Mixta hanseatica isolate X22927 plasmid pX22927_3, complete sequence.
type: Entry
definition: Mixta hanseatica isolate X22927 plasmid pX22927_3, complete sequence.
sequence version: NZ_CP082907.1
sequence date: 2023-06-25
sequence: sequence
division: CON
label: NZ_CP082907.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN20983042
keyword: RefSeq
source: Mixta hanseatica
organism: Mixta hanseatica
taxonomy: Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Erwiniaceae; Mixta.
reference: 1
references: 37090948
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP082907.1.\nBacteria and source DNA available from Labor Dr. Fenner und\nKollegen, Bergstrasse 14, Hamburg, Germany.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 2021\nAssembly Method :: Unicycler v. 0.4.9\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 105.0x\nSequencing Technology :: Illumina NextSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 06/25/2023 10:18:00\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,227\nCDSs (total) :: 4,114\nGenes (coding) :: 4,032\nCDSs (with protein) :: 4,032\nGenes (RNA) :: 113\nrRNAs :: 8, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 8, 7, 7 (5S, 16S, 23S)\ntRNAs :: 84\nncRNAs :: 7\nPseudo Genes (total) :: 82\nCDSs (without protein) :: 82\nPseudo Genes (ambiguous residues) :: 0 of 82\nPseudo Genes (frameshifted) :: 19 of 82\nPseudo Genes (incomplete) :: 53 of 82\nPseudo Genes (internal stop) :: 22 of 82\nPseudo Genes (multiple problems) :: 12 of 82\nPseudo Genes (short protein) :: 1 of 82\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 8411
topology: circular
so has quality: SO_0000988
location: 1..8411
location: region:1-8411:1
RO_0002162: 2872648

NZ_CP082907
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN20983042
type: BioSample
SIO_000068: biosample

1
title: First case of bloodstream infection caused by Mixta hanseatica sp. nov., a novel species within the Mixta genus of the Erwiniaceae family
author: Both, A.
author: Huang, J.
author: Wenzel, P.
author: Aepfelbacher, M.
author: Rohde, H.
author: Christner, M.
author: Hentschke, M.
journal: New Microbes New Infect 53, 101117 (2023)
pubmed: 37090948
comments: Publication Status: Online-Only

37090948
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Both, A.
author: Huang, J.
author: Wenzel, P.
author: Aepfelbacher, M.
author: Rohde, H.
author: Christner, M.
author: Hentschke, M.
journal: Submitted (02-SEP-2021) Institute of Medical Microbiology, Virology and Hygiene, University Medical Center Hamburg-Eppendorf, Martinistr. 52, Hamburg, Hamburg 20246, Germany

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8411:1
position: 8411
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-8411:1:source
so part of: sequence
organism: Mixta hanseatica
mol type: genomic DNA
isolate: X22927
isolation source: blood culture
host: Homo sapiens
type material: type strain of Mixta hanseatica
plasmid: pX22927_3
country: Germany
lat lon: 53.551086 N 9.993682 E
collection date: 2020
collected by: Moritz Hentschke

2872648
type: Taxonomy
SIO_000068: taxonomy

K6958_RS21060
type: Gene
subclass of: SO_0000704
RO_0002162: 2872648
locus tag: K6958_RS21060
old locus tag: K6958_21050
so part of: sequence
location: 602..1720
location: region:602-1720:1
so has part: feature:602-1720:1:exon
subclass of: SO_0000010

position:602:1
position: 602
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1720:1
position: 1720
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:602-1720:1:exon

K6958_RS21060
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2872648
locus tag: K6958_RS21060
old locus tag: K6958_21050
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010247497.1
GO function: GO:0010181 - FMN binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: alkene reductase
translation: MSSLFSPLNLGGFKLRNRIALPPLTRCRSNQPGNIPGDLMVEYYRQRASAGFMITEGTQIEPRGQGYAWTPGIHSEAQIAGWKKVTDAVHQENGTIFCQLWHVGRVSHNALQPGMAPPVAPSAITATGVRVFIETGPGEGILTAPSEPRELSTQEVKDIVELYRVAAENAKKAGFDGVELHSANGYLINQFISEHTNFRKDEYGGSLDNRLRFLREITEAVSSVFGSHRVGVRFAPLFSSTDEDRVYLGLVEKDPHDTYIRAAKILNDLGVGYLSIAEADWDNSPEMPESFRVALRKTFQSPIMYSGLYTQEKAERILEKGLGDLFGFGRSFIANPDLPERFKAGYPLNSTDRSSLYGGTEKGYTDYPVYYP
SIO_010081: K6958_RS21060
subclass of: SO_0000673
so part of: K6958_RS21060
location: 602..1720
location: region:602-1720:1
so has part: feature:602-1720:1:exon

WP_249894839.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:602-1720:1:exon

K6958_RS21065
type: Gene
subclass of: SO_0000704
RO_0002162: 2872648
locus tag: K6958_RS21065
old locus tag: K6958_21055
so part of: sequence
location: 1735..2049
location: region:1735-2049:1
so has part: feature:1735-2049:1:exon
subclass of: SO_0000010

position:1735:1
position: 1735
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2049:1
position: 2049
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1735-2049:1:exon

K6958_RS21065
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2872648
locus tag: K6958_RS21065
old locus tag: K6958_21055
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010247494.1
GO function: GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix transcriptional regulator
translation: MSPENAIKLLGNPTRVSILKWLKNPEEEFADYSQLFPFEKYGVCASLIQDKAGLSQPATSLCLKSLHDAGLLEAIKVGKWTYYRRSEFRIKKMTDAVIISLQQL
SIO_010081: K6958_RS21065
subclass of: SO_0000673
so part of: K6958_RS21065
location: 1735..2049
location: region:1735-2049:1
so has part: feature:1735-2049:1:exon

WP_094112305.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1735-2049:1:exon

K6958_RS21070
type: Gene
subclass of: SO_0000704
RO_0002162: 2872648
locus tag: K6958_RS21070
old locus tag: K6958_21060
so part of: sequence
location: complement(2172..2612)
location: region:2172-2612:-1
so has part: feature:2172-2612:-1:exon
subclass of: SO_0000010

position:2172:-1
position: 2172
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2612:-1
position: 2612
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2172-2612:-1:exon

K6958_RS21070
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2872648
locus tag: K6958_RS21070
old locus tag: K6958_21060
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSGIFLSLIDLQKLSAGARSEVLALIAEGVDEDVFEENGEGPTDLSSLQAEKLVRGLSSKSRSVLKAILENSDSSNGFWCEDLASELEVDVADLTGVWSGLTRRIRTVSGSSDAYLISWAWDDDRQDYYGKMHATTFKNCKKAVNI
SIO_010081: K6958_RS21070
subclass of: SO_0000673
so part of: K6958_RS21070
location: complement(2172..2612)
location: region:2172-2612:-1
so has part: feature:2172-2612:-1:exon

WP_249894840.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2172-2612:-1:exon

K6958_RS21075
type: Gene
subclass of: SO_0000704
RO_0002162: 2872648
locus tag: K6958_RS21075
old locus tag: K6958_21065
so part of: sequence
location: complement(3694..3879)
location: region:3694-3879:-1
so has part: feature:3694-3879:-1:exon
subclass of: SO_0000010

position:3694:-1
position: 3694
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3879:-1
position: 3879
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3694-3879:-1:exon

K6958_RS21075
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2872648
locus tag: K6958_RS21075
old locus tag: K6958_21065
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009092888.1
GO process: GO:0006950 - response to stress [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: general stress protein
translation: MSVRRGGASNFAENPERAAEVGQRGGRVSGGNFKNNPERAKEAGRKGGQISRRGPSRKSVS
SIO_010081: K6958_RS21075
subclass of: SO_0000673
so part of: K6958_RS21075
location: complement(3694..3879)
location: region:3694-3879:-1
so has part: feature:3694-3879:-1:exon

WP_249894841.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3694-3879:-1:exon

K6958_RS21080
type: Gene
subclass of: SO_0000704
RO_0002162: 2872648
locus tag: K6958_RS21080
old locus tag: K6958_21070
so part of: sequence
location: 4436..4675
location: region:4436-4675:1
so has part: feature:4436-4675:1:exon
subclass of: SO_0000010

position:4436:1
position: 4436
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4675:1
position: 4675
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4436-4675:1:exon

K6958_RS21080
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2872648
locus tag: K6958_RS21080
old locus tag: K6958_21070
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MYRNEDEKLSDIIMGEAVLELLDEIAPVTTSSLLLKLQAFLLREENANKEKAIRHAIDEVKAATERYSSATLVDAAIRH
SIO_010081: K6958_RS21080
subclass of: SO_0000673
so part of: K6958_RS21080
location: 4436..4675
location: region:4436-4675:1
so has part: feature:4436-4675:1:exon

WP_249894833.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4436-4675:1:exon

K6958_RS21085
type: Gene
subclass of: SO_0000704
RO_0002162: 2872648
locus tag: K6958_RS21085
old locus tag: K6958_21075
so part of: sequence
location: 5265..5906
location: region:5265-5906:1
so has part: feature:5265-5906:1:exon
subclass of: SO_0000010

position:5265:1
position: 5265
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5906:1
position: 5906
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5265-5906:1:exon

K6958_RS21085
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2872648
locus tag: K6958_RS21085
old locus tag: K6958_21075
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008925475.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDAKTLAVSVADGIASLPMDFYLGIERTFQDLSLSDGGRNIQRRNFGDDERMYRALNKLFRNRAILGQVAEMIIKDALSYLPDPALKKITDKLIGAATSLGSRQSMQLAITGYLGSKVVGGMMASTITKLSLRLWTGSLVGGIVLQGVLSRASAASRRLRHKNPELWSKLYILDFDMLYFLFEEPLANYIELGETLRKNPLKTEQFLGAIENL
SIO_010081: K6958_RS21085
subclass of: SO_0000673
so part of: K6958_RS21085
location: 5265..5906
location: region:5265-5906:1
so has part: feature:5265-5906:1:exon

WP_249894834.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5265-5906:1:exon

K6958_RS21090
type: Gene
subclass of: SO_0000704
RO_0002162: 2872648
locus tag: K6958_RS21090
old locus tag: K6958_21080
so part of: sequence
location: complement(6131..6364)
location: region:6131-6364:-1
so has part: feature:6131-6364:-1:exon
subclass of: SO_0000010

position:6131:-1
position: 6131
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6364:-1
position: 6364
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6131-6364:-1:exon

K6958_RS21090
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2872648
locus tag: K6958_RS21090
old locus tag: K6958_21080
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012669271.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF2442 domain-containing protein
translation: MSVSIKSAKFDPYNMWLQLSDGRVLGVPLTYFPALQNASAEQLASFELSPRGIHWSELNEDLSLQGLLSLQPLTPIR
SIO_010081: K6958_RS21090
subclass of: SO_0000673
so part of: K6958_RS21090
location: complement(6131..6364)
location: region:6131-6364:-1
so has part: feature:6131-6364:-1:exon

WP_249894835.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6131-6364:-1:exon

K6958_RS21095
type: Gene
subclass of: SO_0000704
RO_0002162: 2872648
locus tag: K6958_RS21095
old locus tag: K6958_21085
so part of: sequence
location: complement(7161..7562)
location: region:7161-7562:-1
so has part: feature:7161-7562:-1:exon
subclass of: SO_0000010

position:7161:-1
position: 7161
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7562:-1
position: 7562
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7161-7562:-1:exon

K6958_RS21095
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2872648
locus tag: K6958_RS21095
old locus tag: K6958_21085
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009310048.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
translation: MAKVSISEAARLTGKSRTTLHRLIKTGELSTCAGVRNSKMIDISELIRVFGDISSTTVEQPEEQVSGQRVTVSYTANEQLVHSLKQEVEHLRTLVSAQESHIDSLKQSLHLLEHKKETALPVLPAGKWWQFWK
SIO_010081: K6958_RS21095
subclass of: SO_0000673
so part of: K6958_RS21095
location: complement(7161..7562)
location: region:7161-7562:-1
so has part: feature:7161-7562:-1:exon

WP_249894836.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7161-7562:-1:exon

K6958_RS21100
type: Gene
subclass of: SO_0000704
RO_0002162: 2872648
locus tag: K6958_RS21100
old locus tag: K6958_21090
so part of: sequence
location: complement(7573..7752)
location: region:7573-7752:-1
so has part: feature:7573-7752:-1:exon
subclass of: SO_0000010

position:7573:-1
position: 7573
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7752:-1
position: 7752
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7573-7752:-1:exon

K6958_RS21100
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2872648
locus tag: K6958_RS21100
old locus tag: K6958_21090
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001041614.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Rop family plasmid primer RNA-binding protein
translation: MTKQQKTALNMAKFIQGQSLLLLEKLNELDLDTEADMCERLHEDAERLHACLLAKLNQE
SIO_010081: K6958_RS21100
subclass of: SO_0000673
so part of: K6958_RS21100
location: complement(7573..7752)
location: region:7573-7752:-1
so has part: feature:7573-7752:-1:exon

WP_249894837.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7573-7752:-1:exon

K6958_RS21105
type: Gene
subclass of: SO_0000704
RO_0002162: 2872648
locus tag: K6958_RS21105
old locus tag: K6958_21095
so part of: sequence
location: complement(7883..8095)
location: region:7883-8095:-1
so has part: feature:7883-8095:-1:exon
subclass of: SO_0000010

position:7883:-1
position: 7883
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8095:-1
position: 8095
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7883-8095:-1:exon

K6958_RS21105
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2872648
locus tag: K6958_RS21105
old locus tag: K6958_21095
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016947370.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAGRLHVVSKTEKQFLDDAVFAAERAKGKKLSGPEKKEVLRVAREQLLGQREAKAAKQARAEERQAAEFT
SIO_010081: K6958_RS21105
subclass of: SO_0000673
so part of: K6958_RS21105
location: complement(7883..8095)
location: region:7883-8095:-1
so has part: feature:7883-8095:-1:exon

WP_249894838.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7883-8095:-1:exon