Haloprofundus halobius strain SEDH52 plasmid unnamed2, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Haloferacales; Haloferacaceae; Haloprofundus.
Haloprofundus sp. nov., isolated from a salt lake in Tibet
Submitted (15-SEP-2021) School of Food and Biological Engineering, Jiangsu University, No 301 Xuefu Road, Jingkou District, Zhenjiang, Zhenjiang, Jiangsu 212013, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP083668.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 4\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 749.0x\nSequencing Technology :: PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/16/2022 12:03:39\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 4,068\nCDSs (total) :: 4,009\nGenes (coding) :: 3,914\nCDSs (with protein) :: 3,914\nGenes (RNA) :: 59\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 51\nncRNAs :: 2\nPseudo Genes (total) :: 95\nCDSs (without protein) :: 95\nPseudo Genes (ambiguous residues) :: 0 of 95\nPseudo Genes (frameshifted) :: 40 of 95\nPseudo Genes (incomplete) :: 69 of 95\nPseudo Genes (internal stop) :: 14 of 95\nPseudo Genes (multiple problems) :: 24 of 95\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_007542231.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009377613.1
COORDINATES: similar to AA sequence:RefSeq:WP_013035102.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014864301.1
COORDINATES: similar to AA sequence:RefSeq:WP_007143121.1
COORDINATES: similar to AA sequence:RefSeq:WP_004968197.1
GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008422071.1
COORDINATES: protein motif:HMM:NF024117.2
COORDINATES: similar to AA sequence:RefSeq:WP_006090800.1
COORDINATES: similar to AA sequence:RefSeq:WP_009486643.1
COORDINATES: similar to AA sequence:RefSeq:WP_009486642.1
COORDINATES: similar to AA sequence:RefSeq:WP_012659171.1
COORDINATES: similar to AA sequence:RefSeq:WP_015762808.1
COORDINATES: protein motif:HMM:NF019151.2
COORDINATES: protein motif:HMM:NF015210.2
COORDINATES: protein motif:HMM:NF013776.2
COORDINATES: similar to AA sequence:RefSeq:WP_012996351.1
COORDINATES: similar to AA sequence:RefSeq:WP_005533583.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_008322218.1
COORDINATES: protein motif:HMM:NF021622.2
COORDINATES: similar to AA sequence:RefSeq:WP_004213885.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005577871.1
COORDINATES: similar to AA sequence:RefSeq:WP_008094512.1
COORDINATES: similar to AA sequence:RefSeq:WP_009367731.1
COORDINATES: similar to AA sequence:RefSeq:WP_009367836.1
COORDINATES: similar to AA sequence:RefSeq:WP_008094506.1
COORDINATES: similar to AA sequence:RefSeq:WP_008094504.1
COORDINATES: similar to AA sequence:RefSeq:WP_008094503.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183468.1
COORDINATES: similar to AA sequence:RefSeq:WP_008164888.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004062227.1
COORDINATES: protein motif:HMM:NF024118.2
COORDINATES: similar to AA sequence:RefSeq:WP_015298978.1
COORDINATES: similar to AA sequence:RefSeq:WP_008421659.1
COORDINATES: similar to AA sequence:RefSeq:WP_015762189.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014053422.1
COORDINATES: similar to AA sequence:RefSeq:WP_009367811.1
transcription initiation factor IIB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004043411.1
COORDINATES: similar to AA sequence:RefSeq:WP_009367708.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009367706.1
COORDINATES: similar to AA sequence:RefSeq:WP_014555918.1
COORDINATES: similar to AA sequence:RefSeq:WP_009367704.1
GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004594499.1
COORDINATES: similar to AA sequence:RefSeq:WP_006066875.1
COORDINATES: similar to AA sequence:RefSeq:WP_009762263.1
COORDINATES: similar to AA sequence:RefSeq:WP_008524600.1
COORDINATES: similar to AA sequence:RefSeq:WP_015911449.1
COORDINATES: similar to AA sequence:RefSeq:WP_006065873.1
COORDINATES: similar to AA sequence:RefSeq:WP_009762147.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006076425.1
COORDINATES: similar to AA sequence:RefSeq:WP_009367802.1
COORDINATES: similar to AA sequence:RefSeq:WP_009378216.1
COORDINATES: similar to AA sequence:RefSeq:WP_006184805.1
COORDINATES: similar to AA sequence:RefSeq:WP_009367695.1
COORDINATES: similar to AA sequence:RefSeq:WP_004043375.1
ArdC-like ssDNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008895581.1
COORDINATES: similar to AA sequence:RefSeq:WP_005040221.1
sulfite exporter TauE/SafE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011223404.1
COORDINATES: similar to AA sequence:RefSeq:WP_008006504.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF014636.2
COORDINATES: similar to AA sequence:RefSeq:WP_012807608.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012659175.1
COORDINATES: similar to AA sequence:RefSeq:WP_009486638.1
COORDINATES: similar to AA sequence:RefSeq:WP_005038755.1
COORDINATES: similar to AA sequence:RefSeq:WP_004967250.1
COORDINATES: similar to AA sequence:RefSeq:WP_007260687.1
COORDINATES: similar to AA sequence:RefSeq:WP_006181028.1
COORDINATES: similar to AA sequence:RefSeq:WP_009377240.1
COORDINATES: similar to AA sequence:RefSeq:WP_004217547.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895140.1
COORDINATES: similar to AA sequence:RefSeq:WP_008415288.1
COORDINATES: similar to AA sequence:RefSeq:WP_005042091.1
COORDINATES: similar to AA sequence:RefSeq:WP_006652852.1
GO:0004795 - threonine synthase activity [Evidence IEA]
GO:0009088 - threonine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004216319.1
COORDINATES: similar to AA sequence:RefSeq:WP_006828006.1
COORDINATES: similar to AA sequence:RefSeq:WP_008385938.1
methyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004053348.1
COORDINATES: similar to AA sequence:RefSeq:WP_007741681.1
COORDINATES: similar to AA sequence:RefSeq:WP_008443537.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012942865.1
COORDINATES: similar to AA sequence:RefSeq:WP_006432930.1
COORDINATES: similar to AA sequence:RefSeq:WP_006091579.1
COORDINATES: similar to AA sequence:RefSeq:WP_007695052.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006111181.1
COORDINATES: protein motif:HMM:NF036897.2
COORDINATES: protein motif:HMM:NF016330.2
COORDINATES: protein motif:HMM:NF014325.2
COORDINATES: similar to AA sequence:RefSeq:WP_015300001.1
COORDINATES: similar to AA sequence:RefSeq:WP_008003795.1
COORDINATES: similar to AA sequence:RefSeq:WP_012946109.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594220.1
Lrp/AsnC family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_009488255.1
COORDINATES: similar to AA sequence:RefSeq:WP_006884331.1
COORDINATES: similar to AA sequence:RefSeq:WP_015911446.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004965208.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018257429.1
COORDINATES: similar to AA sequence:RefSeq:WP_007698453.1
GO:0016021 - integral component of membrane [Evidence IEA]
GO:0015299 - solute:proton antiporter activity [Evidence IEA]
GO:0006812 - cation transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012945857.1
COORDINATES: similar to AA sequence:RefSeq:WP_015320567.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF015552.2
tellurite resistance/C4-dicarboxylate transporter family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015298827.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013125.2
COORDINATES: similar to AA sequence:RefSeq:WP_007142650.1
formate/nitrite transporter family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004048585.1
COORDINATES: similar to AA sequence:RefSeq:WP_009762271.1
COORDINATES: similar to AA sequence:RefSeq:WP_008364333.1
COORDINATES: similar to AA sequence:RefSeq:WP_006667373.1
COORDINATES: similar to AA sequence:RefSeq:WP_006630676.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053212.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008524572.1
COORDINATES: similar to AA sequence:RefSeq:WP_014557042.1
COORDINATES: similar to AA sequence:RefSeq:WP_007258704.1
COORDINATES: similar to AA sequence:RefSeq:WP_004515723.1
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF020645.2
COORDINATES: similar to AA sequence:RefSeq:WP_012289783.1
COORDINATES: similar to AA sequence:RefSeq:WP_007543872.1
RNA-guided endonuclease TnpB family protein