Arsenophonus apicola strain ArsBeeUS plasmid pArsBee6, complete sequence.
type: Entry
definition: Arsenophonus apicola strain ArsBeeUS plasmid pArsBee6, complete sequence.
sequence version: NZ_CP084228.1
sequence date: 2022-09-04
sequence: sequence
division: CON
label: NZ_CP084228.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN21873137
keyword: RefSeq
source: Arsenophonus apicola
organism: Arsenophonus apicola
taxonomy: Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Morganellaceae; Arsenophonus.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP084228.1.\nBacteria and source DNA available from Pol Nadal Jimenez, Institute\nof Infection, Veterinary and Ecological Sciences, University of\nLiverpool, Ic2 Liverpool Science Park, 146 Brownlow Hill,\nLiverpool, L3 5RF, UK.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Flye v. 2.8; Pilon v. 1.23\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 49.6x\nSequencing Technology :: Oxford Nanopore MinION; Illumina MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 09/04/2022 11:51:30\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.2\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 3,553\nCDSs (total) :: 3,453\nGenes (coding) :: 3,222\nCDSs (with protein) :: 3,222\nGenes (RNA) :: 100\nrRNAs :: 8, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 8, 7, 7 (5S, 16S, 23S)\ntRNAs :: 70\nncRNAs :: 8\nPseudo Genes (total) :: 231\nCDSs (without protein) :: 231\nPseudo Genes (ambiguous residues) :: 0 of 231\nPseudo Genes (frameshifted) :: 136 of 231\nPseudo Genes (incomplete) :: 66 of 231\nPseudo Genes (internal stop) :: 64 of 231\nPseudo Genes (multiple problems) :: 33 of 231\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 30494
topology: circular
so has quality: SO_0000988
location: 1..30494
location: region:1-30494:1
RO_0002162: 2879119

NZ_CP084228
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN21873137
type: BioSample
SIO_000068: biosample

1
title: Culture and genomic analysis of Arsenophonus apicola sp. nov. isolated from the honeybee Apis mellifera
author: Nadal-Jimenez, P.
author: Siozios, S.
author: Frost, C.L.
author: Court, R.
author: Chrostek, E.
author: Drew, G.C.
author: Evans, J.D.
author: Hawthorne, D.J.
author: Burritt, J.B.
author: Hurst, G.D.D.
journal: Unpublished

2
title: Direct Submission
author: Siozios, S.
author: Frost, C.L.
author: Nadal-Jimenez, P.
author: Burritt, J.B.
author: Hurst, G.D.D.
journal: Submitted (27-SEP-2021) Evolution, Ecology and Behaviour, University of Liverpool, Crown Street, Biosciences building, Liverpool L69 7ZB, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:30494:1
position: 30494
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-30494:1:source
so part of: sequence
organism: Arsenophonus apicola
mol type: genomic DNA
strain: ArsBeeUS
isolation source: hemolymph
host: Apis mellifera
type material: type strain of Arsenophonus apicola
plasmid: pArsBee6
country: USA: Dunn County Wisconsin
lat lon: 44.952830 N 91.887010 W
collection date: 2016

2879119
type: Taxonomy
SIO_000068: taxonomy

LDL57_RS17485
type: Gene
subclass of: SO_0000704
RO_0002162: 2879119
locus tag: LDL57_RS17485
old locus tag: LDL57_17485
so part of: sequence
location: 80..277
location: region:80-277:1
so has part: feature:80-277:1:exon
subclass of: SO_0000010

position:80:1
position: 80
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:277:1
position: 277
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:80-277:1:exon

LDL57_RS17485
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2879119
locus tag: LDL57_RS17485
old locus tag: LDL57_17485
inference: COORDINATES: protein motif:HMM:NF024835.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix transcriptional regulator
translation: MNWSKAILQLKAKSGVQTNKDLYEKAGVTPSAFAAIKKGTATFKNVEKLCSAWGIKPSEFISWGE
SIO_010081: LDL57_RS17485
subclass of: SO_0000673
so part of: LDL57_RS17485
location: 80..277
location: region:80-277:1
so has part: feature:80-277:1:exon

WP_225508033.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:80-277:1:exon

LDL57_RS17490
type: Gene
subclass of: SO_0000704
RO_0002162: 2879119
locus tag: LDL57_RS17490
old locus tag: LDL57_17490
so part of: sequence
location: 726..1781
location: region:726-1781:1
so has part: feature:726-1781:1:exon
subclass of: SO_0000010

position:726:1
position: 726
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1781:1
position: 1781
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:726-1781:1:exon

LDL57_RS17490
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2879119
locus tag: LDL57_RS17490
old locus tag: LDL57_17490
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015981331.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein
translation: MTPWQDENKKLIVHSNDLITARYNLDIDGFRALTLFLSKVNQRLENPGWISFSAHEFQVTFDINKKNIWRCMKKAVTSLSKSQITFHVINGKKESFTVLNWLSGYKYQKIEGKGTGLKLRLNPDLDPFLFNIKHNFSWCFLNAITSVKNVISFRIYMYLLSHKSHPRCKKNNFFEVDISLDDFHELFPDASSRFDNLKKRTIEPAIQDINEHTNISVHWEPIKHGRSVVGMRFGCVEEKSTAIQPKRPRLAKRPHVKSGSHDEGQWMKKNAEILYQYEKDLKKYDPTLRLTMPDLRRAVECSKYCKQHWHEEKKQELAMREGKNTKIAVAKSEQNKDITFSEKDLELIQNI
SIO_010081: LDL57_RS17490
subclass of: SO_0000673
so part of: LDL57_RS17490
location: 726..1781
location: region:726-1781:1
so has part: feature:726-1781:1:exon

WP_225508053.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:726-1781:1:exon

LDL57_RS17495
type: Gene
subclass of: SO_0000704
RO_0002162: 2879119
locus tag: LDL57_RS17495
old locus tag: LDL57_17495
so part of: sequence
location: 1778..2113
location: region:1778-2113:1
so has part: feature:1778-2113:1:exon
subclass of: SO_0000010

position:1778:1
position: 1778
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2113:1
position: 2113
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1778-2113:1:exon

LDL57_RS17495
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2879119
locus tag: LDL57_RS17495
old locus tag: LDL57_17495
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007727572.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TM2 domain-containing protein
translation: MNTNTKTKESESNMIYCSGCGKAIHETAPTCPNCGAINKNVEVTGTKSRVAAAVLAFFLGGFGIHKFYLGKILQGFLYLIFCWTFIPTVIAFIEFIVYLCMSDQDFAKKYG
SIO_010081: LDL57_RS17495
subclass of: SO_0000673
so part of: LDL57_RS17495
location: 1778..2113
location: region:1778-2113:1
so has part: feature:1778-2113:1:exon

WP_225508035.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1778-2113:1:exon

LDL57_RS17500
type: Gene
subclass of: SO_0000704
RO_0002162: 2879119
locus tag: LDL57_RS17500
old locus tag: LDL57_17500
so part of: sequence
location: 2158..2430
location: region:2158-2430:1
so has part: feature:2158-2430:1:exon
subclass of: SO_0000010

position:2158:1
position: 2158
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2430:1
position: 2430
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2158-2430:1:exon

LDL57_RS17500
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2879119
locus tag: LDL57_RS17500
old locus tag: LDL57_17500
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010865085.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: HU family DNA-binding protein
translation: MNKTELISKVAEKSGLSKKDAEKAVNAFIEAVTESLKSGNDVQLIGFGSFQVKQRAARDGKNPKTGKPLKIAAANVPSFKAGQRLKEAVK
SIO_010081: LDL57_RS17500
subclass of: SO_0000673
so part of: LDL57_RS17500
location: 2158..2430
location: region:2158-2430:1
so has part: feature:2158-2430:1:exon

WP_255653940.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2158-2430:1:exon

LDL57_RS17505
type: Gene
subclass of: SO_0000704
RO_0002162: 2879119
locus tag: LDL57_RS17505
old locus tag: LDL57_17505
so part of: sequence
location: 2434..2706
location: region:2434-2706:1
so has part: feature:2434-2706:1:exon
subclass of: SO_0000010

position:2434:1
position: 2434
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2706:1
position: 2706
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2434-2706:1:exon

LDL57_RS17505
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2879119
locus tag: LDL57_RS17505
old locus tag: LDL57_17505
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001419705.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTYDAKSIRILREDEIKQFDWHWAEELAHEHILPLDWVKRGFEASRRLGIEPDFFVSKYILKQDLPKNDEFEQVFIEVLKEDRKKSQNTL
SIO_010081: LDL57_RS17505
subclass of: SO_0000673
so part of: LDL57_RS17505
location: 2434..2706
location: region:2434-2706:1
so has part: feature:2434-2706:1:exon

WP_180558380.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2434-2706:1:exon

LDL57_RS17510
type: Gene
subclass of: SO_0000704
RO_0002162: 2879119
locus tag: LDL57_RS17510
old locus tag: LDL57_17510
so part of: sequence
location: 3062..3697
location: region:3062-3697:1
so has part: feature:3062-3697:1:exon
subclass of: SO_0000010

position:3062:1
position: 3062
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3697:1
position: 3697
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3062-3697:1:exon

LDL57_RS17510
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2879119
locus tag: LDL57_RS17510
old locus tag: LDL57_17510
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019454356.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: AAA family ATPase
translation: MIVLIGSQKGGCGKSTISVNIAAELAKQKKDVILVDSDRQGTSANWISDRNKQVEIPIIHCIQKFDNVRETLLDLDKRYEFVIVDTAGRDSRELRTGMTTADILLVPFRPSQPDLDTLPRLVEIITEAKDINPKLKTIAMLTLAPTNPVINEIHEAQEYLKDYPELLLMNTVVRDRKVYRDCMGEGKGVIEMGNLKAKNEIQYLVKELLTW
SIO_010081: LDL57_RS17510
subclass of: SO_0000673
so part of: LDL57_RS17510
location: 3062..3697
location: region:3062-3697:1
so has part: feature:3062-3697:1:exon

WP_180558379.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3062-3697:1:exon

LDL57_RS17515
type: Gene
subclass of: SO_0000704
RO_0002162: 2879119
locus tag: LDL57_RS17515
old locus tag: LDL57_17515
so part of: sequence
location: 3691..3936
location: region:3691-3936:1
so has part: feature:3691-3936:1:exon
subclass of: SO_0000010

position:3691:1
position: 3691
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3936:1
position: 3936
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3691-3936:1:exon

LDL57_RS17515
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2879119
locus tag: LDL57_RS17515
old locus tag: LDL57_17515
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015873531.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MVKRRFPNSVEKKIEEFASAADQMIKQKNELNSEARRDYKALRVPFNQYEYELLERLCKKTKRSKLNMIRYALKYYDENDV
SIO_010081: LDL57_RS17515
subclass of: SO_0000673
so part of: LDL57_RS17515
location: 3691..3936
location: region:3691-3936:1
so has part: feature:3691-3936:1:exon

WP_180558378.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3691-3936:1:exon

LDL57_RS17520
type: Gene
subclass of: SO_0000704
RO_0002162: 2879119
locus tag: LDL57_RS17520
old locus tag: LDL57_17520
so part of: sequence
location: 4485..4763
location: region:4485-4763:1
so has part: feature:4485-4763:1:exon
subclass of: SO_0000010

position:4485:1
position: 4485
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4763:1
position: 4763
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4485-4763:1:exon

LDL57_RS17520
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2879119
locus tag: LDL57_RS17520
old locus tag: LDL57_17520
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPQEIIFKESKRNAKIRREIRKIEFLAKKDAEREFNQKLKKAFWRHENPRQQLRDFQRQIVVYANLFMDHRKKQQKQKIIAQRAHIDALFLN
SIO_010081: LDL57_RS17520
subclass of: SO_0000673
so part of: LDL57_RS17520
location: 4485..4763
location: region:4485-4763:1
so has part: feature:4485-4763:1:exon

WP_225508037.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4485-4763:1:exon

LDL57_RS17525
type: Gene
subclass of: SO_0000704
RO_0002162: 2879119
locus tag: LDL57_RS17525
old locus tag: LDL57_17525
so part of: sequence
location: 4920..5132
location: region:4920-5132:1
so has part: feature:4920-5132:1:exon
subclass of: SO_0000010

position:4920:1
position: 4920
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5132:1
position: 5132
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4920-5132:1:exon

LDL57_RS17525
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2879119
locus tag: LDL57_RS17525
old locus tag: LDL57_17525
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006658966.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: phage holin family protein
translation: MEKYSSPLSYLWAGATTAIGILTLEQWVAVVGIVCTIGTFLINVYYRKKEYKLKERQYENTEKNIDGNRR
SIO_010081: LDL57_RS17525
subclass of: SO_0000673
so part of: LDL57_RS17525
location: 4920..5132
location: region:4920-5132:1
so has part: feature:4920-5132:1:exon

WP_225508057.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4920-5132:1:exon

LDL57_RS17530
type: Gene
subclass of: SO_0000704
RO_0002162: 2879119
locus tag: LDL57_RS17530
old locus tag: LDL57_17530
so part of: sequence
location: 5092..5574
location: region:5092-5574:1
so has part: feature:5092-5574:1:exon
subclass of: SO_0000010

position:5092:1
position: 5092
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5574:1
position: 5574
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5092-5574:1:exon

LDL57_RS17530
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2879119
locus tag: LDL57_RS17530
old locus tag: LDL57_17530
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004918815.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: lysozyme
translation: MKIPKKILMAIGGSALLLASSMITHFEGLRLKPYFDGGGVLSVCYGHTGNDIHRNRTYTQEDCDKWLDDDLKVVKRYVDPLVKVNINTLTQAALYSFAYNVGVGNFAKSTLLKKLNADDRKGACEEMKRWVYVDGRKWKGLMTRREIESVICQGDLTHLA
SIO_010081: LDL57_RS17530
subclass of: SO_0000673
so part of: LDL57_RS17530
location: 5092..5574
location: region:5092-5574:1
so has part: feature:5092-5574:1:exon

WP_225508039.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5092-5574:1:exon

LDL57_RS17535
type: Gene
subclass of: SO_0000704
RO_0002162: 2879119
locus tag: LDL57_RS17535
old locus tag: LDL57_17535
so part of: sequence
location: 5544..5924
location: region:5544-5924:1
so has part: feature:5544-5924:1:exon
subclass of: SO_0000010

position:5544:1
position: 5544
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5924:1
position: 5924
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5544-5924:1:exon

LDL57_RS17535
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2879119
locus tag: LDL57_RS17535
old locus tag: LDL57_17535
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012990251.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSRRPYAFGVVIIAGLIVWASWLLTSLNEVKALNKNLTIDLDKQIAITTNAFQSMKVINDIARINSETRQRKAVDSEATQAAIKAHVVHQDCANRIIPHGAIVELQQHTKRIRSDASHSDTPLPTR
SIO_010081: LDL57_RS17535
subclass of: SO_0000673
so part of: LDL57_RS17535
location: 5544..5924
location: region:5544-5924:1
so has part: feature:5544-5924:1:exon

WP_180560432.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5544-5924:1:exon

LDL57_RS17540
type: Gene
subclass of: SO_0000704
RO_0002162: 2879119
locus tag: LDL57_RS17540
old locus tag: LDL57_17540
so part of: sequence
location: 6110..6529
location: region:6110-6529:1
so has part: feature:6110-6529:1:exon
subclass of: SO_0000010

position:6110:1
position: 6110
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6529:1
position: 6529
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6110-6529:1:exon

LDL57_RS17540
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2879119
locus tag: LDL57_RS17540
old locus tag: LDL57_17540
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSSIKLINTRHGCDVIRVHFENAVGRFHKSFKTLDPACRFLFLSESERFLSMTAKEKEQCRDWPLRKLIQFYVGKKVSQCETGHLRQSSLDTIKHALFSIDETLQAKLTSSPTFTLRDSGGGFPLVGDYLIAQKPGSCC
SIO_010081: LDL57_RS17540
subclass of: SO_0000673
so part of: LDL57_RS17540
location: 6110..6529
location: region:6110-6529:1
so has part: feature:6110-6529:1:exon

WP_225508041.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6110-6529:1:exon

LDL57_RS17545
type: Gene
subclass of: SO_0000704
RO_0002162: 2879119
locus tag: LDL57_RS17545
old locus tag: LDL57_17545
pseudo: true
so part of: sequence
location: complement(6482..7709)
location: region:6482-7709:-1
so has part: feature:6482-7709:-1:exon
subclass of: SO_0000010

position:6482:-1
position: 6482
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7709:-1
position: 7709
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6482-7709:-1:exon

LDL57_RS17545
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2879119
locus tag: LDL57_RS17545
old locus tag: LDL57_17545
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020308204.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: transposase
SIO_010081: LDL57_RS17545
subclass of: SO_0000673
so part of: LDL57_RS17545
location: complement(6482..7709)
location: region:6482-7709:-1
so has part: feature:6482-7709:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6482-7709:-1:exon

LDL57_RS17550
type: Gene
subclass of: SO_0000704
RO_0002162: 2879119
gene: tnpA
locus tag: LDL57_RS17550
old locus tag: LDL57_17550
so part of: sequence
location: 7768..8172
location: region:7768-8172:1
so has part: feature:7768-8172:1:exon
subclass of: SO_0000010

position:7768:1
position: 7768
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8172:1
position: 8172
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7768-8172:1:exon

LDL57_RS17550
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2879119
gene: tnpA
locus tag: LDL57_RS17550
old locus tag: LDL57_17550
inference: COORDINATES: similar to AA sequence:RefSeq:WP_021141233.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS200/IS605 family transposase
translation: MQKYKINRSRHAAFLLHVHLVFVTKYRKKVLSGLHYKAFHQYAGEVCRDFGADLKESNGESDHVHMLIEYPPTVQLSVLVNSLKAVTSRRLRNEFLDLRGAYGKPVLWSRSYFAGSCGGAPLEVVKQYIQNQRG
SIO_010081: LDL57_RS17550
subclass of: SO_0000673
so part of: LDL57_RS17550
location: 7768..8172
location: region:7768-8172:1
so has part: feature:7768-8172:1:exon

WP_225505529.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7768-8172:1:exon

LDL57_RS17555
type: Gene
subclass of: SO_0000704
RO_0002162: 2879119
locus tag: LDL57_RS17555
old locus tag: LDL57_17555
so part of: sequence
location: 8250..8924
location: region:8250-8924:1
so has part: feature:8250-8924:1:exon
subclass of: SO_0000010

position:8250:1
position: 8250
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8924:1
position: 8924
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8250-8924:1:exon

LDL57_RS17555
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2879119
locus tag: LDL57_RS17555
old locus tag: LDL57_17555
inference: COORDINATES: protein motif:HMM:NF012798.2
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tyrosine-type recombinase/integrase
translation: MALNIRPSEFNGLPENTLKHLHSAYLLLKAMRNIGVSPIPKLKKKVKKPIFIPAFGNVEEMIKQSPVREKITFILASKLGLRISEILALDYSDIREQRIYISKHLTRYGIVNLGMKADLQRILPLPKDLKQFLDKEKRGKPIPLLMSDRQSRLSLTYGRSGIIKKRLLEYEIGTFHNLRHFAAISLIQRGYGINVVSKMLGHQSIKITHDTYGRFCRSVLDIEI
SIO_010081: LDL57_RS17555
subclass of: SO_0000673
so part of: LDL57_RS17555
location: 8250..8924
location: region:8250-8924:1
so has part: feature:8250-8924:1:exon

WP_225508043.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8250-8924:1:exon

LDL57_RS17560
type: Gene
subclass of: SO_0000704
RO_0002162: 2879119
locus tag: LDL57_RS17560
old locus tag: LDL57_17560
so part of: sequence
location: 9187..9774
location: region:9187-9774:1
so has part: feature:9187-9774:1:exon
subclass of: SO_0000010

position:9187:1
position: 9187
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9774:1
position: 9774
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9187-9774:1:exon

LDL57_RS17560
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2879119
locus tag: LDL57_RS17560
old locus tag: LDL57_17560
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSRKAKYQKAYIDDVINLSLVKGKVSNHFIAKWLHVDEKTVRNWRKDYCEFDHAFHHAADILKKEIAETARQNTKMRTRKIIKKTPVGETTTIEEVLPSHNDIAVYKKMGINEVFFNEEKQQQKEYLRSILERKKTGEMTALEAAQFLEIEGIPVPNTLLLEIKQSSNFNESEDIFPSVIHVNAGSFSNDERNSN
SIO_010081: LDL57_RS17560
subclass of: SO_0000673
so part of: LDL57_RS17560
location: 9187..9774
location: region:9187-9774:1
so has part: feature:9187-9774:1:exon

WP_180560434.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9187-9774:1:exon

LDL57_RS17565
type: Gene
subclass of: SO_0000704
RO_0002162: 2879119
locus tag: LDL57_RS17565
old locus tag: LDL57_17565
pseudo: true
so part of: sequence
location: 9752..10976
location: region:9752-10976:1
so has part: feature:9752-10976:1:exon
subclass of: SO_0000010

position:9752:1
position: 9752
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10976:1
position: 10976
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9752-10976:1:exon

LDL57_RS17565
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2879119
locus tag: LDL57_RS17565
old locus tag: LDL57_17565
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016257341.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: PBSX family phage terminase large subunit
SIO_010081: LDL57_RS17565
subclass of: SO_0000673
so part of: LDL57_RS17565
location: 9752..10976
location: region:9752-10976:1
so has part: feature:9752-10976:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9752-10976:1:exon

LDL57_RS17570
type: Gene
subclass of: SO_0000704
RO_0002162: 2879119
locus tag: LDL57_RS17570
old locus tag: LDL57_17570
so part of: sequence
location: 11104..11709
location: region:11104-11709:1
so has part: feature:11104-11709:1:exon
subclass of: SO_0000010

position:11104:1
position: 11104
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11709:1
position: 11709
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11104-11709:1:exon

LDL57_RS17570
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2879119
locus tag: LDL57_RS17570
old locus tag: LDL57_17570
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009351668.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MSRVFAYCRVSTLEQTTENQRREIEAAGFNIKPHRIVEENVSGSVAANERNGFVRLTDRLEPDDILVVTKLDRLGRNAIDIRKTVENLASLGVKVHCLALGGVDLTSPAGKMTMQVISAVAEFERDLLIERTQAGIVRAKAQGKKLGRPRSLDDKQREEVILHLKNGQSISSLAKIFNTTRQTIMRIRDAEFATAKYGVPA
SIO_010081: LDL57_RS17570
subclass of: SO_0000673
so part of: LDL57_RS17570
location: 11104..11709
location: region:11104-11709:1
so has part: feature:11104-11709:1:exon

WP_180560436.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11104-11709:1:exon

LDL57_RS17575
type: Gene
subclass of: SO_0000704
RO_0002162: 2879119
locus tag: LDL57_RS17575
old locus tag: LDL57_17575
so part of: sequence
location: complement(11771..12052)
location: region:11771-12052:-1
so has part: feature:11771-12052:-1:exon
subclass of: SO_0000010

position:11771:-1
position: 11771
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12052:-1
position: 12052
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11771-12052:-1:exon

LDL57_RS17575
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2879119
locus tag: LDL57_RS17575
old locus tag: LDL57_17575
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011145233.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: HigA family addiction module antitoxin
translation: MTRMYNPSHPGIVLREYLSHVSVTEAAKALGVTRVSLSRILNGNSGISADMALRLERAIGTSAEMWIEMQTQYELWQASQKPRPEVHRLLPQS
SIO_010081: LDL57_RS17575
subclass of: SO_0000673
so part of: LDL57_RS17575
location: complement(11771..12052)
location: region:11771-12052:-1
so has part: feature:11771-12052:-1:exon

WP_180560437.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11771-12052:-1:exon

LDL57_RS17580
type: Gene
subclass of: SO_0000704
RO_0002162: 2879119
locus tag: LDL57_RS17580
old locus tag: LDL57_17580
so part of: sequence
location: complement(12060..12341)
location: region:12060-12341:-1
so has part: feature:12060-12341:-1:exon
subclass of: SO_0000010

position:12060:-1
position: 12060
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12341:-1
position: 12341
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12060-12341:-1:exon

LDL57_RS17580
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2879119
locus tag: LDL57_RS17580
old locus tag: LDL57_17580
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004085174.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelE/ParE family toxin
translation: MIKNFRHKGIERFFKTGVTSGIQAKHAVKLRVQLTALNVAKKPSDMSAPSWKLHPLKGESLKGHWAISVNGNWRLTFKFEGEDVILVDYQDYH
SIO_010081: LDL57_RS17580
subclass of: SO_0000673
so part of: LDL57_RS17580
location: complement(12060..12341)
location: region:12060-12341:-1
so has part: feature:12060-12341:-1:exon

WP_135678479.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12060-12341:-1:exon

LDL57_RS17585
type: Gene
subclass of: SO_0000704
RO_0002162: 2879119
locus tag: LDL57_RS17585
old locus tag: LDL57_17585
so part of: sequence
location: 12411..13796
location: region:12411-13796:1
so has part: feature:12411-13796:1:exon
subclass of: SO_0000010

position:12411:1
position: 12411
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13796:1
position: 13796
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12411-13796:1:exon

LDL57_RS17585
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2879119
locus tag: LDL57_RS17585
old locus tag: LDL57_17585
inference: COORDINATES: protein motif:HMM:NF018125.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF1073 domain-containing protein
translation: MFLSLKRKKSPQKLADGGLDNLMREVNAIGSSTTTLPSSFAALGITGAGYFETDKGLAWLYERVSIVRKYINKTSGDCIKHWRTVRFTGDDEERTEQLNDVFTGEEKRLNIKKHAELSLKLASLYGGSLLIAVTDEENLEKPLNVNNEQLKGFLVVRQGEYRIRKIATNIFSPCFNKPLLFELKSDEKILVHHSRCCLTVVNQITNSTVRANEKANDGKSDILAFIADLLGYLYVNDEVLGMLREMKSDIFLLKDLNTGITNGRGKEIIDWLQLVLQAKKRHNVLMLDADSQYEQKELSLANVSDIWTKAQDRLAIAMDRPKTILFGDGAAGFSTGQEDLQSYYDTIFKIQESRLRPIINFFDKFICAKHGISETEVAFEFVQIITENKAESATNLNTVTTALMLLLEHGVIEPQDALNELNRRELVDVKNVPEVTMMANMLGEEDDREFTTQGKINGEGV
SIO_010081: LDL57_RS17585
subclass of: SO_0000673
so part of: LDL57_RS17585
location: 12411..13796
location: region:12411-13796:1
so has part: feature:12411-13796:1:exon

WP_225508045.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12411-13796:1:exon

LDL57_RS17590
type: Gene
subclass of: SO_0000704
RO_0002162: 2879119
locus tag: LDL57_RS17590
old locus tag: LDL57_17590
so part of: sequence
location: 13753..14730
location: region:13753-14730:1
so has part: feature:13753-14730:1:exon
subclass of: SO_0000010

position:13753:1
position: 13753
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14730:1
position: 14730
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13753-14730:1:exon

LDL57_RS17590
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2879119
locus tag: LDL57_RS17590
old locus tag: LDL57_17590
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015873870.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Rpn family recombination-promoting nuclease/putative transposase
translation: MNLPPKGKLTGRECKKFTPTPHDSLFKQFLSEKETAKDFFTIWLPDEIKSLCDLNSLKLESGSFIDSEMKNYQSDILYSVKTTKGKGYFYLLIEHQSTPDKLMAWRLMRYCMGAMQKHLEAGHKKLPLVFPILFYTGEKSPYPYSTDWFDCFSGRDIAEKIYTKPFKLVDVTTLNDGEIMQHKRMALLELVQKHIRRRDMTELLSEIVKLLSYNYYSDNQVITLFNYLIQEGNAKRPMEFITEIAKQSEKHEGALMTIAQQIEQMGIQKGKLEGMQEGIQKGKLEGEKQASLKIARQMLESGMDRQSVMKFTSLTDSELKNLFKD
SIO_010081: LDL57_RS17590
subclass of: SO_0000673
so part of: LDL57_RS17590
location: 13753..14730
location: region:13753-14730:1
so has part: feature:13753-14730:1:exon

WP_225508047.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13753-14730:1:exon

LDL57_RS17595
type: Gene
subclass of: SO_0000704
RO_0002162: 2879119
locus tag: LDL57_RS17595
old locus tag: LDL57_17595
so part of: sequence
location: 14732..14890
location: region:14732-14890:1
so has part: feature:14732-14890:1:exon
subclass of: SO_0000010

position:14732:1
position: 14732
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14890:1
position: 14890
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14732-14890:1:exon

LDL57_RS17595
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2879119
locus tag: LDL57_RS17595
old locus tag: LDL57_17595
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTERQKLSLNRPRRASEEMTPKSSPVYRKKVWVNPTPIKQVKNQNPKSLLSQ
SIO_010081: LDL57_RS17595
subclass of: SO_0000673
so part of: LDL57_RS17595
location: 14732..14890
location: region:14732-14890:1
so has part: feature:14732-14890:1:exon

WP_225508049.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14732-14890:1:exon

LDL57_RS17600
type: Gene
subclass of: SO_0000704
RO_0002162: 2879119
locus tag: LDL57_RS17600
old locus tag: LDL57_17600
so part of: sequence
location: 14887..15228
location: region:14887-15228:1
so has part: feature:14887-15228:1:exon
subclass of: SO_0000010

position:14887:1
position: 14887
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15228:1
position: 15228
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14887-15228:1:exon

LDL57_RS17600
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2879119
locus tag: LDL57_RS17600
old locus tag: LDL57_17600
inference: COORDINATES: protein motif:HMM:NF016255.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ProQ/FINO family protein
translation: MTQKRVVKPQPVVKVKIPKPPKPPKKRLPLAEAISQISIFWPALFPEHQLRPMKIGIQQDMWQEVKEKCLPITRRRLRACLGSIGHHANYRALIHCSTAPQTPKINIKSRHDI
SIO_010081: LDL57_RS17600
subclass of: SO_0000673
so part of: LDL57_RS17600
location: 14887..15228
location: region:14887-15228:1
so has part: feature:14887-15228:1:exon

WP_225508051.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14887-15228:1:exon

LDL57_RS17605
type: Gene
subclass of: SO_0000704
RO_0002162: 2879119
locus tag: LDL57_RS17605
old locus tag: LDL57_17605
pseudo: true
so part of: sequence
location: complement(15547..>15879)
location: region:15547-15879:-1
so has part: feature:15547-15879:-1:exon
subclass of: SO_0000010

position:15547:-1
position: 15547
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15879:-1
position: 15879
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15547-15879:-1:exon

LDL57_RS17605
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2879119
locus tag: LDL57_RS17605
old locus tag: LDL57_17605
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001556711.1
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: recombinase family protein
SIO_010081: LDL57_RS17605
subclass of: SO_0000673
so part of: LDL57_RS17605
location: complement(15547..>15879)
location: region:15547-15879:-1
so has part: feature:15547-15879:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:15547-15879:-1:exon

LDL57_RS17610
type: Gene
subclass of: SO_0000704
RO_0002162: 2879119
locus tag: LDL57_RS17610
old locus tag: LDL57_17610
pseudo: true
so part of: sequence
location: complement(15922..>16201)
location: region:15922-16201:-1
so has part: feature:15922-16201:-1:exon
subclass of: SO_0000010

position:15922:-1
position: 15922
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16201:-1
position: 16201
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15922-16201:-1:exon

LDL57_RS17610
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2879119
locus tag: LDL57_RS17610
old locus tag: LDL57_17610
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001067793.1
note: frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: transposase
SIO_010081: LDL57_RS17610
subclass of: SO_0000673
so part of: LDL57_RS17610
location: complement(15922..>16201)
location: region:15922-16201:-1
so has part: feature:15922-16201:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:15922-16201:-1:exon

LDL57_RS17615
type: Gene
subclass of: SO_0000704
RO_0002162: 2879119
locus tag: LDL57_RS17615
old locus tag: LDL57_17615
so part of: sequence
location: 16784..18553
location: region:16784-18553:1
so has part: feature:16784-18553:1:exon
subclass of: SO_0000010

position:16784:1
position: 16784
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18553:1
position: 18553
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16784-18553:1:exon

LDL57_RS17615
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2879119
locus tag: LDL57_RS17615
old locus tag: LDL57_17615
inference: COORDINATES: protein motif:HMM:NF012311.2
GO function: GO:0008236 - serine-type peptidase activity [Evidence IEA]
GO process: GO:0006508 - proteolysis [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: S8 family serine peptidase
translation: MEKYNIILKVNNEVISSLKDRILTFKKNYIKDDFLKSFTFISIINEEMLNSTNKSNSVNFENIIGICQIKDAEKLSLSEMENIIEKLSTYDFVEYAYIKKNSPMDLPVQLETDVIEQLVANNIPDFNPMQGFKDGITPNFIGIDIKYAWSLGITGQNIQIADIEHGFDYEHVNLKRKEFVELTTRKDHHGTAVAGIMFGNDIGSGIKGMVHGADKFYALSELDLGRAHGITIGLKLLKPGDVFVYEMQTRGFDNKYVPADFDYYVWEITQEALKAGIIVIAAAGNGNANLDSDVYFEYRNRDDNGIIRVGAGNELLYKTNFSTFGSMVHLQGWGAWNIVTTGYGDLYDDLSNNKYTRSFSGTSSATPIVASAAVAVQSWYKKQTGDVLTPHEMRALLIKTGTPQNYFSNKKNGHIGPIPNVRNAINELKNILRLSEGSLINIVIDGSNNYKRGEEIVLSAEQSTSKVGNIVSYFWKLPDGLASDSQNQSILNLKIPSGIKINNFSIFLTVKDSLGNSASINHTIIIDYDDNNDKLAEYPIWERNRTYLKYNKVNWKNKIWEAAWWSFNDEPGLVYDGKNTGPNPWKEIK
SIO_010081: LDL57_RS17615
subclass of: SO_0000673
so part of: LDL57_RS17615
location: 16784..18553
location: region:16784-18553:1
so has part: feature:16784-18553:1:exon

WP_225508029.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16784-18553:1:exon

LDL57_RS17915
type: Gene
subclass of: SO_0000704
RO_0002162: 2879119
locus tag: LDL57_RS17915
so part of: sequence
location: complement(18930..19055)
location: region:18930-19055:-1
so has part: feature:18930-19055:-1:exon
subclass of: SO_0000010

position:18930:-1
position: 18930
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19055:-1
position: 19055
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18930-19055:-1:exon

LDL57_RS17915
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2879119
locus tag: LDL57_RS17915
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSSVLSDKHLNLLIKAIHQNTSPKKANNDKSNANLPAIIFA
SIO_010081: LDL57_RS17915
subclass of: SO_0000673
so part of: LDL57_RS17915
location: complement(18930..19055)
location: region:18930-19055:-1
so has part: feature:18930-19055:-1:exon

WP_255653939.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18930-19055:-1:exon

LDL57_RS17620
type: Gene
subclass of: SO_0000704
RO_0002162: 2879119
locus tag: LDL57_RS17620
old locus tag: LDL57_17620
pseudo: true
so part of: sequence
location: complement(19100..20324)
location: region:19100-20324:-1
so has part: feature:19100-20324:-1:exon
subclass of: SO_0000010

position:19100:-1
position: 19100
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20324:-1
position: 20324
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19100-20324:-1:exon

LDL57_RS17620
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2879119
locus tag: LDL57_RS17620
old locus tag: LDL57_17620
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020308204.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: transposase
SIO_010081: LDL57_RS17620
subclass of: SO_0000673
so part of: LDL57_RS17620
location: complement(19100..20324)
location: region:19100-20324:-1
so has part: feature:19100-20324:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:19100-20324:-1:exon

LDL57_RS17625
type: Gene
subclass of: SO_0000704
RO_0002162: 2879119
gene: tnpA
locus tag: LDL57_RS17625
old locus tag: LDL57_17625
so part of: sequence
location: 20383..20787
location: region:20383-20787:1
so has part: feature:20383-20787:1:exon
subclass of: SO_0000010

position:20383:1
position: 20383
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20787:1
position: 20787
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20383-20787:1:exon

LDL57_RS17625
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2879119
gene: tnpA
locus tag: LDL57_RS17625
old locus tag: LDL57_17625
inference: COORDINATES: similar to AA sequence:RefSeq:WP_021141233.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS200/IS605 family transposase
translation: MQKYKINRSRHAAFLLHVHLVFVTKYRKKVLSGLHYKAFHQYAGEVCRDFGADLKESNGESDHVHMLIEYPPTVQLSVLVNSLKAVTSRRLRNEFLDLRGAYGKPVLWSRSYFAGSCGGAPLEVVKQYIQNQRG
SIO_010081: LDL57_RS17625
subclass of: SO_0000673
so part of: LDL57_RS17625
location: 20383..20787
location: region:20383-20787:1
so has part: feature:20383-20787:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:20383-20787:1:exon

LDL57_RS17630
type: Gene
subclass of: SO_0000704
RO_0002162: 2879119
locus tag: LDL57_RS17630
old locus tag: LDL57_17630
so part of: sequence
location: 21326..22132
location: region:21326-22132:1
so has part: feature:21326-22132:1:exon
subclass of: SO_0000010

position:21326:1
position: 21326
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22132:1
position: 22132
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21326-22132:1:exon

LDL57_RS17630
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2879119
locus tag: LDL57_RS17630
old locus tag: LDL57_17630
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRIAKLYICLFTIFLSSCDYSRSYEKYNYVRINAMPVIIDEIYAIQSFFDGEGNDIKKNQLCNLVFNEMNNQDKKNQLNLSVYNVNKEKANQNFIHIARNGNDVQKISTACAAYISSIIYTIPDINLFILNKRRKASEMVKLDEKAIINLIPLRLAISRVNAEIFSSIAQQLANEKNATMDNYRAKIRLLFEQQSLNYLERLKNYYNQESMNKFQLLIFKKGRLIFNNNKGYLFDASNGSVDLLWYGTPWFSQGKLMGNQYNIYLRDN
SIO_010081: LDL57_RS17630
subclass of: SO_0000673
so part of: LDL57_RS17630
location: 21326..22132
location: region:21326-22132:1
so has part: feature:21326-22132:1:exon

WP_180560405.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21326-22132:1:exon

LDL57_RS17635
type: Gene
subclass of: SO_0000704
RO_0002162: 2879119
locus tag: LDL57_RS17635
old locus tag: LDL57_17635
so part of: sequence
location: 22504..25050
location: region:22504-25050:1
so has part: feature:22504-25050:1:exon
subclass of: SO_0000010

position:22504:1
position: 22504
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25050:1
position: 25050
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22504-25050:1:exon

LDL57_RS17635
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2879119
locus tag: LDL57_RS17635
old locus tag: LDL57_17635
inference: COORDINATES: protein motif:HMM:NF015831.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: YadA-like family protein
translation: MNIYQRLIIKLIYLTFVFISFPSLASYSVAGGNSSGANSIAIAVNNGNGTIASGNGAIAIGFDATANDNNSISLGVNANSGLNSIAIGVLANASETNSIAIGNSASSTLANSIALGNNSSATAVSDTSANTAANAIIAGNTLTINQAPSFGVMAVGNRQIQGVADGALTSTSTDAVNGSQLYTISTALNANTISLGSATASAFGGGSAYDNSTGSWTAPSYTVQGNSYNNVGDAIGGIDNNLSNLNANIGSGTTGVVQRTSATNSLVLTALNGTAAAPGNAQKLSNVAAGDLNTNSTDAVNGSQLFTTNNNVTNLNTGLTALTNTVNNIKTGGAGIKYFHTNSTQGDSNAAGTDSIAIGVLANASETNSIAIGNSASSTLANSIALGNNSSATAVSDTSANTAANAIIAGNTLTINQAPSFGVMAVGNRQIQGVADGALTSTSTDAVNGSQLYTISTALNANTISLGSATASAFGGGSAYDNSTGSWTAPSYTVQGNSYNNVGDAIGGIDNNLSNLNANIGSGTTGVVQRTSATNSLVLTALNGTAAAPGNAQKLSNVAAGDLNTNSTDAVNGGQLKTVVDQVDKNRIDIADLTTVVNSTSGSSLIKQDSTTNLITIGSDKMGKAILVSGIEGNRIISGVMAGVNTDDVATVGQLQNIVGNISNRDDTGLGVAIATGRDSLAVGSGSKASGINTVAIGNGSSATAANSVALGHGAIASRDNSVSVGSVGNERQITNVAAGKSRTDAVNVGQVNDAFQNLGKSIEKKVNHINKKLTSGVASAMAMSGIPQAYLPDSNLVGLSASTYNGQSAIAIGVSKTSENGKWMLKINGSGNTQSDFGAVVGVGYQW
SIO_010081: LDL57_RS17635
subclass of: SO_0000673
so part of: LDL57_RS17635
location: 22504..25050
location: region:22504-25050:1
so has part: feature:22504-25050:1:exon

WP_225508031.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22504-25050:1:exon

LDL57_RS17640
type: Gene
subclass of: SO_0000704
RO_0002162: 2879119
locus tag: LDL57_RS17640
old locus tag: LDL57_17640
so part of: sequence
location: 25198..25980
location: region:25198-25980:1
so has part: feature:25198-25980:1:exon
subclass of: SO_0000010

position:25198:1
position: 25198
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25980:1
position: 25980
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25198-25980:1:exon

LDL57_RS17640
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2879119
locus tag: LDL57_RS17640
old locus tag: LDL57_17640
inference: COORDINATES: protein motif:HMM:NF012925.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: glycoside hydrolase family 16 protein
translation: MLCQMIDPLTPQDALPEGFSNYTAIPKLIFSDEFSTTQLDPTKWTARDQNRGKGNNGVEWWYKPENVLKAKGNDALAIDICKVGDNVYSGGRIDSQGKFDFTFGYFECKIHIPITDGHLAAVWLQSSAGLPKGDHVNARTGAEIDVIESNSTSDQYSITLHWGGYGQYHKQSTETVNAPNMRSTWYHTFGVSWESDKMIFTYDGNVVRTVTDSKLISQVREFPILSNEIIPFAQGNIHDAPLDANCTMYIDYVRIWEYIA
SIO_010081: LDL57_RS17640
subclass of: SO_0000673
so part of: LDL57_RS17640
location: 25198..25980
location: region:25198-25980:1
so has part: feature:25198-25980:1:exon

WP_225508058.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25198-25980:1:exon

LDL57_RS17645
type: Gene
subclass of: SO_0000704
RO_0002162: 2879119
locus tag: LDL57_RS17645
old locus tag: LDL57_17645
pseudo: true
so part of: sequence
location: complement(26105..>26215)
location: region:26105-26215:-1
so has part: feature:26105-26215:-1:exon
subclass of: SO_0000010

position:26105:-1
position: 26105
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:26215:-1
position: 26215
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26105-26215:-1:exon

LDL57_RS17645
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2879119
locus tag: LDL57_RS17645
old locus tag: LDL57_17645
inference: COORDINATES: similar to AA sequence:RefSeq:YP_005221000.1
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS6 family transposase
SIO_010081: LDL57_RS17645
subclass of: SO_0000673
so part of: LDL57_RS17645
location: complement(26105..>26215)
location: region:26105-26215:-1
so has part: feature:26105-26215:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:26105-26215:-1:exon

LDL57_RS17650
type: Gene
subclass of: SO_0000704
RO_0002162: 2879119
locus tag: LDL57_RS17650
old locus tag: LDL57_17650
pseudo: true
so part of: sequence
location: complement(26248..>26535)
location: region:26248-26535:-1
so has part: feature:26248-26535:-1:exon
subclass of: SO_0000010

position:26248:-1
position: 26248
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:26535:-1
position: 26535
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26248-26535:-1:exon

LDL57_RS17650
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2879119
locus tag: LDL57_RS17650
old locus tag: LDL57_17650
inference: COORDINATES: protein motif:HMM:NF012464.2
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: recombinase family protein
SIO_010081: LDL57_RS17650
subclass of: SO_0000673
so part of: LDL57_RS17650
location: complement(26248..>26535)
location: region:26248-26535:-1
so has part: feature:26248-26535:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:26248-26535:-1:exon

LDL57_RS17655
type: Gene
subclass of: SO_0000704
RO_0002162: 2879119
locus tag: LDL57_RS17655
old locus tag: LDL57_17655
pseudo: true
so part of: sequence
location: complement(26586..29563)
location: region:26586-29563:-1
so has part: feature:26586-29563:-1:exon
subclass of: SO_0000010

position:26586:-1
position: 26586
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:29563:-1
position: 29563
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26586-29563:-1:exon

LDL57_RS17655
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2879119
locus tag: LDL57_RS17655
old locus tag: LDL57_17655
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001556584.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: Tn3 family transposase
SIO_010081: LDL57_RS17655
subclass of: SO_0000673
so part of: LDL57_RS17655
location: complement(26586..29563)
location: region:26586-29563:-1
so has part: feature:26586-29563:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:26586-29563:-1:exon

LDL57_RS17660
type: Gene
subclass of: SO_0000704
RO_0002162: 2879119
locus tag: LDL57_RS17660
old locus tag: LDL57_17660
pseudo: true
so part of: sequence
location: complement(29620..30244)
location: region:29620-30244:-1
so has part: feature:29620-30244:-1:exon
subclass of: SO_0000010

position:29620:-1
position: 29620
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:30244:-1
position: 30244
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:29620-30244:-1:exon

LDL57_RS17660
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2879119
locus tag: LDL57_RS17660
old locus tag: LDL57_17660
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016809496.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: recombinase family protein
SIO_010081: LDL57_RS17660
subclass of: SO_0000673
so part of: LDL57_RS17660
location: complement(29620..30244)
location: region:29620-30244:-1
so has part: feature:29620-30244:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:29620-30244:-1:exon