq:WP_007979081.1
COORDINATES: similar to AA sequence:RefSeq:WP_007979080.1
COORDINATES: similar to AA sequence:RefSeq:WP_005044894.1
GO:0042910 - xenobiotic transmembrane transporter activity [Evidence IEA]
GO:0009410 - response to xenobiotic stimulus [Evidence IEA]; GO:0006855 - xenobiotic transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008414996.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012097399.1
COORDINATES: similar to AA sequence:RefSeq:WP_013199636.1
COORDINATES: similar to AA sequence:RefSeq:WP_004967251.1
COORDINATES: similar to AA sequence:RefSeq:WP_004967252.1
GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007188052.1
COORDINATES: similar to AA sequence:RefSeq:WP_009717101.1
GO:0051920 - peroxiredoxin activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007702793.1
COORDINATES: similar to AA sequence:RefSeq:WP_007696247.1
aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_005046103.1
COORDINATES: similar to AA sequence:RefSeq:WP_011531289.1
COORDINATES: protein motif:HMM:NF014080.2
COORDINATES: similar to AA sequence:RefSeq:WP_008323606.1
COORDINATES: similar to AA sequence:RefSeq:WP_004048351.1
COORDINATES: similar to AA sequence:RefSeq:WP_008446347.1
orc1/cdc6 family replication initiation protein
COORDINATES: similar to AA sequence:RefSeq:WP_008445009.1
COORDINATES: similar to AA sequence:RefSeq:WP_004043375.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008323302.1
COORDINATES: similar to AA sequence:RefSeq:WP_007978624.1
COORDINATES: similar to AA sequence:RefSeq:WP_007975915.1
COORDINATES: protein motif:HMM:NF014047.2
COORDINATES: similar to AA sequence:RefSeq:WP_006088548.1
COORDINATES: similar to AA sequence:RefSeq:WP_007975914.1
COORDINATES: similar to AA sequence:RefSeq:WP_006430241.1
COORDINATES: similar to AA sequence:RefSeq:WP_014556651.1
COORDINATES: protein motif:HMM:NF024950.2
COORDINATES: similar to AA sequence:RefSeq:WP_012946205.1
COORDINATES: similar to AA sequence:RefSeq:WP_007981519.1
COORDINATES: similar to AA sequence:RefSeq:WP_007979290.1
COORDINATES: protein motif:HMM:NF021897.2
type IV secretion system DNA-binding domain-containing protein
COORDINATES: protein motif:HMM:NF023096.2
COORDINATES: similar to AA sequence:RefSeq:WP_007345182.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]; GO:0004521 - RNA endonuclease activity [Evidence IEA]
type II toxin-antitoxin system PemK/MazF family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_006185809.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007140871.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007343992.1
COORDINATES: protein motif:HMM:NF016107.2
COORDINATES: similar to AA sequence:RefSeq:WP_015762108.1
COORDINATES: similar to AA sequence:RefSeq:WP_008384295.1
GO:0004062 - aryl sulfotransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012346.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF015925.2
GO:0004497 - monooxygenase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006182271.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_010546436.1
GO:0046872 - metal ion binding [Evidence IEA]; GO:0042578 - phosphoric ester hydrolase activity [Evidence IEA]
GO:0045227 - capsule polysaccharide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007981635.1
COORDINATES: similar to AA sequence:RefSeq:WP_007978769.1
GO:0008381 - mechanosensitive monoatomic ion channel activity [Evidence IEA]
mechanosensitive ion channel family protein
COORDINATES: protein motif:HMM:NF024753.2
PQQ-binding-like beta-propeller repeat protein
COORDINATES: similar to AA sequence:RefSeq:WP_007740264.1
COORDINATES: similar to AA sequence:RefSeq:WP_009762116.1
COORDINATES: similar to AA sequence:RefSeq:WP_006112203.1
COORDINATES: similar to AA sequence:RefSeq:WP_004046542.1