Azospirillum oryzae strain KACC 14407 plasmid unnamed4, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodospirillales; Azospirillaceae; Azospirillum.
Complete genome of Azosprillum oryzae KACC14407
Submitted (08-JUN-2020) College of Agriculture and Life Sciences, Kyungpook National University, Daehak-ro, Daegu 41566, South Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP054618.1.\nBacteria and source DNA available from Shin's Lab.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 08-JUN-2020\nAssembly Method :: HGAP v. 4\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 149.0x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/06/2023 05:27:22\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 6,126\nCDSs (total) :: 6,022\nGenes (coding) :: 5,944\nCDSs (with protein) :: 5,944\nGenes (RNA) :: 104\nrRNAs :: 7, 8, 8 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 8, 8 (5S, 16S, 23S)\ntRNAs :: 77\nncRNAs :: 4\nPseudo Genes (total) :: 78\nCDSs (without protein) :: 78\nPseudo Genes (ambiguous residues) :: 0 of 78\nPseudo Genes (frameshifted) :: 18 of 78\nPseudo Genes (incomplete) :: 62 of 78\nPseudo Genes (internal stop) :: 10 of 78\nPseudo Genes (multiple problems) :: 12 of 78\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
GO:0019867 - outer membrane [Evidence IEA]
GO:0015343 - siderophore-iron transmembrane transporter activity [Evidence IEA]
GO:0015891 - siderophore transport [Evidence IEA]
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_006163262.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
lysine N(6)-hydroxylase/L-ornithine N(5)-oxygenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011796768.1
GO:0016746 - acyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007895642.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:1904680 - peptide transmembrane transporter activity [Evidence IEA]
GO:0015833 - peptide transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF012873.2
COORDINATES: similar to AA sequence:RefSeq:WP_004274284.1
diaminobutyrate--2-oxoglutarate transaminase
COORDINATES: similar to AA sequence:RefSeq:WP_006029593.1
COORDINATES: similar to AA sequence:RefSeq:WP_017189275.1
GO:0051213 - dioxygenase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007895669.1
COORDINATES: protein motif:HMM:TIGR01733.1
amino acid adenylation domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012978129.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012978130.1
GO:0016301 - kinase activity [Evidence IEA]
type II toxin-antitoxin system death-on-curing family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_016556062.1
COORDINATES: similar to AA sequence:RefSeq:WP_018247052.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_012976461.1
COORDINATES: protein motif:HMM:NF012245.2
GO:0007165 - signal transduction [Evidence IEA]
HAMP domain-containing methyl-accepting chemotaxis protein
COORDINATES: similar to AA sequence:RefSeq:WP_012976463.1
COORDINATES: similar to AA sequence:RefSeq:WP_012976464.1
putative DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010097052.1
COORDINATES: similar to AA sequence:RefSeq:WP_012976466.1
COORDINATES: protein motif:HMM:NF012787.2
COORDINATES: protein motif:HMM:NF015431.2
GO:0001216 - DNA-binding transcription activator activity [Evidence IEA]
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076611960.1
GO:0015074 - DNA integration [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
integrase core domain-containing protein
COORDINATES: protein motif:HMM:NF012464.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076612078.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: nucleotide motif:Rfam:14.4:RF01497
AL1L pseudoknot; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_007538273.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013692057.1
COORDINATES: similar to AA sequence:RefSeq:WP_010446356.1
COORDINATES: similar to AA sequence:RefSeq:WP_014197514.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_011385785.1
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]; GO:0042908 - xenobiotic transport [Evidence IEA]
multidrug efflux RND transporter permease subunit
COORDINATES: similar to AA sequence:RefSeq:WP_008993201.1
nuclear transport factor 2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012973766.1
COORDINATES: similar to AA sequence:RefSeq:WP_014248685.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011650105.1
COORDINATES: similar to AA sequence:RefSeq:WP_009764916.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012040544.1
COORDINATES: protein motif:HMM:TIGR00180.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_014200331.1
COORDINATES: similar to AA sequence:RefSeq:WP_014199546.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189218.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007923691.1
COORDINATES: similar to AA sequence:RefSeq:WP_014248321.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019402385.1
COORDINATES: similar to AA sequence:RefSeq:WP_014242601.1
COORDINATES: similar to AA sequence:RefSeq:WP_014248324.1
COORDINATES: similar to AA sequence:RefSeq:WP_014248325.1
COORDINATES: similar to AA sequence:RefSeq:WP_014242598.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_008530375.1
LysR substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015930011.1
ribulose-bisphosphate carboxylase large subunit family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009490241.1
four-carbon acid sugar kinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012331636.1
TRAP transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_014198596.1
GO:0004743 - pyruvate kinase activity [Evidence IEA]
GO:0006096 - glycolytic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020093579.1
COORDINATES: similar to AA sequence:RefSeq:WP_019427118.1
COORDINATES: similar to AA sequence:RefSeq:WP_008134283.1
glutathione S-transferase family protein
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:TIGR04534.1
COORDINATES: similar to AA sequence:RefSeq:WP_011425412.1
GO:0016787 - hydrolase activity [Evidence IEA]
gamma-glutamyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012976890.1
COORDINATES: similar to AA sequence:RefSeq:WP_007607600.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_012976892.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012976893.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012976894.1
COORDINATES: similar to AA sequence:RefSeq:WP_012976895.1
GO:0008783 - agmatinase activity [Evidence IEA]
GO:0008295 - spermidine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007199538.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO:0008483 - transaminase activity [Evidence IEA]
aminotransferase class III-fold pyridoxal phosphate-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_007012845.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: protein motif:HMM:NF014035.2
sulfite exporter TauE/SafE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012318745.1
COORDINATES: similar to AA sequence:RefSeq:WP_010090558.1
taurine ABC transporter ATP-binding subunit
COORDINATES: similar to AA sequence:RefSeq:WP_006162102.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0009897 - external side of plasma membrane [Evidence IEA]; GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0015411 - ABC-type taurine transporter transporter activity [Evidence IEA]; GO:0030977 - taurine binding [Evidence IEA]
GO:0015734 - taurine transport [Evidence IEA]
taurine ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_012321667.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
PLP-dependent aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007635327.1
COORDINATES: protein motif:HMM:NF013122.2
GO:0008408 - 3'-5' exonuclease activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011646078.1
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: similar to AA sequence:RefSeq:WP_015666618.1
COORDINATES: similar to AA sequence:RefSeq:WP_014250354.1
GO:0016788 - hydrolase activity, acting on ester bonds [Evidence IEA]
succinylglutamate desuccinylase/aspartoacylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019998687.1
COORDINATES: similar to AA sequence:RefSeq:WP_018316394.1
COORDINATES: similar to AA sequence:RefSeq:WP_004580262.1
COORDINATES: similar to AA sequence:RefSeq:WP_020667767.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009028947.1
COORDINATES: similar to AA sequence:RefSeq:WP_008111182.1
COORDINATES: similar to AA sequence:RefSeq:WP_013542202.1
COORDINATES: similar to AA sequence:RefSeq:WP_003517037.1
COORDINATES: similar to AA sequence:RefSeq:WP_008973618.1
GO:0004040 - amidase activity [Evidence IEA]
GO:0006807 - nitrogen compound metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007615930.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018387091.1
COORDINATES: similar to AA sequence:RefSeq:WP_020185844.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0033221 - ATPase-coupled urea transmembrane transporter activity [Evidence IEA]; GO:0033219 - urea binding [Evidence IEA]
GO:0015840 - urea transport [Evidence IEA]
urea ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_009735555.1
GO:0033221 - ATPase-coupled urea transmembrane transporter activity [Evidence IEA]
urea ABC transporter permease subunit UrtB
COORDINATES: similar to AA sequence:RefSeq:WP_012322398.1
urea ABC transporter permease subunit UrtC
COORDINATES: similar to AA sequence:RefSeq:WP_009208017.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0009898 - cytoplasmic side of plasma membrane [Evidence IEA]
GO:0005524 - ATP binding [Evidence IEA]; GO:0033221 - ATPase-coupled urea transmembrane transporter activity [Evidence IEA]
urea ABC transporter ATP-binding protein UrtD
COORDINATES: similar to AA sequence:RefSeq:WP_018644392.1
urea ABC transporter ATP-binding subunit UrtE
COORDINATES: similar to AA sequence:RefSeq:WP_002937845.1
COORDINATES: similar to AA sequence:RefSeq:WP_011156820.1
COORDINATES: similar to AA sequence:RefSeq:WP_012334236.1
GO:0070403 - NAD+ binding [Evidence IEA]
GO:0006631 - fatty acid metabolic process [Evidence IEA]
3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012976247.1
GO:0008927 - mannonate dehydratase activity [Evidence IEA]
GO:0006064 - glucuronate catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012976246.1
GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012976245.1
COORDINATES: similar to AA sequence:RefSeq:WP_006218812.1
COORDINATES: similar to AA sequence:RefSeq:WP_018434656.1
COORDINATES: similar to AA sequence:RefSeq:WP_012590828.1
COORDINATES: protein motif:HMM:NF013757.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006156695.1
COORDINATES: similar to AA sequence:RefSeq:WP_015934003.1
GO:0046912 - acyltransferase activity, acyl groups converted into alkyl on transfer [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009208004.1
GO:0016740 - transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013959012.1
COORDINATES: similar to AA sequence:RefSeq:WP_015665048.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189497.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189498.1
COORDINATES: similar to AA sequence:RefSeq:WP_012416771.1
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0015658 - branched-chain amino acid transmembrane transporter activity [Evidence IEA]
branched-chain amino acid ABC transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_013528526.1
GO:0015803 - branched-chain amino acid transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004272579.1
GO:0009055 - electron transfer activity [Evidence IEA]
electron transfer flavoprotein subunit beta/FixA family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014247912.1
COORDINATES: similar to AA sequence:RefSeq:WP_009043756.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013530453.1
GO:0008777 - acetylornithine deacetylase activity [Evidence IEA]
GO:0006592 - ornithine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010970140.1
GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014199764.1
COORDINATES: similar to AA sequence:RefSeq:WP_014199765.1
COORDINATES: similar to AA sequence:RefSeq:WP_014199766.1
COORDINATES: similar to AA sequence:RefSeq:WP_014199767.1
COORDINATES: similar to AA sequence:RefSeq:WP_014199768.1
COORDINATES: similar to AA sequence:RefSeq:WP_014199769.1
COORDINATES: similar to AA sequence:RefSeq:WP_014199770.1
GO:0016829 - lyase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_086558310.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_002966338.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013165979.1
GO:0004129 - cytochrome-c oxidase activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
GO:0009060 - aerobic respiration [Evidence IEA]
cbb3-type cytochrome c oxidase subunit I
COORDINATES: similar to AA sequence:RefSeq:WP_019402857.1
COORDINATES: similar to AA sequence:RefSeq:WP_014199529.1
COORDINATES: protein motif:HMM:NF025013.2
COORDINATES: protein motif:HMM:NF040453.1
COORDINATES: similar to AA sequence:RefSeq:WP_012978072.1
COORDINATES: similar to AA sequence:RefSeq:WP_012978071.1
lysophospholipid acyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_020181283.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0016780 - phosphotransferase activity, for other substituted phosphate groups [Evidence IEA]
GO:0008654 - phospholipid biosynthetic process [Evidence IEA]
CDP-alcohol phosphatidyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012978069.1
acyl-[ACP]--phospholipid O-acyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_014242475.1
COORDINATES: similar to AA sequence:RefSeq:WP_012978067.1
COORDINATES: similar to AA sequence:RefSeq:WP_012978066.1
COORDINATES: similar to AA sequence:RefSeq:WP_012978065.1
glutathionylspermidine synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008190782.1
COORDINATES: similar to AA sequence:RefSeq:WP_012978063.1
GO:0004516 - nicotinate phosphoribosyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012978062.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003952 - NAD+ synthase (glutamine-hydrolyzing) activity [Evidence IEA]
GO:0009435 - NAD biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012978061.1
bifunctional nicotinamide-nucleotide adenylyltransferase/Nudix hydroxylase
COORDINATES: similar to AA sequence:RefSeq:WP_015014923.1
GO:0043565 - sequence-specific DNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012976507.1
COORDINATES: similar to AA sequence:RefSeq:WP_012976506.1
COORDINATES: similar to AA sequence:RefSeq:WP_012976505.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018647595.1
COORDINATES: similar to AA sequence:RefSeq:WP_012976503.1
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011471314.1
COORDINATES: similar to AA sequence:RefSeq:WP_006018911.1
COORDINATES: similar to AA sequence:RefSeq:WP_006018912.1
COORDINATES: similar to AA sequence:RefSeq:WP_011471317.1
COORDINATES: similar to AA sequence:RefSeq:WP_015014913.1
COORDINATES: similar to AA sequence:RefSeq:WP_010660566.1
COORDINATES: similar to AA sequence:RefSeq:WP_012977279.1
COORDINATES: similar to AA sequence:RefSeq:WP_012977280.1
GO:0005886 - plasma membrane [Evidence IEA]; GO:0031317 - tripartite ATP-independent periplasmic transporter complex [Evidence IEA]
GO:0015556 - C4-dicarboxylate transmembrane transporter activity [Evidence IEA]
GO:0015740 - C4-dicarboxylate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012977281.1
COORDINATES: similar to AA sequence:RefSeq:WP_012977282.1
GO:0004764 - shikimate 3-dehydrogenase (NADP+) activity [Evidence IEA]
GO:0019632 - shikimate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013689365.1
GO:0003855 - 3-dehydroquinate dehydratase activity [Evidence IEA]
GO:0009423 - chorismate biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013210417.1
sugar phosphate isomerase/epimerase and 4-hydroxyphenylpyruvate domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007749076.1
choline ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_014087210.1
GO:0008484 - sulfuric ester hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014005392.1
COORDINATES: similar to AA sequence:RefSeq:WP_009520214.1
COORDINATES: similar to AA sequence:RefSeq:WP_009520210.1
GO:0004420 - hydroxymethylglutaryl-CoA reductase (NADPH) activity [Evidence IEA]
GO:0016054 - organic acid catabolic process [Evidence IEA]
hydroxymethylglutaryl-CoA reductase, degradative
COORDINATES: similar to AA sequence:RefSeq:WP_019404706.1
COORDINATES: similar to AA sequence:RefSeq:WP_013762357.1
COORDINATES: similar to AA sequence:RefSeq:WP_020811984.1
COORDINATES: similar to AA sequence:RefSeq:WP_015342778.1
COORDINATES: similar to AA sequence:RefSeq:WP_003505488.1
COORDINATES: similar to AA sequence:RefSeq:WP_004110656.1
COORDINATES: similar to AA sequence:RefSeq:WP_014199474.1
COORDINATES: similar to AA sequence:RefSeq:WP_014199475.1
COORDINATES: similar to AA sequence:RefSeq:WP_014199476.1
GO:0015267 - channel activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012477253.1
COORDINATES: similar to AA sequence:RefSeq:WP_012978201.1
GO:0000156 - phosphorelay response regulator activity [Evidence IEA]; GO:0008984 - protein-glutamate methylesterase activity [Evidence IEA]
GO:0006935 - chemotaxis [Evidence IEA]; GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014199477.1
GO:0016989 - sigma factor antagonist activity [Evidence IEA]; GO:0004888 - transmembrane signaling receptor activity [Evidence IEA]
GO:0006811 - monoatomic ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014199478.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_011445226.1
COORDINATES: similar to AA sequence:RefSeq:WP_004941666.1
COORDINATES: similar to AA sequence:RefSeq:WP_020562757.1
COORDINATES: similar to AA sequence:RefSeq:WP_020066294.1
COORDINATES: similar to AA sequence:RefSeq:WP_012523724.1
COORDINATES: similar to AA sequence:RefSeq:WP_008969142.1
COORDINATES: similar to AA sequence:RefSeq:WP_018070824.1
ABC-F family ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018096545.1
COORDINATES: similar to AA sequence:RefSeq:WP_018236340.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0000156 - phosphorelay response regulator activity [Evidence IEA]; GO:0004673 - protein histidine kinase activity [Evidence IEA]
HAMP domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_003569140.1
COORDINATES: similar to AA sequence:RefSeq:WP_007436307.1
COORDINATES: similar to AA sequence:RefSeq:WP_015243466.1
GO:0015036 - disulfide oxidoreductase activity [Evidence IEA]
GO:0017004 - cytochrome complex assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013956674.1
COORDINATES: similar to AA sequence:RefSeq:WP_018857308.1
GO:0016034 - maleylacetoacetate isomerase activity [Evidence IEA]
GO:0006559 - L-phenylalanine catabolic process [Evidence IEA]; GO:0006572 - tyrosine catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011428506.1
COORDINATES: protein motif:HMM:NF019310.2
COORDINATES: similar to AA sequence:RefSeq:WP_007738732.1
COORDINATES: similar to AA sequence:RefSeq:WP_007738748.1
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]
glycine betaine/L-proline ABC transporter substrate-binding protein ProX
COORDINATES: similar to AA sequence:RefSeq:WP_013690832.1
proline/glycine betaine ABC transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_008001671.1
glycine betaine/L-proline ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_019169963.1
COORDINATES: similar to AA sequence:RefSeq:WP_003219479.1
GO:0051920 - peroxiredoxin activity [Evidence IEA]
carboxymuconolactone decarboxylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011428502.1
COORDINATES: similar to AA sequence:RefSeq:WP_007178108.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
LLM class flavin-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_016735745.1
COORDINATES: similar to AA sequence:RefSeq:WP_019863586.1
COORDINATES: similar to AA sequence:RefSeq:WP_014249967.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188990.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188989.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188988.1
COORDINATES: similar to AA sequence:RefSeq:WP_003251112.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188986.1
COORDINATES: similar to AA sequence:RefSeq:WP_003251117.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188984.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188983.1
COORDINATES: similar to AA sequence:RefSeq:WP_012051873.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188981.1
programmed frameshift; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012977481.1
COORDINATES: similar to AA sequence:RefSeq:WP_017245409.1
COORDINATES: similar to AA sequence:RefSeq:WP_007893114.1
COORDINATES: similar to AA sequence:RefSeq:WP_010219329.1
COORDINATES: similar to AA sequence:RefSeq:WP_014199807.1
GO:0016747 - acyltransferase activity, transferring groups other than amino-acyl groups [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011471309.1
COORDINATES: similar to AA sequence:RefSeq:WP_011471308.1
GO:0008410 - CoA-transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011389226.1
COORDINATES: similar to AA sequence:RefSeq:WP_008386146.1
acetoacetate metabolism transcriptional regulator AtoC
COORDINATES: similar to AA sequence:RefSeq:WP_008386145.1
two-component system sensor histidine kinase AtoS
COORDINATES: similar to AA sequence:RefSeq:WP_012978192.1
COORDINATES: similar to AA sequence:RefSeq:WP_012978190.1
COORDINATES: protein motif:HMM:NF013502.2
COORDINATES: similar to AA sequence:RefSeq:WP_013837201.1
COORDINATES: similar to AA sequence:RefSeq:WP_012978016.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0000976 - transcription cis-regulatory region binding [Evidence IEA]
GO:0006351 - DNA-templated transcription [Evidence IEA]; GO:0045892 - negative regulation of DNA-templated transcription [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_007761997.1
GO:0009436 - glyoxylate catabolic process [Evidence IEA]; GO:0071704 - organic substance metabolic process [Evidence IEA]
dihydrodipicolinate synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012978018.1
COORDINATES: similar to AA sequence:RefSeq:WP_014246561.1
GO:0015288 - porin activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013698.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_032492267.1
COORDINATES: similar to AA sequence:RefSeq:WP_015436610.1
GO:0015444 - P-type magnesium transporter activity [Evidence IEA]
GO:0015693 - magnesium ion transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF021438.2
COORDINATES: similar to AA sequence:RefSeq:WP_012973751.1
GO:0046872 - metal ion binding [Evidence IEA]; GO:0016717 - oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water [Evidence IEA]
GO:0006633 - fatty acid biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012650493.1
COORDINATES: similar to AA sequence:RefSeq:WP_012640573.1
COORDINATES: protein motif:HMM:NF012955.2
COORDINATES: similar to AA sequence:RefSeq:WP_012427292.1
COORDINATES: similar to AA sequence:RefSeq:WP_004631314.1
COORDINATES: similar to AA sequence:RefSeq:WP_006160707.1
COORDINATES: similar to AA sequence:RefSeq:WP_013952760.1
COORDINATES: similar to AA sequence:RefSeq:WP_019654707.1
COORDINATES: similar to AA sequence:RefSeq:WP_012247310.1
COORDINATES: similar to AA sequence:RefSeq:WP_018314732.1
COORDINATES: similar to AA sequence:RefSeq:WP_017847742.1
GO:0047420 - N-acyl-D-amino-acid deacylase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007674967.1
COORDINATES: similar to AA sequence:RefSeq:WP_012426124.1
COORDINATES: similar to AA sequence:RefSeq:WP_011515550.1
GO:0008718 - D-amino-acid dehydrogenase activity [Evidence IEA]; GO:0071949 - FAD binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
GO:0055130 - D-alanine catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019013605.1
COORDINATES: similar to AA sequence:RefSeq:WP_017263473.1
COORDINATES: similar to AA sequence:RefSeq:WP_018237564.1
COORDINATES: similar to AA sequence:RefSeq:WP_019015445.1
COORDINATES: protein motif:HMM:NF013584.2
COORDINATES: protein motif:HMM:NF024808.2
COORDINATES: protein motif:HMM:NF013539.2
MurR/RpiR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_076611376.1
COORDINATES: similar to AA sequence:RefSeq:WP_009488988.1
COORDINATES: similar to AA sequence:RefSeq:WP_015898566.1
COORDINATES: similar to AA sequence:RefSeq:WP_014242719.1
COORDINATES: similar to AA sequence:RefSeq:WP_008965631.1
COORDINATES: similar to AA sequence:RefSeq:WP_011766151.1
COORDINATES: similar to AA sequence:RefSeq:WP_018991097.1
fumarylacetoacetate hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014087191.1
COORDINATES: similar to AA sequence:RefSeq:WP_020653854.1
COORDINATES: similar to AA sequence:RefSeq:WP_011665599.1
COORDINATES: similar to AA sequence:RefSeq:WP_011300130.1
COORDINATES: similar to AA sequence:RefSeq:WP_010398393.1
COORDINATES: similar to AA sequence:RefSeq:WP_019922317.1
COORDINATES: similar to AA sequence:RefSeq:WP_011300133.1
COORDINATES: similar to AA sequence:RefSeq:WP_004358029.1
COORDINATES: similar to AA sequence:RefSeq:WP_007181778.1
COORDINATES: similar to AA sequence:RefSeq:WP_015013783.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0005215 - transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020203448.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015918339.1
COORDINATES: similar to AA sequence:RefSeq:WP_015918340.1
COORDINATES: similar to AA sequence:RefSeq:WP_012977023.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611158.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189786.1
GO:0016151 - nickel cation binding [Evidence IEA]
nickel-dependent hydrogenase large subunit
COORDINATES: similar to AA sequence:RefSeq:WP_014189068.1
COORDINATES: similar to AA sequence:RefSeq:WP_012976985.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189070.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189071.1
GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO:0008137 - NADH dehydrogenase (ubiquinone) activity [Evidence IEA]; GO:0048038 - quinone binding [Evidence IEA]
NADH-quinone oxidoreductase subunit NuoB
COORDINATES: similar to AA sequence:RefSeq:WP_012976982.1
proton-conducting transporter membrane subunit
COORDINATES: similar to AA sequence:RefSeq:WP_014189073.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189074.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189075.1
aldehyde ferredoxin oxidoreductase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012976978.1
4Fe-4S dicluster domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012976977.1
GO:0008901 - ferredoxin hydrogenase activity [Evidence IEA]
GO:0036211 - protein modification process [Evidence IEA]
hydrogenase maturation nickel metallochaperone HypA
COORDINATES: similar to AA sequence:RefSeq:WP_007918069.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188825.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188824.1
COORDINATES: similar to AA sequence:RefSeq:WP_002723944.1
COORDINATES: similar to AA sequence:RefSeq:WP_014198994.1
GO:0003858 - 3-hydroxybutyrate dehydrogenase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007675244.1
3-keto-5-aminohexanoate cleavage protein
COORDINATES: similar to AA sequence:RefSeq:WP_014198991.1
COORDINATES: similar to AA sequence:RefSeq:WP_014198990.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0008134 - transcription factor binding [Evidence IEA]
sigma 54-interacting transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_014249137.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_008346249.1
COORDINATES: similar to AA sequence:RefSeq:WP_008493516.1
COORDINATES: similar to AA sequence:RefSeq:WP_009755961.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188514.1
GO:0016840 - carbon-nitrogen lyase activity [Evidence IEA]
GO:0016051 - carbohydrate biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014188515.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188516.1
glycine betaine ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_014188517.1
aromatic ring-hydroxylating dioxygenase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_014188518.1
hybrid-cluster NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_014188519.1
COORDINATES: similar to AA sequence:RefSeq:WP_020186977.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188521.1
COORDINATES: similar to AA sequence:RefSeq:WP_012977305.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]
electron transfer flavoprotein subunit alpha/FixB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014188523.1
electron transfer flavoprotein subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_014188524.1
GO:0031460 - glycine betaine transport [Evidence IEA]
glycine betaine/L-proline ABC transporter ATP-binding protein ProV
COORDINATES: similar to AA sequence:RefSeq:WP_014188525.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188526.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014188527.1
GO:0046820 - 4-amino-4-deoxychorismate synthase activity [Evidence IEA]
GO:0009396 - folic acid-containing compound biosynthetic process [Evidence IEA]; GO:0008153 - para-aminobenzoic acid biosynthetic process [Evidence IEA]
aminodeoxychorismate synthase component I
COORDINATES: similar to AA sequence:RefSeq:WP_014188528.1
GO:0032784 - regulation of DNA-templated transcription elongation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014188529.1
hydantoinase/oxoprolinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014188530.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012591390.1
GO:0000105 - histidine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009521614.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188533.1
triphosphoribosyl-dephospho-CoA synthase
COORDINATES: similar to AA sequence:RefSeq:WP_014188534.1
GO:0016881 - acid-amino acid ligase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014188535.1
GO:0018759 - methenyltetrahydromethanopterin cyclohydrolase activity [Evidence IEA]
GO:0006730 - one-carbon metabolic process [Evidence IEA]
methenyltetrahydromethanopterin cyclohydrolase
COORDINATES: similar to AA sequence:RefSeq:WP_014188536.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188537.1
methylenetetrahydromethanopterin dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_014188538.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188539.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188540.1
formylmethanofuran dehydrogenase subunit A
COORDINATES: similar to AA sequence:RefSeq:WP_014188541.1
formylmethanofuran--tetrahydromethanopterin N-formyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_014188542.1
GO:0018493 - formylmethanofuran dehydrogenase activity [Evidence IEA]
GO:0015948 - methanogenesis [Evidence IEA]
formylmethanofuran dehydrogenase subunit C
COORDINATES: similar to AA sequence:RefSeq:WP_012977311.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188544.1
GO:0004150 - dihydroneopterin aldolase activity [Evidence IEA]
GO:0046656 - folic acid biosynthetic process [Evidence IEA]; GO:0006760 - folic acid-containing compound metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014188545.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188546.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188547.1
COORDINATES: similar to AA sequence:RefSeq:WP_012116067.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188549.1
(5-formylfuran-3-yl)methyl phosphate synthase
COORDINATES: protein motif:HMM:NF023232.2
COORDINATES: protein motif:HMM:NF015863.2
PepSY-associated TM helix domain-containing protein