Halomonas qaidamensis strain XH36 plasmid unnamed, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Halomonas.
Whole genome sequencing of the halophilic Halomonas qaidamensis XH36, a novel species strain with high ectoine production
Submitted (06-AUG-2021) Medical College, Qinghai University, 251 Ning Road, Xining, Qinghai 810016, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP080628.1.\nBacteria and source DNA available from Research Centre of Basic\nMedical Sciences, Medical College, Qinghai University.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. 0.4.7\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 508.0x\nSequencing Technology :: PacBio RSII; Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 11/01/2022 08:37:41\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 3,468\nCDSs (total) :: 3,385\nGenes (coding) :: 3,367\nCDSs (with protein) :: 3,367\nGenes (RNA) :: 83\nrRNAs :: 6, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 6, 6 (5S, 16S, 23S)\ntRNAs :: 61\nncRNAs :: 4\nPseudo Genes (total) :: 18\nCDSs (without protein) :: 18\nPseudo Genes (ambiguous residues) :: 0 of 18\nPseudo Genes (frameshifted) :: 2 of 18\nPseudo Genes (incomplete) :: 15 of 18\nPseudo Genes (internal stop) :: 3 of 18\nPseudo Genes (multiple problems) :: 2 of 18\nCRISPR Arrays :: 3\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_009724513.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012783.2
COORDINATES: similar to AA sequence:RefSeq:WP_019020580.1
GO:0044423 - virion component [Evidence IEA]
GO:0005198 - structural molecule activity [Evidence IEA]
GO:0019068 - virion assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009724518.1
COORDINATES: similar to AA sequence:RefSeq:WP_019020582.1
phage terminase large subunit family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014416520.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_009724526.1
COORDINATES: protein motif:HMM:NF012798.2
COORDINATES: similar to AA sequence:RefSeq:WP_012004125.1
COORDINATES: protein motif:HMM:NF012920.2
COORDINATES: similar to AA sequence:RefSeq:WP_008957320.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF020952.2
COORDINATES: similar to AA sequence:RefSeq:WP_005203846.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017684244.1
COORDINATES: similar to AA sequence:RefSeq:WP_019020823.1
COORDINATES: similar to AA sequence:RefSeq:WP_004285276.1
COORDINATES: protein motif:HMM:NF012307.2
reverse transcriptase/maturase family protein
COORDINATES: protein motif:HMM:NF017451.2
COORDINATES: similar to AA sequence:RefSeq:WP_020476698.1
COORDINATES: protein motif:HMM:NF025203.2
GO:0005509 - calcium ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF020388.2
COORDINATES: protein motif:HMM:NF018472.2
COORDINATES: similar to AA sequence:RefSeq:WP_009724512.1