Mixta hanseatica isolate X22927 plasmid pX22927_2, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Erwiniaceae; Mixta.
First case of bloodstream infection caused by Mixta hanseatica sp. nov., a novel species within the Mixta genus of the Erwiniaceae family
New Microbes New Infect 53, 101117 (2023)
Submitted (02-SEP-2021) Institute of Medical Microbiology, Virology and Hygiene, University Medical Center Hamburg-Eppendorf, Martinistr. 52, Hamburg, Hamburg 20246, Germany
REFSEQ INFORMATION: The reference sequence is identical to\nCP082906.1.\nBacteria and source DNA available from Labor Dr. Fenner und\nKollegen, Bergstrasse 14, Hamburg, Germany.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 2021\nAssembly Method :: Unicycler v. 0.4.9\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 105.0x\nSequencing Technology :: Illumina NextSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 06/25/2023 10:18:00\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,227\nCDSs (total) :: 4,114\nGenes (coding) :: 4,032\nCDSs (with protein) :: 4,032\nGenes (RNA) :: 113\nrRNAs :: 8, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 8, 7, 7 (5S, 16S, 23S)\ntRNAs :: 84\nncRNAs :: 7\nPseudo Genes (total) :: 82\nCDSs (without protein) :: 82\nPseudo Genes (ambiguous residues) :: 0 of 82\nPseudo Genes (frameshifted) :: 19 of 82\nPseudo Genes (incomplete) :: 53 of 82\nPseudo Genes (internal stop) :: 22 of 82\nPseudo Genes (multiple problems) :: 12 of 82\nPseudo Genes (short protein) :: 1 of 82\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_014710721.1
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006270 - DNA replication initiation [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_000288043.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
LuxR C-terminal-related transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_006882106.1
COORDINATES: similar to AA sequence:RefSeq:WP_000241899.1
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_001172952.1
COORDINATES: similar to AA sequence:RefSeq:WP_000796685.1
COORDINATES: similar to AA sequence:RefSeq:WP_006882102.1
COORDINATES: similar to AA sequence:RefSeq:WP_012443165.1
COORDINATES: similar to AA sequence:RefSeq:WP_000476773.1
COORDINATES: similar to AA sequence:RefSeq:WP_000722128.1
TrbG/VirB9 family P-type conjugative transfer protein
COORDINATES: similar to AA sequence:RefSeq:WP_006882093.1
COORDINATES: similar to AA sequence:RefSeq:WP_001005926.1
GO:0043684 - type IV secretion system complex [Evidence IEA]
GO:0044097 - secretion by the type IV secretion system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001177101.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_000849236.1
TrbM/KikA/MpfK family conjugal transfer protein
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_006882087.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]
GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000004210.1
H-NS family nucleoid-associated regulatory protein
COORDINATES: similar to AA sequence:RefSeq:WP_006882086.1
COORDINATES: similar to AA sequence:RefSeq:WP_006882085.1
COORDINATES: similar to AA sequence:RefSeq:WP_014710726.1
COORDINATES: similar to AA sequence:RefSeq:WP_000791646.1
COORDINATES: similar to AA sequence:RefSeq:WP_000027026.1
COORDINATES: similar to AA sequence:RefSeq:WP_006878598.1
COORDINATES: similar to AA sequence:RefSeq:WP_000729819.1
COORDINATES: similar to AA sequence:RefSeq:WP_000823564.1
COORDINATES: similar to AA sequence:RefSeq:WP_006878586.1
COORDINATES: similar to AA sequence:RefSeq:WP_001043198.1
COORDINATES: similar to AA sequence:RefSeq:WP_000847771.1
COORDINATES: similar to AA sequence:RefSeq:WP_001081415.1
COORDINATES: similar to AA sequence:RefSeq:WP_000359238.1
Hha/YmoA family nucleoid-associated regulatory protein
COORDINATES: similar to AA sequence:RefSeq:WP_001148152.1
COORDINATES: similar to AA sequence:RefSeq:WP_014710729.1
COORDINATES: similar to AA sequence:RefSeq:WP_001018983.1
COORDINATES: similar to AA sequence:RefSeq:WP_001157192.1
ribbon-helix-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_000376639.1
COORDINATES: similar to AA sequence:RefSeq:WP_001051252.1
COORDINATES: similar to AA sequence:RefSeq:WP_006882065.1
COORDINATES: similar to AA sequence:RefSeq:WP_006882064.1
COORDINATES: similar to AA sequence:RefSeq:WP_001093608.1
COORDINATES: similar to AA sequence:RefSeq:WP_006882056.1
COORDINATES: similar to AA sequence:RefSeq:WP_000246370.1
COORDINATES: similar to AA sequence:RefSeq:WP_006882053.1
COORDINATES: similar to AA sequence:RefSeq:WP_006882051.1
COORDINATES: similar to AA sequence:RefSeq:WP_006882049.1
COORDINATES: similar to AA sequence:RefSeq:WP_000785685.1
COORDINATES: similar to AA sequence:RefSeq:WP_000421118.1
COORDINATES: similar to AA sequence:RefSeq:WP_000570802.1