Natrinema salinisoli strain SLN56 plasmid unnamed2, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Natrialbales; Natrialbaceae; Natrinema.
Natrinema sp. nov., isolated from a saline soil in Xinjiang(Cui,H.-L.)
Submitted (30-SEP-2021) School of Food and Biological Engineering, Jiangsu University, No 301 Xuefu Road, Jingkou District, Zhenjiang, Zhenjiang, Jiangsu 212013, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP084471.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 4\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 1246.0x\nSequencing Technology :: PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 06/02/2023 00:33:25\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,681\nCDSs (total) :: 4,618\nGenes (coding) :: 4,542\nCDSs (with protein) :: 4,542\nGenes (RNA) :: 63\nrRNAs :: 4, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 3, 3 (5S, 16S, 23S)\ntRNAs :: 51\nncRNAs :: 2\nPseudo Genes (total) :: 76\nCDSs (without protein) :: 76\nPseudo Genes (ambiguous residues) :: 0 of 76\nPseudo Genes (frameshifted) :: 30 of 76\nPseudo Genes (incomplete) :: 54 of 76\nPseudo Genes (internal stop) :: 16 of 76\nPseudo Genes (multiple problems) :: 21 of 76\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Natrinema salinisoli Bao et al. 2022
COORDINATES: similar to AA sequence:RefSeq:WP_008015511.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006185508.1
COORDINATES: similar to AA sequence:RefSeq:WP_014051116.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006067313.1
COORDINATES: similar to AA sequence:RefSeq:WP_007260917.1
COORDINATES: protein motif:HMM:NF013757.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: protein motif:HMM:NF012711.2
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF012686.2
COORDINATES: protein motif:HMM:NF013646.2
COORDINATES: similar to AA sequence:RefSeq:WP_006107339.1
COORDINATES: similar to AA sequence:RefSeq:WP_006823983.1
COORDINATES: similar to AA sequence:RefSeq:WP_006823984.1
GO:0003824 - catalytic activity [Evidence IEA]
fumarylacetoacetate hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007276359.1
COORDINATES: similar to AA sequence:RefSeq:WP_008892408.1
COORDINATES: similar to AA sequence:RefSeq:WP_008422455.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004056152.1
COORDINATES: protein motif:HMM:NF024698.2
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006824018.1
GO:0016790 - thiolester hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006823976.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]
FAD-binding and (Fe-S)-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004216330.1
COORDINATES: similar to AA sequence:RefSeq:WP_006169560.1
GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]
GO:0006631 - fatty acid metabolic process [Evidence IEA]
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
3-hydroxyacyl-CoA dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006110281.1
GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: protein motif:HMM:NF012517.2
LLM class flavin-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_006667284.1
COORDINATES: protein motif:HMM:NF014084.2
COORDINATES: similar to AA sequence:RefSeq:WP_006882648.1
GO:0008686 - 3,4-dihydroxy-2-butanone-4-phosphate synthase activity [Evidence IEA]
3,4-dihydroxy-2-butanone-4-phosphate synthase
COORDINATES: similar to AA sequence:RefSeq:WP_008318032.1
COORDINATES: protein motif:HMM:NF013161.2
COORDINATES: similar to AA sequence:RefSeq:WP_004594406.1
COORDINATES: similar to AA sequence:RefSeq:WP_008426372.1
COORDINATES: similar to AA sequence:RefSeq:WP_006667271.1
COORDINATES: similar to AA sequence:RefSeq:WP_006667266.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013879911.1
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
glycoside hydrolase family 3 C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009487881.1
PPOX class F420-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_004216596.1
COORDINATES: protein motif:HMM:NF014564.2
COORDINATES: similar to AA sequence:RefSeq:WP_004061732.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012945849.1
COORDINATES: similar to AA sequence:RefSeq:WP_008419837.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945410.1
COORDINATES: similar to AA sequence:RefSeq:WP_015322700.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_015320081.1
COORDINATES: similar to AA sequence:RefSeq:WP_006181770.1
GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0016651 - oxidoreductase activity, acting on NAD(P)H [Evidence IEA]
COORDINATES: protein motif:HMM:NF016831.2
COORDINATES: similar to AA sequence:RefSeq:WP_008364407.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053094.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053095.1
COORDINATES: similar to AA sequence:RefSeq:WP_020222170.1
COORDINATES: similar to AA sequence:RefSeq:WP_009488207.1
COORDINATES: similar to AA sequence:RefSeq:WP_008444896.1
COORDINATES: similar to AA sequence:RefSeq:WP_010904033.1
COORDINATES: similar to AA sequence:RefSeq:WP_013881806.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006093032.1
COORDINATES: similar to AA sequence:RefSeq:WP_004968227.1
COORDINATES: similar to AA sequence:RefSeq:WP_013035035.1
COORDINATES: similar to AA sequence:RefSeq:WP_006091191.1
COORDINATES: similar to AA sequence:RefSeq:WP_012943462.1
COORDINATES: similar to AA sequence:RefSeq:WP_008015343.1
COORDINATES: similar to AA sequence:RefSeq:WP_006667377.1
COORDINATES: similar to AA sequence:RefSeq:WP_006182410.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053183.1
COORDINATES: similar to AA sequence:RefSeq:WP_004044685.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006182371.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006650640.1
GO:0004471 - malate dehydrogenase (decarboxylating) (NAD+) activity [Evidence IEA]; GO:0004470 - malic enzyme activity [Evidence IEA]; GO:0051287 - NAD binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006183460.1
COORDINATES: similar to AA sequence:RefSeq:WP_004042160.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006183369.1
transcription initiation factor IIB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014865851.1
COORDINATES: similar to AA sequence:RefSeq:WP_006090813.1
COORDINATES: similar to AA sequence:RefSeq:WP_006111143.1
COORDINATES: similar to AA sequence:RefSeq:WP_006648274.1
ArdC-like ssDNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006111141.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060460.1
COORDINATES: similar to AA sequence:RefSeq:WP_004048595.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004043407.1
COORDINATES: similar to AA sequence:RefSeq:WP_005579956.1
COORDINATES: similar to AA sequence:RefSeq:WP_008319133.1
COORDINATES: similar to AA sequence:RefSeq:WP_008580586.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007738597.1
COORDINATES: similar to AA sequence:RefSeq:WP_004213896.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183424.1
COORDINATES: similar to AA sequence:RefSeq:WP_006054726.1
COORDINATES: similar to AA sequence:RefSeq:WP_006825217.1
COORDINATES: similar to AA sequence:RefSeq:WP_008446344.1
COORDINATES: similar to AA sequence:RefSeq:WP_010904194.1
GO:0003688 - DNA replication origin binding [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
orc1/cdc6 family replication initiation protein
COORDINATES: similar to AA sequence:RefSeq:WP_010904193.1
COORDINATES: similar to AA sequence:RefSeq:WP_008458786.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013621.2
COORDINATES: similar to AA sequence:RefSeq:WP_008605661.1
COORDINATES: similar to AA sequence:RefSeq:WP_009375055.1
COORDINATES: similar to AA sequence:RefSeq:WP_008444956.1
COORDINATES: similar to AA sequence:RefSeq:WP_008458770.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183341.1
COORDINATES: similar to AA sequence:RefSeq:WP_013881869.1
COORDINATES: similar to AA sequence:RefSeq:WP_006182299.1
COORDINATES: similar to AA sequence:RefSeq:WP_004216116.1