Haloprofundus salinisoli strain SQT7-1 plasmid unnamed2, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Haloferacales; Haloferacaceae; Haloprofundus.
Haloprofundus halophilus sp. nov., isolated from the saline soil of Tarim Basin
Submitted (15-SEP-2021) School of Food and Biological Engineering, Jiangsu University, No 301 Xuefu Road, Jingkou District, Zhenjiang, Zhenjiang, Jiangsu 212013, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP083665.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 4\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 1757.0x\nSequencing Technology :: PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/16/2022 11:42:29\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 3,527\nCDSs (total) :: 3,462\nGenes (coding) :: 3,422\nCDSs (with protein) :: 3,422\nGenes (RNA) :: 65\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 57\nncRNAs :: 2\nPseudo Genes (total) :: 40\nCDSs (without protein) :: 40\nPseudo Genes (ambiguous residues) :: 0 of 40\nPseudo Genes (frameshifted) :: 11 of 40\nPseudo Genes (incomplete) :: 35 of 40\nPseudo Genes (internal stop) :: 1 of 40\nPseudo Genes (multiple problems) :: 6 of 40\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: protein motif:HMM:NF013793.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_008528372.1
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005559124.1
GO:0008966 - phosphoglucosamine mutase activity [Evidence IEA]
GO:0009103 - lipopolysaccharide biosynthetic process [Evidence IEA]; GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007261491.1
COORDINATES: similar to AA sequence:RefSeq:WP_014863628.1
GO:0004360 - glutamine-fructose-6-phosphate transaminase (isomerizing) activity [Evidence IEA]
GO:0006040 - amino sugar metabolic process [Evidence IEA]; GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
glutamine--fructose-6-phosphate transaminase (isomerizing)
COORDINATES: similar to AA sequence:RefSeq:WP_006673517.1
COORDINATES: similar to AA sequence:RefSeq:WP_008418624.1
COORDINATES: similar to AA sequence:RefSeq:WP_013880556.1
COORDINATES: similar to AA sequence:RefSeq:WP_006067296.1
COORDINATES: similar to AA sequence:RefSeq:WP_008418622.1
COORDINATES: similar to AA sequence:RefSeq:WP_006650353.1
COORDINATES: similar to AA sequence:RefSeq:WP_007142969.1
COORDINATES: similar to AA sequence:RefSeq:WP_007142970.1
COORDINATES: similar to AA sequence:RefSeq:WP_007977516.1
COORDINATES: similar to AA sequence:RefSeq:WP_006077260.1
polysaccharide deacetylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004060892.1
GO:0051287 - NAD binding [Evidence IEA]; GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO:0003979 - UDP-glucose 6-dehydrogenase activity [Evidence IEA]
GO:0000271 - polysaccharide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008572433.1
COORDINATES: similar to AA sequence:RefSeq:WP_007977532.1
DegT/DnrJ/EryC1/StrS family aminotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_006113713.1
COORDINATES: protein motif:HMM:NF014686.2
COORDINATES: similar to AA sequence:RefSeq:WP_006077270.1
COORDINATES: protein motif:HMM:NF019380.2
COORDINATES: similar to AA sequence:RefSeq:WP_008895651.1
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF024248.2
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015300850.1
COORDINATES: similar to AA sequence:RefSeq:WP_006113719.1
COORDINATES: protein motif:HMM:NF040138.1
COORDINATES: protein motif:HMM:NF020897.2
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005558817.1
COORDINATES: similar to AA sequence:RefSeq:WP_009378027.1
orc1/cdc6 family replication initiation protein