Haloprofundus halobius strain SEDH52 plasmid unnamed3, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Haloferacales; Haloferacaceae; Haloprofundus.
Haloprofundus sp. nov., isolated from a salt lake in Tibet
Submitted (15-SEP-2021) School of Food and Biological Engineering, Jiangsu University, No 301 Xuefu Road, Jingkou District, Zhenjiang, Zhenjiang, Jiangsu 212013, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP083669.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 4\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 749.0x\nSequencing Technology :: PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/16/2022 12:03:39\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 4,068\nCDSs (total) :: 4,009\nGenes (coding) :: 3,914\nCDSs (with protein) :: 3,914\nGenes (RNA) :: 59\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 51\nncRNAs :: 2\nPseudo Genes (total) :: 95\nCDSs (without protein) :: 95\nPseudo Genes (ambiguous residues) :: 0 of 95\nPseudo Genes (frameshifted) :: 40 of 95\nPseudo Genes (incomplete) :: 69 of 95\nPseudo Genes (internal stop) :: 14 of 95\nPseudo Genes (multiple problems) :: 24 of 95\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_008387649.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008458671.1
COORDINATES: similar to AA sequence:RefSeq:WP_011324459.1
BlaI/MecI/CopY family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_006667194.1
COORDINATES: similar to AA sequence:RefSeq:WP_006667195.1
phage integrase SAM-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006431778.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_006184771.1
COORDINATES: similar to AA sequence:RefSeq:WP_008387891.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053094.1
COORDINATES: similar to AA sequence:RefSeq:WP_008364410.1
COORDINATES: similar to AA sequence:RefSeq:WP_009762226.1
COORDINATES: similar to AA sequence:RefSeq:WP_009488207.1
COORDINATES: similar to AA sequence:RefSeq:WP_008444896.1
COORDINATES: similar to AA sequence:RefSeq:WP_009762229.1
COORDINATES: similar to AA sequence:RefSeq:WP_014865840.1
COORDINATES: similar to AA sequence:RefSeq:WP_008580523.1
COORDINATES: similar to AA sequence:RefSeq:WP_008388057.1
COORDINATES: similar to AA sequence:RefSeq:WP_015298827.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006179655.1
COORDINATES: similar to AA sequence:RefSeq:WP_006433288.1
Lrp/AsnC family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_004215896.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945646.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945647.1
COORDINATES: similar to AA sequence:RefSeq:WP_008421728.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060562.1
COORDINATES: similar to AA sequence:RefSeq:WP_007276498.1
sugar-specific transcriptional regulator TrmB
COORDINATES: similar to AA sequence:RefSeq:WP_006828030.1
GO:0016301 - kinase activity [Evidence IEA]
type II toxin-antitoxin system death-on-curing family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_004060441.1
COORDINATES: similar to AA sequence:RefSeq:WP_013881810.1
COORDINATES: similar to AA sequence:RefSeq:WP_008580532.1
COORDINATES: similar to AA sequence:RefSeq:WP_014557022.1
COORDINATES: similar to AA sequence:RefSeq:WP_008422548.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053108.1
COORDINATES: similar to AA sequence:RefSeq:WP_008094346.1
ribbon-helix-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014053110.1
COORDINATES: similar to AA sequence:RefSeq:WP_004216230.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053112.1
COORDINATES: similar to AA sequence:RefSeq:WP_004061517.1
COORDINATES: similar to AA sequence:RefSeq:WP_009762243.1
COORDINATES: protein motif:HMM:NF025119.2
COORDINATES: similar to AA sequence:RefSeq:WP_006184794.1
transcription initiation factor IIB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013035150.1
COORDINATES: similar to AA sequence:RefSeq:WP_013035044.1
COORDINATES: protein motif:HMM:NF025388.2
COORDINATES: similar to AA sequence:RefSeq:WP_006183447.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594499.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183361.1
COORDINATES: similar to AA sequence:RefSeq:WP_004048585.1
COORDINATES: similar to AA sequence:RefSeq:WP_009762203.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011222456.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011222457.1
COORDINATES: similar to AA sequence:RefSeq:WP_015911446.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
GO:0009307 - DNA restriction-modification system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008444956.1
COORDINATES: similar to AA sequence:RefSeq:WP_008524600.1
COORDINATES: similar to AA sequence:RefSeq:WP_008524598.1
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015911450.1
COORDINATES: similar to AA sequence:RefSeq:WP_006111740.1
COORDINATES: similar to AA sequence:RefSeq:WP_006092913.1
COORDINATES: similar to AA sequence:RefSeq:WP_004517739.1
COORDINATES: similar to AA sequence:RefSeq:WP_004043375.1
ArdC-like ssDNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013035052.1
COORDINATES: similar to AA sequence:RefSeq:WP_008446344.1
COORDINATES: similar to AA sequence:RefSeq:WP_006825219.1
orc1/cdc6 family replication initiation protein
COORDINATES: similar to AA sequence:RefSeq:WP_006825220.1
COORDINATES: similar to AA sequence:RefSeq:WP_004514844.1
COORDINATES: similar to AA sequence:RefSeq:WP_013035178.1
COORDINATES: similar to AA sequence:RefSeq:WP_014865877.1
COORDINATES: similar to AA sequence:RefSeq:WP_004043364.1
COORDINATES: similar to AA sequence:RefSeq:WP_008458786.1
COORDINATES: similar to AA sequence:RefSeq:WP_009762222.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007995789.1
COORDINATES: similar to AA sequence:RefSeq:WP_012660267.1
COORDINATES: similar to AA sequence:RefSeq:WP_007538674.1
COORDINATES: similar to AA sequence:RefSeq:WP_009762218.1
COORDINATES: similar to AA sequence:RefSeq:WP_007258721.1
COORDINATES: similar to AA sequence:RefSeq:WP_007258720.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183336.1
phospholipase D-like domain-containing protein
COORDINATES: protein motif:HMM:NF013094.2
COORDINATES: similar to AA sequence:RefSeq:WP_006090824.1
COORDINATES: similar to AA sequence:RefSeq:WP_007258717.1
ribonuclease H-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006886087.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]