Methylophaga pinxianii strain TMB1265 plasmid pWTT2411, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Methylophaga.
Methylophaga pinxianii sp. nov., isolated from the Mariana Trench
Submitted (12-APR-2022) Quanzhexue Lab, Fudan University, Xinjiangwancheng, Shanghai 200438, China
Submitted (07-OCT-2021) Quanzhexue Lab, Fudan University, Xinjiangwancheng, Shanghai 200438, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP095734.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: VELVET and Unicycler-5.0 hybrid assembly\n v. 1.2.10 and 5.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 60 and 44x\nSequencing Technology :: Illumina NovaSeq and Oxford Nanopore\n GridION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 06/15/2023 05:11:12\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,148\nCDSs (total) :: 3,094\nGenes (coding) :: 3,068\nCDSs (with protein) :: 3,068\nGenes (RNA) :: 54\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 41\nncRNAs :: 4\nPseudo Genes (total) :: 26\nCDSs (without protein) :: 26\nPseudo Genes (ambiguous residues) :: 0 of 26\nPseudo Genes (frameshifted) :: 5 of 26\nPseudo Genes (incomplete) :: 22 of 26\nPseudo Genes (internal stop) :: 3 of 26\nPseudo Genes (multiple problems) :: 4 of 26\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018575158.1
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF024673.2
COORDINATES: similar to AA sequence:RefSeq:WP_005495506.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013677.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - DNA transposition [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020161016.1
GO:0004133 - glycogen debranching enzyme activity [Evidence IEA]
GO:0005980 - glycogen catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008177410.1
COORDINATES: similar to AA sequence:RefSeq:WP_020534844.1
COORDINATES: protein motif:HMM:NF022603.2
COORDINATES: similar to AA sequence:RefSeq:WP_011508295.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013032725.1
COORDINATES: similar to AA sequence:RefSeq:WP_017655097.1
COORDINATES: similar to AA sequence:RefSeq:WP_012586274.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011633188.1
GO:0017004 - cytochrome complex assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003149835.1
GO:0051082 - unfolded protein binding [Evidence IEA]
c-type cytochrome biogenesis protein CcmI
COORDINATES: similar to AA sequence:RefSeq:WP_011633190.1
cytochrome c-type biogenesis protein CcmH
COORDINATES: similar to AA sequence:RefSeq:WP_003149830.1
DsbE family thiol:disulfide interchange protein
COORDINATES: similar to AA sequence:RefSeq:WP_011633192.1
COORDINATES: similar to AA sequence:RefSeq:WP_015765318.1
GO:0020037 - heme binding [Evidence IEA]
GO:0017004 - cytochrome complex assembly [Evidence IEA]; GO:0017003 - protein-heme linkage [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003149824.1
GO:0017004 - cytochrome complex assembly [Evidence IEA]; GO:0015886 - heme transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020204484.1
COORDINATES: similar to AA sequence:RefSeq:WP_011633195.1
GO:0015232 - heme transmembrane transporter activity [Evidence IEA]
GO:0015886 - heme transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF010061.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0022857 - transmembrane transporter activity [Evidence IEA]
cytochrome c biogenesis heme-transporting ATPase CcmA
COORDINATES: similar to AA sequence:RefSeq:WP_001029679.1
heteromeric transposase endonuclease subunit TnsA
COORDINATES: protein motif:HMM:NF013676.2
COORDINATES: similar to AA sequence:RefSeq:WP_008251030.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013753309.1
GO:0008324 - monoatomic cation transmembrane transporter activity [Evidence IEA]
GO:0006812 - monoatomic cation transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF019401.2
COORDINATES: similar to AA sequence:RefSeq:WP_008968262.1
COORDINATES: similar to AA sequence:RefSeq:WP_016356849.1
COORDINATES: protein motif:HMM:NF012402.2
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
2Fe-2S iron-sulfur cluster-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_012801229.1
COORDINATES: similar to AA sequence:RefSeq:WP_011468415.1
GO:0008168 - methyltransferase activity [Evidence IEA]
isoprenylcysteine carboxylmethyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012516869.1
COORDINATES: similar to AA sequence:RefSeq:WP_011800664.1
GO:0042625 - ATPase-coupled ion transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008930107.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008295154.1
COORDINATES: similar to AA sequence:RefSeq:WP_004589262.1
GO:0009279 - cell outer membrane [Evidence IEA]
GO:0005507 - copper ion binding [Evidence IEA]
GO:0006878 - intracellular copper ion homeostasis [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014292625.1
twin-arginine translocation signal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018416565.1
heavy metal response regulator transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_018416566.1
GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]; GO:0004673 - protein histidine kinase activity [Evidence IEA]; GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0016310 - phosphorylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013367848.1
GDCCVxC domain-containing (seleno)protein
COORDINATES: similar to AA sequence:RefSeq:WP_018416567.1
GO:0045340 - mercury ion binding [Evidence IEA]
mercury resistance system periplasmic binding protein MerP
COORDINATES: similar to AA sequence:RefSeq:WP_018416568.1
mercuric transporter MerT family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018416569.1
GO:0001228 - DNA-binding transcription activator activity, RNA polymerase II-specific [Evidence IEA]
Hg(II)-responsive transcriptional regulator
COORDINATES: protein motif:HMM:TIGR03505.1
COORDINATES: protein motif:HMM:NF012652.2
COORDINATES: protein motif:HMM:NF019575.2
GO:0005886 - plasma membrane [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02532.1
prepilin-type N-terminal cleavage/methylation domain-containing protein
COORDINATES: protein motif:HMM:NF012694.2
type II secretion system F family protein
COORDINATES: similar to AA sequence:RefSeq:WP_020396448.1
GO:0009306 - protein secretion [Evidence IEA]
COORDINATES: protein motif:HMM:NF012485.2
COORDINATES: protein motif:HMM:NF017973.2
COORDINATES: protein motif:HMM:NF022792.2
COORDINATES: protein motif:HMM:NF018381.2
COORDINATES: protein motif:HMM:NF019348.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024117.2
COORDINATES: similar to AA sequence:RefSeq:WP_007146197.1
GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]; GO:0006351 - DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005312113.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]; GO:0009035 - type I site-specific deoxyribonuclease activity [Evidence IEA]
type I restriction endonuclease subunit R
COORDINATES: similar to AA sequence:RefSeq:WP_009670562.1
virulence protein RhuM/Fic/DOC family protein
COORDINATES: similar to AA sequence:RefSeq:WP_001293038.1
GO:0006304 - DNA modification [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005372188.1
GO:0015666 - restriction endodeoxyribonuclease activity [Evidence IEA]; GO:0009007 - site-specific DNA-methyltransferase (adenine-specific) activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]; GO:0009307 - DNA restriction-modification system [Evidence IEA]
type I restriction-modification system subunit M
COORDINATES: protein motif:HMM:NF017300.2
GO:0006274 - DNA replication termination [Evidence IEA]
DNA replication terminus site-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_001278583.1
COORDINATES: similar to AA sequence:RefSeq:WP_012700209.1
COORDINATES: protein motif:HMM:NF013235.2
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006270 - DNA replication initiation [Evidence IEA]
RepB family plasmid replication initiator protein
COORDINATES: similar to AA sequence:RefSeq:WP_018390381.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008290546.1
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008290631.1
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_014705625.1
GO:0051139 - metal cation:proton antiporter activity [Evidence IEA]
CusA/CzcA family heavy metal efflux RND transporter
COORDINATES: protein motif:HMM:NF016370.2
COORDINATES: similar to AA sequence:RefSeq:WP_017408490.1
COORDINATES: similar to AA sequence:RefSeq:WP_008290404.1
COORDINATES: similar to AA sequence:RefSeq:WP_008290475.1
COORDINATES: similar to AA sequence:RefSeq:WP_019604660.1
COORDINATES: similar to AA sequence:RefSeq:WP_008290390.1
cation diffusion facilitator family transporter
COORDINATES: similar to AA sequence:RefSeq:WP_008290945.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004143 - ATP-dependent diacylglycerol kinase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
GO:0006654 - phosphatidic acid biosynthetic process [Evidence IEA]; GO:0008654 - phospholipid biosynthetic process [Evidence IEA]; GO:0016310 - phosphorylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014707174.1
GO:0008484 - sulfuric ester hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004587124.1
four-helix bundle copper-binding protein
COORDINATES: protein motif:HMM:NF013067.2
COORDINATES: similar to AA sequence:RefSeq:WP_007647716.1
COORDINATES: similar to AA sequence:RefSeq:WP_008296005.1
COORDINATES: similar to AA sequence:RefSeq:WP_019441303.1
GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018624924.1
COORDINATES: similar to AA sequence:RefSeq:WP_008171257.1
COORDINATES: protein motif:HMM:NF012621.2
GO:0046872 - metal ion binding [Evidence IEA]
heavy metal-associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019603399.1
COORDINATES: similar to AA sequence:RefSeq:WP_011234472.1
internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:TIGR01730.1
GO:0005215 - transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006911939.1
GO:0051920 - peroxiredoxin activity [Evidence IEA]; GO:0008379 - thioredoxin peroxidase activity [Evidence IEA]
GO:0098869 - cellular oxidant detoxification [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014707023.1
COORDINATES: similar to AA sequence:RefSeq:WP_014707022.1
COORDINATES: similar to AA sequence:RefSeq:WP_014707021.1
COORDINATES: similar to AA sequence:RefSeq:WP_014707020.1
COORDINATES: similar to AA sequence:RefSeq:WP_008290443.1
COORDINATES: similar to AA sequence:RefSeq:WP_004578678.1
COORDINATES: similar to AA sequence:RefSeq:WP_018403070.1
COORDINATES: similar to AA sequence:RefSeq:WP_008250295.1
COORDINATES: similar to AA sequence:RefSeq:WP_011468423.1
COORDINATES: similar to AA sequence:RefSeq:WP_015485736.1
COORDINATES: similar to AA sequence:RefSeq:WP_004588804.1
GO:0005507 - copper ion binding [Evidence IEA]; GO:0005375 - copper ion transmembrane transporter activity [Evidence IEA]
GO:0006825 - copper ion transport [Evidence IEA]
copper resistance system multicopper oxidase
COORDINATES: similar to AA sequence:RefSeq:WP_014707001.1
COORDINATES: similar to AA sequence:RefSeq:WP_018624907.1
COORDINATES: similar to AA sequence:RefSeq:WP_014706999.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612056.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008958449.1
metal/formaldehyde-sensitive transcriptional repressor
COORDINATES: similar to AA sequence:RefSeq:WP_011589749.1
CDF family Co(II)/Ni(II) efflux transporter DmeF
COORDINATES: similar to AA sequence:RefSeq:WP_011589750.1
manganese efflux pump MntP family protein
COORDINATES: nucleotide motif:Rfam:14.4:RF00080
yybP-ykoY riboswitch is a manganese riboswitch that directly binds Mn; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_014578740.1
GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]
phosphoethanolamine--lipid A transferase
COORDINATES: similar to AA sequence:RefSeq:WP_014707143.1
COORDINATES: similar to AA sequence:RefSeq:WP_014707142.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: protein motif:HMM:NF013718.2
COORDINATES: similar to AA sequence:RefSeq:WP_008223741.1
COORDINATES: similar to AA sequence:RefSeq:WP_014707139.1
COORDINATES: similar to AA sequence:RefSeq:WP_011365946.1
COORDINATES: protein motif:HMM:NF018017.2
ELM1/GtrOC1 family putative glycosyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_013442701.1
COORDINATES: similar to AA sequence:RefSeq:WP_008291030.1
GO:0016757 - glycosyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013257.2
COORDINATES: similar to AA sequence:RefSeq:WP_008290882.1
GO:0009103 - lipopolysaccharide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009516056.1
COORDINATES: similar to AA sequence:RefSeq:WP_013504665.1
GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA]
GO:0009306 - protein secretion [Evidence IEA]; GO:0006508 - proteolysis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014702287.1
COORDINATES: similar to AA sequence:RefSeq:WP_001219642.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
GO:0045893 - positive regulation of DNA-templated transcription [Evidence IEA]
Cd(II)/Pb(II)-responsive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_007233296.1
COORDINATES: similar to AA sequence:RefSeq:WP_011733949.1
GO:0008657 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) inhibitor activity [Evidence IEA]; GO:0042803 - protein homodimerization activity [Evidence IEA]
GO:0030541 - plasmid partitioning [Evidence IEA]; GO:0051290 - protein heterotetramerization [Evidence IEA]; GO:0009432 - SOS response [Evidence IEA]
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: protein motif:HMM:NF017727.2
COORDINATES: protein motif:HMM:TIGR02376.1
GO:0050421 - nitrite reductase (NO-forming) activity [Evidence IEA]
GO:0006807 - nitrogen compound metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019557251.1
GO:0004129 - cytochrome-c oxidase activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
GO:0009060 - aerobic respiration [Evidence IEA]
cbb3-type cytochrome c oxidase subunit I
COORDINATES: similar to AA sequence:RefSeq:WP_076611291.1
GO:0015074 - DNA integration [Evidence IEA]
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_019406675.1
COORDINATES: similar to AA sequence:RefSeq:WP_014703870.1
lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:TIGR03739.1
COORDINATES: protein motif:HMM:NF019153.2
COORDINATES: similar to AA sequence:RefSeq:WP_014707155.1
molybdopterin oxidoreductase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014707156.1
4Fe-4S dicluster domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014707157.1
pyridine nucleotide-disulfide oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_009205927.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]
GO:0006777 - Mo-molybdopterin cofactor biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF014638.2
GO:0006402 - mRNA catabolic process [Evidence IEA]; GO:0006109 - regulation of carbohydrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076611583.1
COORDINATES: protein motif:HMM:NF019530.2
conjugal transfer protein TraG N-terminal domain-containing protein
COORDINATES: protein motif:HMM:TIGR03755.1
COORDINATES: similar to AA sequence:RefSeq:WP_007146070.1
TIGR03756 family integrating conjugative element protein
COORDINATES: protein motif:HMM:NF019152.2
TIGR03757 family integrating conjugative element protein
COORDINATES: similar to AA sequence:RefSeq:WP_007146068.1
GO:0005575 - cellular_component [Evidence IEA]
GO:0008150 - biological_process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03751.1
GO:0003674 - molecular_function [Evidence IEA]
TIGR03751 family conjugal transfer lipoprotein
COORDINATES: protein motif:HMM:TIGR03752.1
TIGR03752 family integrating conjugative element protein
COORDINATES: protein motif:HMM:TIGR03749.1
TIGR03749 family integrating conjugative element protein
COORDINATES: protein motif:HMM:TIGR03746.1
TIGR03746 family integrating conjugative element protein
COORDINATES: similar to AA sequence:RefSeq:WP_013818679.1
TIGR03750 family conjugal transfer protein
COORDINATES: similar to AA sequence:RefSeq:WP_007146254.1
TIGR03745 family integrating conjugative element membrane protein
COORDINATES: protein motif:HMM:TIGR03758.1
TIGR03758 family integrating conjugative element protein
COORDINATES: similar to AA sequence:RefSeq:WP_018871510.1
RAQPRD family integrative conjugative element protein
COORDINATES: protein motif:HMM:TIGR03747.1
TIGR03747 family integrating conjugative element membrane protein
COORDINATES: similar to AA sequence:RefSeq:WP_019590502.1
type IV conjugative transfer system coupling protein TraD
COORDINATES: protein motif:HMM:NF022523.2
COORDINATES: similar to AA sequence:RefSeq:WP_019933202.1
COORDINATES: protein motif:HMM:NF013618.2
transglycosylase SLT domain-containing protein
COORDINATES: protein motif:HMM:TIGR03759.1
TIGR03759 family integrating conjugative element protein
COORDINATES: protein motif:HMM:TIGR03748.1
COORDINATES: protein motif:HMM:NF022645.2
STY4526/YPO1902 family pathogenicity island replication protein
COORDINATES: similar to AA sequence:RefSeq:WP_007146243.1
COORDINATES: protein motif:HMM:NF019976.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
nuclease-related domain-containing protein
COORDINATES: protein motif:HMM:TIGR00254.1
COORDINATES: similar to AA sequence:RefSeq:WP_014706334.1
COORDINATES: similar to AA sequence:RefSeq:WP_019456230.1
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: similar to AA sequence:RefSeq:WP_014705937.1