Haloprofundus halobius strain SEDH52 plasmid unnamed4, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Haloferacales; Haloferacaceae; Haloprofundus.
Haloprofundus sp. nov., isolated from a salt lake in Tibet
Submitted (15-SEP-2021) School of Food and Biological Engineering, Jiangsu University, No 301 Xuefu Road, Jingkou District, Zhenjiang, Zhenjiang, Jiangsu 212013, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP083670.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 4\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 749.0x\nSequencing Technology :: PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/16/2022 12:03:39\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 4,068\nCDSs (total) :: 4,009\nGenes (coding) :: 3,914\nCDSs (with protein) :: 3,914\nGenes (RNA) :: 59\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 51\nncRNAs :: 2\nPseudo Genes (total) :: 95\nCDSs (without protein) :: 95\nPseudo Genes (ambiguous residues) :: 0 of 95\nPseudo Genes (frameshifted) :: 40 of 95\nPseudo Genes (incomplete) :: 69 of 95\nPseudo Genes (internal stop) :: 14 of 95\nPseudo Genes (multiple problems) :: 24 of 95\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: protein motif:HMM:NF013793.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_008528372.1
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008425416.1
GO:0008966 - phosphoglucosamine mutase activity [Evidence IEA]
GO:0009103 - lipopolysaccharide biosynthetic process [Evidence IEA]; GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007261491.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014863628.1
GO:0004360 - glutamine-fructose-6-phosphate transaminase (isomerizing) activity [Evidence IEA]
GO:0006040 - amino sugar metabolic process [Evidence IEA]; GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
glutamine--fructose-6-phosphate transaminase (isomerizing)
COORDINATES: similar to AA sequence:RefSeq:WP_007701267.1
COORDINATES: similar to AA sequence:RefSeq:WP_007140937.1
GO:0008484 - sulfuric ester hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006673517.1
COORDINATES: similar to AA sequence:RefSeq:WP_008418624.1
COORDINATES: protein motif:HMM:NF012936.2
GO:0004066 - asparagine synthase (glutamine-hydrolyzing) activity [Evidence IEA]
GO:0006529 - asparagine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013880556.1
COORDINATES: similar to AA sequence:RefSeq:WP_006884812.1
COORDINATES: similar to AA sequence:RefSeq:WP_008418622.1
COORDINATES: similar to AA sequence:RefSeq:WP_007142970.1
COORDINATES: similar to AA sequence:RefSeq:WP_007977516.1
COORDINATES: similar to AA sequence:RefSeq:WP_006077260.1
polysaccharide deacetylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004060892.1
GO:0051287 - NAD binding [Evidence IEA]; GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO:0003979 - UDP-glucose 6-dehydrogenase activity [Evidence IEA]
GO:0000271 - polysaccharide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008418603.1
COORDINATES: similar to AA sequence:RefSeq:WP_007977532.1
DegT/DnrJ/EryC1/StrS family aminotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_006113713.1
COORDINATES: protein motif:HMM:NF014686.2
COORDINATES: protein motif:HMM:NF016214.2
COORDINATES: protein motif:HMM:NF019380.2
COORDINATES: similar to AA sequence:RefSeq:WP_008895651.1
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF024248.2
COORDINATES: similar to AA sequence:RefSeq:WP_015300850.1
COORDINATES: similar to AA sequence:RefSeq:WP_006113719.1
COORDINATES: protein motif:HMM:NF040138.1
COORDINATES: similar to AA sequence:RefSeq:WP_006168847.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007983321.1
COORDINATES: similar to AA sequence:RefSeq:WP_012946043.1
COORDINATES: similar to AA sequence:RefSeq:WP_009378027.1
orc1/cdc6 family replication initiation protein