Solea senegalensis mitochondrion, complete genome.
type: Entry
definition: Solea senegalensis mitochondrion, complete genome.
sequence version: NC_008327.1
sequence date: 2023-04-03
sequence: sequence
division: VRT
label: NC_008327.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA927338
keyword: RefSeq
source: mitochondrion Solea senegalensis (Senegalese sole)
organism: Solea senegalensis
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Soleidae; Solea.
reference: 1
references: 17454000
reference: 2
reference: 3
comment: REVIEWED REFSEQ: This record has been curated by NCBI staff. The\nreference sequence was derived from AB270760.\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000819
sequence length: 16659
topology: circular
so has quality: SO_0000988
location: 1..16659
location: region:1-16659:1
RO_0002162: 28829

NC_008327
type: RefSeq
SIO_000068: refseq

PRJNA927338
type: BioProject
SIO_000068: bioproject

1
title: The complete mitochondrial genome of the Senegal sole, Solea senegalensis Kaup. Comparative analysis of tandem repeats in the control region among soles
author: Manchado, M.
author: Catanese, G.
author: Ponce, M.
author: Funes, V.
author: Infante, C.
journal: DNA Seq.
volume: 18
issue: 3
pages: 169-175
year: 2007
pubmed: 17454000

17454000
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
journal: Submitted (06-SEP-2006) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

3
title: Direct Submission
author: Catanese, G.
author: Manchado, M.
journal: Submitted (22-AUG-2006) IFAPA (CICE). Junta de Andalucia, Laboratorio de Idenficacion de Especies Pesqueras y Acuicolas; CIFAP 'El Toruno', Camino Tiro de Pichon s/n, El Pto de Sta Maria 11500, Spain

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16659:1
position: 16659
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-16659:1:source
so part of: sequence
organism: Solea senegalensis
organelle: mitochondrion
mol type: genomic DNA
country: Spain: Cadiz

28829
type: Taxonomy
SIO_000068: taxonomy

D-loop
type: Displacement Loop
subclass of: SO_0000297
RO_0002162: 28829
so part of: sequence
location: 1..1017
location: region:1-1017:1
so has part: feature:1-1017:1:region

position:1017:1
position: 1017
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-1017:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 28829
product: tRNA-Phe
so part of: sequence
location: 1018..1085
location: region:1018-1085:1
so has part: feature:1018-1085:1:region

position:1018:1
position: 1018
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1085:1
position: 1085
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1018-1085:1:region

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 28829
product: s-rRNA
note: 12S ribosomal RNA
so part of: sequence
location: 1086..2031
location: region:1086-2031:1
so has part: feature:1086-2031:1:region

position:1086:1
position: 1086
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2031:1
position: 2031
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1086-2031:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 28829
product: tRNA-Val
so part of: sequence
location: 2032..2102
location: region:2032-2102:1
so has part: feature:2032-2102:1:region

position:2032:1
position: 2032
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2102:1
position: 2102
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2032-2102:1:region

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 28829
product: l-rRNA
note: 16S ribosomal RNA
so part of: sequence
location: 2103..3800
location: region:2103-3800:1
so has part: feature:2103-3800:1:region

position:2103:1
position: 2103
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3800:1
position: 3800
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2103-3800:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 28829
product: tRNA-Leu
codon recognized: UUR
so part of: sequence
location: 3801..3873
location: region:3801-3873:1
so has part: feature:3801-3873:1:region

position:3801:1
position: 3801
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3873:1
position: 3873
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3801-3873:1:region

ND1
type: Gene
subclass of: SO_0000704
RO_0002162: 28829
gene: ND1
so part of: sequence
location: 3874..4848
location: region:3874-4848:1
so has part: feature:3874-4848:1:exon
subclass of: SO_0000010

4266845
type: Gene
SIO_000068: ncbigene

position:3874:1
position: 3874
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4848:1
position: 4848
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3874-4848:1:exon

ND1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 28829
gene: ND1
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 1
translation: MILSLVTLILHPLTMIVPVLLAVAFLTLLERKTISYMQLRKGPNIVGPYGLLQPIADGIKLFIKEPIRPSTASPLMFILAPVLALTLALALWLPMPLPYPIIDLNLGILFVLALSSLAVYSILGAGWASNSKYALIGALRAVAQTISYEVNLGLILISVTIIVGEFTLQTFATSQESTWMILPLWPLAAMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYSNILLMNTLSVILFLGASHNPALPELTTINIMVKAAFLSVVFLWVRASFPRFRYDQLMHLTWKNFLPLTLAMVIWNLAIPTAFAGLPPQL
SIO_010081: ND1
subclass of: SO_0000673
so part of: ND1
location: 3874..4848
location: region:3874-4848:1
so has part: feature:3874-4848:1:exon

YP_740267.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3874-4848:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 28829
product: tRNA-Ile
so part of: sequence
location: 4852..4922
location: region:4852-4922:1
so has part: feature:4852-4922:1:region

position:4852:1
position: 4852
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4922:1
position: 4922
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4852-4922:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 28829
product: tRNA-Gln
so part of: sequence
location: complement(4922..4992)
location: region:4922-4992:-1
so has part: feature:4922-4992:-1:region

position:4922:-1
position: 4922
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4992:-1
position: 4992
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4922-4992:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 28829
product: tRNA-Met
so part of: sequence
location: 4992..5060
location: region:4992-5060:1
so has part: feature:4992-5060:1:region

position:4992:1
position: 4992
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5060:1
position: 5060
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4992-5060:1:region

ND2
type: Gene
subclass of: SO_0000704
RO_0002162: 28829
gene: ND2
so part of: sequence
location: 5061..6101
location: region:5061-6101:1
so has part: feature:5061-6101:1:exon
subclass of: SO_0000010

4266846
type: Gene
SIO_000068: ncbigene

position:5061:1
position: 5061
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6101:1
position: 6101
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5061-6101:1:exon

ND2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 28829
gene: ND2
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 2
translation: MSPLMFSTLLLALGLGSTVTFSSSHWLLAWMGLEINSLAMVPLMARPHFPRAVEAATKYFLAQATAAAMILFAGMTNAWMTGQWTIEMMTHPLPLTLVTLALGLKIGLAPVHAWLPEVLQGVDLTTGLILSTWQKLAPLALLLQLPHGNSPLLIILALSSTLIGGWAGLNQTQLRKILAYSSIAHLGWMMVILQYAPSLTLLALLTYIVMTSSIFLLFKLNNTTNINALATSHTKIPVLTLFAPFILLSLGGLPPLTGFMPKWLILHELTMQGMGTLATITALTALLSLYFYLRLSYSMSLTMSPNNLLTSPLWRLRPHQPTLPLAISATSATMLLPLTPAAFLVR
SIO_010081: ND2
subclass of: SO_0000673
so part of: ND2
location: 5061..6101
location: region:5061-6101:1
so has part: feature:5061-6101:1:exon

YP_740268.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5061-6101:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 28829
product: tRNA-Trp
so part of: sequence
location: 6101..6172
location: region:6101-6172:1
so has part: feature:6101-6172:1:region

position:6172:1
position: 6172
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6101-6172:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 28829
product: tRNA-Ala
so part of: sequence
location: complement(6173..6241)
location: region:6173-6241:-1
so has part: feature:6173-6241:-1:region

position:6173:-1
position: 6173
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6241:-1
position: 6241
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6173-6241:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 28829
product: tRNA-Asn
so part of: sequence
location: complement(6243..6315)
location: region:6243-6315:-1
so has part: feature:6243-6315:-1:region

position:6243:-1
position: 6243
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6315:-1
position: 6315
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6243-6315:-1:region

rep_origin
type: Replication Origin
subclass of: SO_0000296
RO_0002162: 28829
note: origin of replication of light chain
so part of: sequence
location: 6312..6362
location: region:6312-6362:1
so has part: feature:6312-6362:1:region

position:6312:1
position: 6312
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6362:1
position: 6362
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6312-6362:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 28829
product: tRNA-Cys
so part of: sequence
location: complement(6352..6416)
location: region:6352-6416:-1
so has part: feature:6352-6416:-1:region

position:6352:-1
position: 6352
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6416:-1
position: 6416
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6352-6416:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 28829
product: tRNA-Tyr
so part of: sequence
location: complement(6417..6486)
location: region:6417-6486:-1
so has part: feature:6417-6486:-1:region

position:6417:-1
position: 6417
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6486:-1
position: 6486
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6417-6486:-1:region

COX1
type: Gene
subclass of: SO_0000704
RO_0002162: 28829
gene: COX1
so part of: sequence
location: 6488..8038
location: region:6488-8038:1
so has part: feature:6488-8038:1:exon
subclass of: SO_0000010

4266841
type: Gene
SIO_000068: ncbigene

position:6488:1
position: 6488
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8038:1
position: 8038
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6488-8038:1:exon

COX1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 28829
gene: COX1
codon start: 1
transl table: 2
product: cytochrome c oxidase subunit I
translation: MTITRWFFSTNHKDIGTLYLVFGAWAGMVGTALSLLIRAELSQPGSLLGDDQIYNVIVTAHAFVMIFFMVMPVMIGGFGNWLIPLMIGAPDMAFPRMNNMSFWLLPPAFLLLLTSSVVEAGAGTGWTVYPPLSSNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPATMTMYQMPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPVLYQHLFWFFGHPEVYILILPGFGMISHIIAFYCGKKEPFGYMGMVWAMMAIGLLGFIVWAHHMFTVGMDVDIRAYFTSATMIIAIPTGVKVFSWLATLHGGKITWDTPFLWALGFIFLFTVGGLTGIVLSNSSLDIILHDTYYVVAHFHYVLSMGAVFAIMAGFVHWFPLLSGYTLHSTWTKVHFGVMFVGVNLTFFPQHFLGLAGMPRRYSDYPDAYTLWNTVSSIGSMISLIAVIMFLFILWEAFTAKREVLMVKYAQLNVEWLHGCPPPNHTFEEPAFVQVRHN
SIO_010081: COX1
subclass of: SO_0000673
so part of: COX1
location: 6488..8038
location: region:6488-8038:1
so has part: feature:6488-8038:1:exon

YP_740269.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6488-8038:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 28829
product: tRNA-Ser
codon recognized: UCN
so part of: sequence
location: complement(8039..8109)
location: region:8039-8109:-1
so has part: feature:8039-8109:-1:region

position:8039:-1
position: 8039
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8109:-1
position: 8109
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8039-8109:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 28829
product: tRNA-Asp
so part of: sequence
location: 8112..8182
location: region:8112-8182:1
so has part: feature:8112-8182:1:region

position:8112:1
position: 8112
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8182:1
position: 8182
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8112-8182:1:region

COX2
type: Gene
subclass of: SO_0000704
RO_0002162: 28829
gene: COX2
so part of: sequence
location: 8189..8879
location: region:8189-8879:1
so has part: feature:8189-8879:1:exon
subclass of: SO_0000010

4266842
type: Gene
SIO_000068: ncbigene

position:8189:1
position: 8189
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8879:1
position: 8879
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8189-8879:1:exon

COX2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 28829
gene: COX2
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:8879,aa:TERM)
transl table: 2
product: cytochrome c oxidase subunit II
translation: MAHPTQSGFQDAASPLMEELLHFHDHTLMVILMISTLVLYTIITMTLAKLTDMLVLDSQEIEVIWTILPAIVLTFIALPSLRILYLMDEVSDPHLTIKATGHQWYWSYEYSDYENLEFDAYMIPTQDLTPGQFRLLEADHRMVIPVESPIRALVSAEDVLHSWAHPRPGIKVDAIPGRLNQTTFMASHPGVFFGQCSEICGANHSFMPIAIEAVPLPHFENWTSLMIEDA
SIO_010081: COX2
subclass of: SO_0000673
so part of: COX2
location: 8189..8879
location: region:8189-8879:1
so has part: feature:8189-8879:1:exon

YP_740270.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8189-8879:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 28829
product: tRNA-Lys
so part of: sequence
location: 8880..8953
location: region:8880-8953:1
so has part: feature:8880-8953:1:region

position:8880:1
position: 8880
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8953:1
position: 8953
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8880-8953:1:region

ATP8
type: Gene
subclass of: SO_0000704
RO_0002162: 28829
gene: ATP8
so part of: sequence
location: 8955..9122
location: region:8955-9122:1
so has part: feature:8955-9122:1:exon
subclass of: SO_0000010

4266840
type: Gene
SIO_000068: ncbigene

position:8955:1
position: 8955
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9122:1
position: 9122
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8955-9122:1:exon

ATP8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 28829
gene: ATP8
codon start: 1
transl table: 2
product: ATP synthase F0 subunit 8
translation: MPQLNPAPWFLILVFSWLVFLTILPPKILNHTFPNEPTPNSSKKPLTNPWNWPWL
SIO_010081: ATP8
subclass of: SO_0000673
so part of: ATP8
location: 8955..9122
location: region:8955-9122:1
so has part: feature:8955-9122:1:exon

YP_740271.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8955-9122:1:exon

ATP6
type: Gene
subclass of: SO_0000704
RO_0002162: 28829
gene: ATP6
so part of: sequence
location: 9113..9796
location: region:9113-9796:1
so has part: feature:9113-9796:1:exon
subclass of: SO_0000010

4266839
type: Gene
SIO_000068: ncbigene

position:9113:1
position: 9113
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9796:1
position: 9796
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9113-9796:1:exon

ATP6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 28829
gene: ATP6
codon start: 1
transl table: 2
product: ATP synthase F0 subunit 6
translation: MTLSLFNQFASPVLLGIPLIALAILLPWTLLPSPANRWLTNRLLSLQGSFIGGFTKQLVLPLNPGGHKWALLFTSLMVYLITINLLGLLPYTFTPTTQLSLNMGLAIPLWLATVIIGMRNQPTHSLAHFLPEGTPTLLIPVLVIIETISLFIRPLALGVRLTANLTAGHLLIHLIAMATNVLFPLMPSVAILTGTLLLLLTLLEIAVAMIQAYVFVLLLSLYLQENV
SIO_010081: ATP6
subclass of: SO_0000673
so part of: ATP6
location: 9113..9796
location: region:9113-9796:1
so has part: feature:9113-9796:1:exon

YP_740272.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9113-9796:1:exon

COX3
type: Gene
subclass of: SO_0000704
RO_0002162: 28829
gene: COX3
so part of: sequence
location: 9796..10581
location: region:9796-10581:1
so has part: feature:9796-10581:1:exon
subclass of: SO_0000010

4266843
type: Gene
SIO_000068: ncbigene

position:10581:1
position: 10581
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9796-10581:1:exon

COX3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 28829
gene: COX3
codon start: 1
transl table: 2
product: cytochrome c oxidase subunit III
translation: MAHQAHPFHMVDPSPWPLTGAAGAMLTVSGLAMWFHFHYTSLLFMGLTLLVFTVIQWWRDVVREGTFQGHHTPPVQNGLRFGMILFIASEVLFFVGFFWAFYHASLAPTVDLGNTWPPTGITPLDPFEVPLLNTAVLLASGVTVTWAHHSIMEGNRPQAIQSLALTILLGLYFTFLQAMEYYEAPFTLADGVYGTTFFVATGFHGLHVIIGTTFLIVCLLRQTEHHFTSDHHFGFEAAAWYWHFVDVVWLFLYISIYWWGS
SIO_010081: COX3
subclass of: SO_0000673
so part of: COX3
location: 9796..10581
location: region:9796-10581:1
so has part: feature:9796-10581:1:exon

YP_740273.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9796-10581:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 28829
product: tRNA-Gly
so part of: sequence
location: 10581..10649
location: region:10581-10649:1
so has part: feature:10581-10649:1:region

position:10649:1
position: 10649
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10581-10649:1:region

ND3
type: Gene
subclass of: SO_0000704
RO_0002162: 28829
gene: ND3
so part of: sequence
location: 10650..11000
location: region:10650-11000:1
so has part: feature:10650-11000:1:exon
subclass of: SO_0000010

4266847
type: Gene
SIO_000068: ncbigene

position:10650:1
position: 10650
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11000:1
position: 11000
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10650-11000:1:exon

ND3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 28829
gene: ND3
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 3
translation: MNLITTALFITLALSLILMLVAFWLPQMSPDYEKLSPYECGFDPLGFARLPFSLRFFLVAILFLLFDLEIALLLPLPWANQLTDPLTTFAWAMALLLLLTLGLAYEWAQGGLEWAE
SIO_010081: ND3
subclass of: SO_0000673
so part of: ND3
location: 10650..11000
location: region:10650-11000:1
so has part: feature:10650-11000:1:exon

YP_740274.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10650-11000:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 28829
product: tRNA-Arg
so part of: sequence
location: 10999..11067
location: region:10999-11067:1
so has part: feature:10999-11067:1:region

position:10999:1
position: 10999
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11067:1
position: 11067
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10999-11067:1:region

ND4L
type: Gene
subclass of: SO_0000704
RO_0002162: 28829
gene: ND4L
so part of: sequence
location: 11068..11364
location: region:11068-11364:1
so has part: feature:11068-11364:1:exon
subclass of: SO_0000010

4266849
type: Gene
SIO_000068: ncbigene

position:11068:1
position: 11068
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11364:1
position: 11364
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11068-11364:1:exon

ND4L
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 28829
gene: ND4L
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 4L
translation: MTPTHFAFSSAFILGLTGLAFHRSHLLSALICLEAMMVSLFIALSLWTMQLNSTNFSASPLLLLAFSACEASMGLPSLVATARTHGSDQIRNLNLLQC
SIO_010081: ND4L
subclass of: SO_0000673
so part of: ND4L
location: 11068..11364
location: region:11068-11364:1
so has part: feature:11068-11364:1:exon

YP_740275.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11068-11364:1:exon

ND4
type: Gene
subclass of: SO_0000704
RO_0002162: 28829
gene: ND4
so part of: sequence
location: 11358..12738
location: region:11358-12738:1
so has part: feature:11358-12738:1:exon
subclass of: SO_0000010

4266848
type: Gene
SIO_000068: ncbigene

position:11358:1
position: 11358
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12738:1
position: 12738
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11358-12738:1:exon

ND4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 28829
gene: ND4
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:12738,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 4
translation: MLKVLIPTLMLAPTIWLSKPKWLWPTTLAHSFLIALISLTWLQNLSESSWASLSPIMATDSISTPLLVLSCWLLPLMILASQNHMAKDPSNFQRAYISLLTSLQFFLILAFGATELIMFYVMFEATLIPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLIALLSLQGWTGTMSLLTLPFSDLAPLTPYTSMLWWAACLLAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLAAVLLKLGGYGMMRIMIMLEPLTKQLCYPFIILAMWGIIMTGSICLRQTDLKSLIAYSSVSHMGLVAGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQVILPLMAAWWFIASLANLALPPLPNLMGELTIITSLFNWSWWTLILTGAGTLITAGYSLSMFLTTQRGPLPPHILALEPSHTREHLLIALHLLPLLLLILKPELIWGWTA
SIO_010081: ND4
subclass of: SO_0000673
so part of: ND4
location: 11358..12738
location: region:11358-12738:1
so has part: feature:11358-12738:1:exon

YP_740276.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11358-12738:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 28829
product: tRNA-His
so part of: sequence
location: 12739..12807
location: region:12739-12807:1
so has part: feature:12739-12807:1:region

position:12739:1
position: 12739
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12807:1
position: 12807
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12739-12807:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 28829
product: tRNA-Ser
codon recognized: AGY
so part of: sequence
location: 12808..12875
location: region:12808-12875:1
so has part: feature:12808-12875:1:region

position:12808:1
position: 12808
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12875:1
position: 12875
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12808-12875:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 28829
product: tRNA-Leu
codon recognized: CUN
so part of: sequence
location: 12878..12950
location: region:12878-12950:1
so has part: feature:12878-12950:1:region

position:12878:1
position: 12878
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12950:1
position: 12950
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12878-12950:1:region

ND5
type: Gene
subclass of: SO_0000704
RO_0002162: 28829
gene: ND5
so part of: sequence
location: 12951..14792
location: region:12951-14792:1
so has part: feature:12951-14792:1:exon
subclass of: SO_0000010

4266850
type: Gene
SIO_000068: ncbigene

position:12951:1
position: 12951
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14792:1
position: 14792
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12951-14792:1:exon

ND5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 28829
gene: ND5
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 5
translation: MHPASIMTTSCLVIIFALLTFPLLTTLSPETQDSKWALSHVKTAVKMSFFVSLLPLFLFLTLGLEVITTSWSWMNTSTFDINISLKFDFYSIIFTPIALYVTWSILEFAAWYMSSDPHMNRFFKYLLIFLIMMITLVTANNLFQLFIGWEGVGIMSFLLIGWWYARADANTAALQAVLYNRVGDIGLIFAMAWMATNLNSWELQQIFMTSKDFDLTLPALGLILAAAGKSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLVRMSPILENSETALTTCLCLGALTTLFTATCALTQNDIKKIVAFSTSSQLGLMMVTIGLNQPQLAFLHICTHAFFKAMLFLCSGSTIHSLNNEQDIRKMGGMHHLTPFTSSSLTIGSLALTGTPFLAGFFSKDAIIEALNTSHLNAWALMLDLLATSFTAIYSLRVIFFVSMGFPRFNTLSPINENNSAVINPIKRLAWGSIIAGLLITSNFTPVKTPIMTMPLLLKLAALAVTVIGLLVALELAQLTNTQKKAVPTIPPHHFSNMLGFFPTIVHRFIPKLALTLGQTIATQVIDQTWLEKTGPKAVSSASIPLAASASNIQQGVVKTYLALFLLTLALATLAVMVK
SIO_010081: ND5
subclass of: SO_0000673
so part of: ND5
location: 12951..14792
location: region:12951-14792:1
so has part: feature:12951-14792:1:exon

YP_740277.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12951-14792:1:exon

ND6
type: Gene
subclass of: SO_0000704
RO_0002162: 28829
gene: ND6
so part of: sequence
location: complement(14785..15306)
location: region:14785-15306:-1
so has part: feature:14785-15306:-1:exon
subclass of: SO_0000010

4266851
type: Gene
SIO_000068: ncbigene

position:14785:-1
position: 14785
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15306:-1
position: 15306
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14785-15306:-1:exon

ND6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 28829
gene: ND6
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 6
translation: MDFIMYLVLFSMILGFVVIASNPSPFFGALGLVVLAGMGCGILSWHGGSFLSLVLFLIYLGGMLVVFAYSAALAADPFPESLGSRWVLISGVIYLVGVVVVSSLVCGDWYEVIWVVMDELVDFSVMRGDMGGVALMYSWGGGMLILSGGALLLTLFVVLELTRGQSRGALRSI
SIO_010081: ND6
subclass of: SO_0000673
so part of: ND6
location: complement(14785..15306)
location: region:14785-15306:-1
so has part: feature:14785-15306:-1:exon

YP_740278.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14785-15306:-1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 28829
product: tRNA-Glu
so part of: sequence
location: complement(15307..15375)
location: region:15307-15375:-1
so has part: feature:15307-15375:-1:region

position:15307:-1
position: 15307
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15375:-1
position: 15375
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15307-15375:-1:region

CYTB
type: Gene
subclass of: SO_0000704
RO_0002162: 28829
gene: CYTB
so part of: sequence
location: 15377..16517
location: region:15377-16517:1
so has part: feature:15377-16517:1:exon
subclass of: SO_0000010

4266844
type: Gene
SIO_000068: ncbigene

position:15377:1
position: 15377
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16517:1
position: 16517
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15377-16517:1:exon

CYTB
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 28829
gene: CYTB
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:16517,aa:TERM)
transl table: 2
product: cytochrome b
translation: MTSLRKSHPLIKIINSSVIDLPAPSNISAWWNFGSLLGLCLVAQIVTGLLLAMHYTADASTAFSSVVHICRDVNYGWLIRNVHANGASFFFICIYLHIGRGLYYGSYVNKETWNIGVVLLMLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYVGNTLVQWIWGGFSVDNATLTRFFTFHFLLPFILAAVTLLHLFFLHETGSNNPTGLTSAGDKVPFHPYFTYKDLLGFAVMLALLATLAMFAPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLAAILVLFAVPFLHTSKQRGMMFRPLSQFLFWTLVADVIILTWIGGMPVEDPYIVIGQIASALYFLLFLVLMPLAGWLENKALKLS
SIO_010081: CYTB
subclass of: SO_0000673
so part of: CYTB
location: 15377..16517
location: region:15377-16517:1
so has part: feature:15377-16517:1:exon

YP_740279.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15377-16517:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 28829
product: tRNA-Thr
so part of: sequence
location: 16518..16589
location: region:16518-16589:1
so has part: feature:16518-16589:1:region

position:16518:1
position: 16518
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16589:1
position: 16589
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16518-16589:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 28829
product: tRNA-Pro
so part of: sequence
location: complement(16589..16659)
location: region:16589-16659:-1
so has part: feature:16589-16659:-1:region

position:16589:-1
position: 16589
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16659:-1
position: 16659
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16589-16659:-1:region