Metabacillus dongyingensis strain BY2G20 plasmid pBY2G20, complete sequence.
Bacteria; Bacillota; Bacilli; Bacillales; Bacillaceae; Metabacillus.
Metabacillus dongyingensis sp. nov. Is Represented by the Plant Growth-Promoting Bacterium BY2G20 Isolated from Saline-Alkaline Soil and Enhances the Growth of Zea mays L. under Salt Stress
Submitted (03-SEP-2021) College of Life Sciences and Shandong Engineering Research Center of Plant-Microbial Restoration for Saline-alkali Land and State Key Laboratory of Crop Biology, Shandong Agricultural University, No.61, Daizong Street Taian, Tai'an, Shandong 271018, China
REFSEQ INFORMATION: The reference sequence is identical to\nOK052578.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Assembly-Data-START##\nAssembly Method :: MaSuRCA v. 2.2.1\nSequencing Technology :: Illumina; PacBio\n##Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/20/2023 11:02:22\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,320\nCDSs (total) :: 5,198\nGenes (coding) :: 5,091\nCDSs (with protein) :: 5,091\nGenes (RNA) :: 122\nrRNAs :: 11, 11, 11 (5S, 16S, 23S)\ncomplete rRNAs :: 11, 11, 11 (5S, 16S, 23S)\ntRNAs :: 84\nncRNAs :: 5\nPseudo Genes (total) :: 107\nCDSs (without protein) :: 107\nPseudo Genes (ambiguous residues) :: 0 of 107\nPseudo Genes (frameshifted) :: 43 of 107\nPseudo Genes (incomplete) :: 77 of 107\nPseudo Genes (internal stop) :: 22 of 107\nPseudo Genes (multiple problems) :: 32 of 107\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Metabacillus dongyingensis
COORDINATES: similar to AA sequence:RefSeq:WP_009708931.1
GO:0030246 - carbohydrate binding [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019382279.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000601800.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF012311.2
GO:0008236 - serine-type peptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018392436.1
COORDINATES: similar to AA sequence:RefSeq:WP_018393111.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_009333850.1
organic hydroperoxide resistance protein
COORDINATES: protein motif:HMM:NF012791.2
COORDINATES: similar to AA sequence:RefSeq:WP_013060139.1
COORDINATES: similar to AA sequence:RefSeq:WP_016766116.1
COORDINATES: similar to AA sequence:RefSeq:WP_009676552.1
COORDINATES: similar to AA sequence:RefSeq:WP_017368415.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013082566.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0008134 - transcription factor binding [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma-54-dependent Fis family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012260853.1
COORDINATES: similar to AA sequence:RefSeq:WP_013523969.1
CoA-acylating methylmalonate-semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_013082570.1
GO:0004399 - histidinol dehydrogenase activity [Evidence IEA]
GO:0000105 - histidine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013057349.1
COORDINATES: similar to AA sequence:RefSeq:WP_010198806.1
COORDINATES: similar to AA sequence:RefSeq:WP_009593042.1
COORDINATES: similar to AA sequence:RefSeq:WP_013921419.1
COORDINATES: protein motif:HMM:NF017760.2
COORDINATES: protein motif:HMM:NF019310.2
COORDINATES: similar to AA sequence:RefSeq:WP_009766645.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF019322.2
COORDINATES: protein motif:HMM:NF012376.2
COORDINATES: protein motif:HMM:NF012956.2
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_016123631.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013919663.1
COORDINATES: protein motif:HMM:NF028245.2
COORDINATES: similar to AA sequence:RefSeq:WP_019381044.1
COORDINATES: protein motif:HMM:NF020291.2
primase C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF014044.2
COORDINATES: similar to AA sequence:RefSeq:WP_003349916.1
COORDINATES: protein motif:HMM:NF024056.2
COORDINATES: similar to AA sequence:RefSeq:WP_016129964.1
GO:0004616 - phosphogluconate dehydrogenase (decarboxylating) activity [Evidence IEA]
GO:0006098 - pentose-phosphate shunt [Evidence IEA]
decarboxylating 6-phosphogluconate dehydrogenase
COORDINATES: protein motif:HMM:NF012301.2
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: protein motif:HMM:NF014567.2
COORDINATES: protein motif:HMM:NF024808.2
sugar ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_004436347.1
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_004436346.1
substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004436345.1
sugar ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_019004568.1
COORDINATES: similar to AA sequence:RefSeq:WP_013084313.1
COORDINATES: similar to AA sequence:RefSeq:WP_020279282.1
COORDINATES: similar to AA sequence:RefSeq:WP_004436343.1
COORDINATES: similar to AA sequence:RefSeq:WP_004436342.1
COORDINATES: similar to AA sequence:RefSeq:WP_019004570.1
COORDINATES: similar to AA sequence:RefSeq:WP_010228591.1
sugar phosphate isomerase/epimerase family protein
COORDINATES: protein motif:HMM:NF028222.2
zinc-dependent alcohol dehydrogenase family protein
COORDINATES: protein motif:HMM:NF013429.2
COORDINATES: similar to AA sequence:RefSeq:WP_004430290.1
COORDINATES: similar to AA sequence:RefSeq:WP_013056479.1
COORDINATES: similar to AA sequence:RefSeq:WP_013308891.1
COORDINATES: similar to AA sequence:RefSeq:WP_011691759.1
COORDINATES: similar to AA sequence:RefSeq:WP_018664170.1
COORDINATES: similar to AA sequence:RefSeq:WP_003178510.1
COORDINATES: similar to AA sequence:RefSeq:WP_003353965.1
GO:0097367 - carbohydrate derivative binding [Evidence IEA]
GO:1901135 - carbohydrate derivative metabolic process [Evidence IEA]
internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019382144.1
COORDINATES: protein motif:HMM:NF015042.2
COORDINATES: similar to AA sequence:RefSeq:WP_012685258.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003726066.1
COORDINATES: similar to AA sequence:RefSeq:WP_018883612.1
COORDINATES: similar to AA sequence:RefSeq:WP_018392886.1
multidrug resistance efflux transporter family protein
COORDINATES: similar to AA sequence:RefSeq:WP_002200542.1
GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:NP_391893.1
COORDINATES: similar to AA sequence:RefSeq:WP_018883509.1
GO:0015573 - beta-glucoside transmembrane transporter activity [Evidence IEA]
GO:0015759 - beta-glucoside transport [Evidence IEA]; GO:0009401 - phosphoenolpyruvate-dependent sugar phosphotransferase system [Evidence IEA]
beta-glucoside-specific PTS transporter subunit IIABC
COORDINATES: similar to AA sequence:RefSeq:NP_391891.1
COORDINATES: similar to AA sequence:RefSeq:WP_009331881.1
COORDINATES: similar to AA sequence:RefSeq:WP_002200895.1
COORDINATES: similar to AA sequence:RefSeq:WP_008174760.1
COORDINATES: similar to AA sequence:RefSeq:WP_016427461.1
COORDINATES: similar to AA sequence:RefSeq:WP_009336075.1
PhzF family phenazine biosynthesis protein
COORDINATES: similar to AA sequence:RefSeq:WP_016763559.1
COORDINATES: similar to AA sequence:RefSeq:WP_018709024.1
COORDINATES: similar to AA sequence:RefSeq:WP_002137546.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013524771.1
COORDINATES: similar to AA sequence:RefSeq:WP_014195126.1
COORDINATES: similar to AA sequence:RefSeq:WP_006207932.1
COORDINATES: similar to AA sequence:RefSeq:WP_012818776.1
COORDINATES: similar to AA sequence:RefSeq:WP_020153568.1
COORDINATES: similar to AA sequence:RefSeq:WP_017437821.1
COORDINATES: similar to AA sequence:RefSeq:WP_011232740.1
COORDINATES: similar to AA sequence:RefSeq:WP_006679228.1
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005586246.1
COORDINATES: similar to AA sequence:RefSeq:WP_004433296.1
COORDINATES: similar to AA sequence:RefSeq:WP_012011466.1
GO:0004476 - mannose-6-phosphate isomerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076611321.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF018739.2
COORDINATES: similar to AA sequence:RefSeq:WP_017153458.1
GO:0016835 - carbon-oxygen lyase activity [Evidence IEA]
GO:0006040 - amino sugar metabolic process [Evidence IEA]; GO:0009254 - peptidoglycan turnover [Evidence IEA]
N-acetylmuramic acid 6-phosphate etherase
COORDINATES: similar to AA sequence:RefSeq:WP_013084384.1
GO:0009401 - phosphoenolpyruvate-dependent sugar phosphotransferase system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018393584.1
GO:0004342 - glucosamine-6-phosphate deaminase activity [Evidence IEA]
GO:0006046 - N-acetylglucosamine catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011887718.1
COORDINATES: similar to AA sequence:RefSeq:WP_019153039.1
COORDINATES: similar to AA sequence:RefSeq:WP_008881221.1
GO:0003973 - (S)-2-hydroxy-acid oxidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003396842.1
sugar diacid recognition domain-containing protein
COORDINATES: nucleotide motif:Rfam:14.4:RF00167
purine riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_000742448.1
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase
COORDINATES: similar to AA sequence:RefSeq:WP_016204228.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF012607.2
COORDINATES: similar to AA sequence:RefSeq:WP_018589951.1
GO:0004747 - ribokinase activity [Evidence IEA]
GO:0019303 - D-ribose catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016763175.1
COORDINATES: similar to AA sequence:RefSeq:WP_000218427.1
Rpn family recombination-promoting nuclease/putative transposase
COORDINATES: similar to AA sequence:RefSeq:WP_007723241.1
ribbon-helix-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019011189.1
COORDINATES: protein motif:HMM:NF013561.2
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: similar to AA sequence:RefSeq:WP_002172678.1
GO:0016791 - phosphatase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00556.1
GO:0008897 - holo-[acyl-carrier-protein] synthase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]
4'-phosphopantetheinyl transferase superfamily protein
COORDINATES: similar to AA sequence:RefSeq:WP_019119498.1
GO:0009847 - spore germination [Evidence IEA]
COORDINATES: protein motif:HMM:NF013625.2
peptidoglycan-binding domain-containing protein
COORDINATES: protein motif:HMM:NF024635.2
COORDINATES: similar to AA sequence:RefSeq:WP_001053939.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007083736.1
GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
DcuS/MalK family sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_017358952.1
COORDINATES: similar to AA sequence:RefSeq:WP_000528101.1
2-hydroxycarboxylate transporter family protein
COORDINATES: similar to AA sequence:RefSeq:WP_003331272.1
malic enzyme-like NAD(P)-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_003178602.1
FadR/GntR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_013056594.1
GO:0047448 - 5-dehydro-4-deoxyglucarate dehydratase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010281014.1
COORDINATES: similar to AA sequence:RefSeq:WP_011245325.1
GO:0008927 - mannonate dehydratase activity [Evidence IEA]
GO:0006064 - glucuronate catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF015366.2
tripartite tricarboxylate transporter substrate binding protein
COORDINATES: protein motif:HMM:NF018979.2
tripartite tricarboxylate transporter TctB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015256380.1
tripartite tricarboxylate transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_003184745.1
COORDINATES: similar to AA sequence:RefSeq:WP_007128604.1
COORDINATES: similar to AA sequence:RefSeq:WP_019379420.1
COORDINATES: similar to AA sequence:RefSeq:WP_019379421.1
GO:0030436 - asexual sporulation [Evidence IEA]; GO:0009847 - spore germination [Evidence IEA]
Ger(x)C family spore germination protein
COORDINATES: similar to AA sequence:RefSeq:WP_003178580.1
GO:0008658 - penicillin binding [Evidence IEA]
BlaR1 family beta-lactam sensor/signal transducer
COORDINATES: similar to AA sequence:RefSeq:WP_020449991.1
BlaI/MecI/CopY family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_006638594.1
GO:0008800 - beta-lactamase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019535775.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009593031.1
COORDINATES: similar to AA sequence:RefSeq:WP_019394379.1
GO:0015628 - protein secretion by the type II secretion system [Evidence IEA]
twin-arginine translocase TatA/TatE family subunit
COORDINATES: similar to AA sequence:RefSeq:WP_019394380.1
GO:0005886 - plasma membrane [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010280791.1
COORDINATES: similar to AA sequence:RefSeq:WP_010896612.1
COORDINATES: similar to AA sequence:RefSeq:WP_009334061.1
COORDINATES: similar to AA sequence:RefSeq:WP_019686057.1
COORDINATES: similar to AA sequence:RefSeq:WP_014570902.1
COORDINATES: protein motif:HMM:TIGR02887.1
COORDINATES: protein motif:HMM:TIGR00912.1
COORDINATES: similar to AA sequence:RefSeq:WP_016427941.1
COORDINATES: similar to AA sequence:RefSeq:WP_016643416.1
COORDINATES: similar to AA sequence:RefSeq:WP_010305630.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_009335132.1
COORDINATES: similar to AA sequence:RefSeq:WP_019424435.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_017687050.1
COORDINATES: similar to AA sequence:RefSeq:WP_010502673.1
COORDINATES: similar to AA sequence:RefSeq:WP_010502675.1
COORDINATES: nucleotide motif:Rfam:14.4:RF00162
SAM riboswitch class I; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_013056520.1
COORDINATES: similar to AA sequence:RefSeq:WP_000392022.1
helix-turn-helix domain-containing protein
COORDINATES: nucleotide motif:Rfam:14.4:RF00230
T-box leader; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:NP_391281.1
COORDINATES: similar to AA sequence:RefSeq:WP_007201608.1
COORDINATES: similar to AA sequence:RefSeq:WP_003183759.1
COORDINATES: similar to AA sequence:RefSeq:WP_019153733.1
COORDINATES: similar to AA sequence:RefSeq:WP_010199320.1
COORDINATES: similar to AA sequence:RefSeq:WP_013084110.1
COORDINATES: similar to AA sequence:RefSeq:WP_010198336.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016132579.1
COORDINATES: similar to AA sequence:RefSeq:WP_016102573.1
COORDINATES: similar to AA sequence:RefSeq:WP_016766143.1
COORDINATES: similar to AA sequence:RefSeq:WP_018706791.1
COORDINATES: similar to AA sequence:RefSeq:WP_000733134.1
COORDINATES: similar to AA sequence:RefSeq:WP_000926951.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004226539.1
COORDINATES: protein motif:HMM:NF012235.2
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009674810.1
COORDINATES: similar to AA sequence:RefSeq:WP_008175899.1
COORDINATES: similar to AA sequence:RefSeq:WP_016766247.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018392579.1
COORDINATES: similar to AA sequence:RefSeq:WP_000003042.1
COORDINATES: similar to AA sequence:RefSeq:WP_010097327.1
COORDINATES: protein motif:HMM:NF019887.2
COORDINATES: similar to AA sequence:RefSeq:WP_016427974.1
GO:0008276 - protein methyltransferase activity [Evidence IEA]; GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IEA]
GO:0018364 - peptidyl-glutamine methylation [Evidence IEA]
putative protein N(5)-glutamine methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_019390937.1
COORDINATES: protein motif:HMM:NF024685.2
COORDINATES: protein motif:HMM:NF013124.2
COORDINATES: protein motif:HMM:NF024698.2
COORDINATES: similar to AA sequence:RefSeq:WP_013918897.1
COORDINATES: similar to AA sequence:RefSeq:WP_019394394.1
COORDINATES: similar to AA sequence:RefSeq:WP_017728991.1
GO:0003824 - catalytic activity [Evidence IEA]
fumarylacetoacetate hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_003329309.1
COORDINATES: similar to AA sequence:RefSeq:WP_010677382.1
COORDINATES: similar to AA sequence:RefSeq:WP_008879968.1
COORDINATES: similar to AA sequence:RefSeq:WP_011344230.1
dihydrodipicolinate synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010492211.1
COORDINATES: protein motif:HMM:NF016047.2
cell wall-binding repeat-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009334013.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015252737.1
COORDINATES: similar to AA sequence:RefSeq:WP_007430417.1
COORDINATES: similar to AA sequence:RefSeq:WP_012994803.1
COORDINATES: protein motif:HMM:NF037716.2
COORDINATES: similar to AA sequence:RefSeq:WP_019257558.1
COORDINATES: similar to AA sequence:RefSeq:YP_003097781.1
COORDINATES: similar to AA sequence:RefSeq:NP_391145.1
COORDINATES: similar to AA sequence:RefSeq:WP_010194478.1
COORDINATES: similar to AA sequence:RefSeq:WP_000405934.1
COORDINATES: similar to AA sequence:RefSeq:WP_007084390.1
COORDINATES: similar to AA sequence:RefSeq:WP_009335752.1
COORDINATES: similar to AA sequence:RefSeq:WP_002066117.1
COORDINATES: similar to AA sequence:RefSeq:WP_010899760.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_019382150.1
COORDINATES: similar to AA sequence:RefSeq:WP_009330592.1
COORDINATES: similar to AA sequence:RefSeq:WP_019382149.1
COORDINATES: similar to AA sequence:RefSeq:WP_009330590.1
COORDINATES: similar to AA sequence:RefSeq:WP_009330589.1
COORDINATES: similar to AA sequence:RefSeq:WP_003348218.1
COORDINATES: similar to AA sequence:RefSeq:WP_003179681.1
COORDINATES: similar to AA sequence:RefSeq:WP_009334167.1
GO:0003735 - structural constituent of ribosome [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013057707.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009793340.1
COORDINATES: similar to AA sequence:RefSeq:WP_009362331.1
COORDINATES: similar to AA sequence:RefSeq:WP_003185231.1
four-helix bundle copper-binding protein
COORDINATES: protein motif:HMM:NF019351.2
COORDINATES: protein motif:HMM:NF024812.2
COORDINATES: similar to AA sequence:RefSeq:WP_019244321.1
GO:0004825 - methionine-tRNA ligase activity [Evidence IEA]
GO:0006431 - methionyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008403979.1
COORDINATES: similar to AA sequence:RefSeq:WP_003179194.1
COORDINATES: protein motif:HMM:NF025471.2
COORDINATES: similar to AA sequence:RefSeq:WP_016428721.1
COORDINATES: protein motif:HMM:NF012697.2
COORDINATES: similar to AA sequence:RefSeq:WP_003307746.1
COORDINATES: protein motif:HMM:NF021445.2
phosphatidylglycerol lysyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004233871.1
winged helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF013077.2
COORDINATES: similar to AA sequence:RefSeq:WP_017152221.1
COORDINATES: similar to AA sequence:RefSeq:WP_002100449.1
COORDINATES: similar to AA sequence:RefSeq:WP_001070983.1
COORDINATES: similar to AA sequence:RefSeq:WP_000067159.1
COORDINATES: similar to AA sequence:RefSeq:WP_000131217.1
isochorismate family cysteine hydrolase YcaC
COORDINATES: similar to AA sequence:RefSeq:WP_007408649.1
COORDINATES: similar to AA sequence:RefSeq:WP_002019659.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010333165.1
COORDINATES: similar to AA sequence:RefSeq:WP_019156272.1
COORDINATES: similar to AA sequence:RefSeq:WP_002087830.1
COORDINATES: similar to AA sequence:RefSeq:WP_001074328.1
COORDINATES: similar to AA sequence:RefSeq:WP_010334385.1
COORDINATES: similar to AA sequence:RefSeq:WP_003181209.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_013371168.1
COORDINATES: similar to AA sequence:RefSeq:WP_000658994.1
MarR family winged helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_003179175.1
COORDINATES: similar to AA sequence:RefSeq:WP_015594539.1
FMN-binding negative transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_009333693.1
COORDINATES: similar to AA sequence:RefSeq:WP_035203840.1
type A chloramphenicol O-acetyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_018393135.1
COORDINATES: protein motif:HMM:NF033788.1
COORDINATES: similar to AA sequence:RefSeq:WP_012294483.1
COORDINATES: similar to AA sequence:RefSeq:WP_016837935.1
GO:0008840 - 4-hydroxy-tetrahydrodipicolinate synthase activity [Evidence IEA]
GO:0009089 - lysine biosynthetic process via diaminopimelate [Evidence IEA]
4-hydroxy-tetrahydrodipicolinate synthase
COORDINATES: nucleotide motif:Rfam:14.4:RF00168
Lysine riboswitch is most abundant in Firmicutes and Gammaproteobacteria where they are found upstream of a number of genes involved in lysine biosynthesis, transport and catabolism; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_018392597.1
COORDINATES: similar to AA sequence:RefSeq:WP_008175923.1
COORDINATES: similar to AA sequence:RefSeq:WP_013058095.1
COORDINATES: similar to AA sequence:RefSeq:WP_012772594.1
COORDINATES: similar to AA sequence:RefSeq:WP_018860023.1
COORDINATES: similar to AA sequence:RefSeq:WP_019007168.1
GO:0033743 - peptide-methionine (R)-S-oxide reductase activity [Evidence IEA]
GO:0030091 - protein repair [Evidence IEA]; GO:0006979 - response to oxidative stress [Evidence IEA]
peptide-methionine (R)-S-oxide reductase MsrB
COORDINATES: similar to AA sequence:RefSeq:WP_017419211.1
COORDINATES: protein motif:HMM:NF019998.2
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]
GO:0005524 - ATP binding [Evidence IEA]; GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013540.2
COORDINATES: similar to AA sequence:RefSeq:WP_016428704.1
COORDINATES: similar to AA sequence:RefSeq:WP_016427177.1
phosphodiester glycosidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019713403.1
COORDINATES: similar to AA sequence:RefSeq:WP_019381986.1
COORDINATES: similar to AA sequence:RefSeq:WP_004436652.1
COORDINATES: similar to AA sequence:RefSeq:WP_004436650.1
COORDINATES: similar to AA sequence:RefSeq:WP_019635981.1
COORDINATES: protein motif:HMM:NF015783.2
COORDINATES: protein motif:HMM:NF013345.2
COORDINATES: protein motif:HMM:NF013038.2
COORDINATES: similar to AA sequence:RefSeq:WP_009361425.1
GO:0004066 - asparagine synthase (glutamine-hydrolyzing) activity [Evidence IEA]
GO:0006529 - asparagine biosynthetic process [Evidence IEA]
asparagine synthase (glutamine-hydrolyzing)
COORDINATES: similar to AA sequence:RefSeq:WP_012094302.1
COORDINATES: similar to AA sequence:RefSeq:WP_009333851.1
COORDINATES: similar to AA sequence:RefSeq:WP_009333852.1
COORDINATES: similar to AA sequence:RefSeq:WP_019382281.1
COORDINATES: similar to AA sequence:RefSeq:WP_001200329.1
COORDINATES: similar to AA sequence:RefSeq:WP_009333848.1
COORDINATES: similar to AA sequence:RefSeq:WP_013351107.1
COORDINATES: similar to AA sequence:RefSeq:WP_002189207.1
carboxymuconolactone decarboxylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010198432.1
GO:0033744 - L-methionine:thioredoxin-disulfide S-oxidoreductase activity [Evidence IEA]; GO:0008113 - peptide-methionine (S)-S-oxide reductase activity [Evidence IEA]
peptide-methionine (S)-S-oxide reductase MsrA
COORDINATES: similar to AA sequence:RefSeq:WP_015444236.1
COORDINATES: similar to AA sequence:RefSeq:WP_010198759.1
COORDINATES: similar to AA sequence:RefSeq:WP_020006828.1
COORDINATES: protein motif:HMM:NF008633.0
COORDINATES: protein motif:HMM:NF012738.2
COORDINATES: protein motif:HMM:NF013250.2
GO:0016780 - phosphotransferase activity, for other substituted phosphate groups [Evidence IEA]
GO:0008654 - phospholipid biosynthetic process [Evidence IEA]
CDP-alcohol phosphatidyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009333857.1
COORDINATES: similar to AA sequence:RefSeq:WP_008343226.1
COORDINATES: similar to AA sequence:RefSeq:WP_020153639.1
COORDINATES: similar to AA sequence:RefSeq:WP_013146500.1
COORDINATES: similar to AA sequence:RefSeq:WP_015592894.1
COORDINATES: similar to AA sequence:RefSeq:WP_017368160.1