Halomicrobium salinisoli strain LT50 plasmid unnamed2, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Halobacteriales; Haloarculaceae; Halomicrobium.
Halophilic archaea isolated from solar salterns and salt lakes
Submitted (30-SEP-2021) School of Food and Biological Engineering, Jiangsu University, No 301 Xuefu Road, Jingkou District, Zhenjiang, Zhenjiang, Jiangsu 212013, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP084465.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 4\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 116.6x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/23/2023 04:38:18\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,814\nCDSs (total) :: 3,749\nGenes (coding) :: 3,730\nCDSs (with protein) :: 3,730\nGenes (RNA) :: 65\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 51\nncRNAs :: 2\nPseudo Genes (total) :: 19\nCDSs (without protein) :: 19\nPseudo Genes (ambiguous residues) :: 0 of 19\nPseudo Genes (frameshifted) :: 2 of 19\nPseudo Genes (incomplete) :: 18 of 19\nPseudo Genes (internal stop) :: 2 of 19\nPseudo Genes (multiple problems) :: 2 of 19\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
China: gobi saline soil of Tarim Basin, Xinjiang
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_008311452.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013691.2
COORDINATES: similar to AA sequence:RefSeq:WP_005040990.1
GO:0043571 - maintenance of CRISPR repeat elements [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004514837.1
COORDINATES: similar to AA sequence:RefSeq:WP_005040995.1
COORDINATES: similar to AA sequence:RefSeq:WP_009762170.1
COORDINATES: similar to AA sequence:RefSeq:WP_005041008.1
COORDINATES: similar to AA sequence:RefSeq:WP_006651689.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006651690.1
COORDINATES: similar to AA sequence:RefSeq:WP_005041013.1
COORDINATES: similar to AA sequence:RefSeq:WP_004595551.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF015210.2
COORDINATES: similar to AA sequence:RefSeq:WP_008580612.1
COORDINATES: similar to AA sequence:RefSeq:WP_006825217.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008446344.1
COORDINATES: similar to AA sequence:RefSeq:WP_004516282.1
orc1/cdc6 family replication initiation protein
COORDINATES: protein motif:HMM:NF021897.2
type IV secretion system DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011222440.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019992085.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183340.1
ArdC-like ssDNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008308599.1
COORDINATES: protein motif:HMM:NF012789.2
COORDINATES: similar to AA sequence:RefSeq:WP_004043413.1
transcription initiation factor IIB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014053197.1
COORDINATES: similar to AA sequence:RefSeq:WP_005532732.1
type II toxin-antitoxin system HicB family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_007737224.1
type II toxin-antitoxin system HicA family toxin
COORDINATES: protein motif:HMM:NF024258.2
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004966137.1
DUF2791 family P-loop domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004966135.1
COORDINATES: protein motif:HMM:NF013835.2
COORDINATES: protein motif:HMM:NF013777.2
winged helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_013875885.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
GO:0009307 - DNA restriction-modification system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004595547.1
queuine tRNA-ribosyltransferase tRNA-guanine transglycosylase
COORDINATES: similar to AA sequence:RefSeq:WP_008526935.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]