Streptomyces akebiae strain MG28 plasmid unnamed2, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Kitasatosporales; Streptomycetaceae; Streptomyces.
Submitted (05-AUG-2021) College of Life and Environment Science, Hunan University of Arts and Science, No. 3150 Dongting Avenue, Changde, Hunan 415000, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP080648.1.\nBacteria and source DNA available from Mo Ping.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. v. 3\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 120.0x\nSequencing Technology :: Oxford Nanopore PromethION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/10/2022 10:17:59\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 9,138\nCDSs (total) :: 9,047\nGenes (coding) :: 8,701\nCDSs (with protein) :: 8,701\nGenes (RNA) :: 91\nrRNAs :: 6, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 6, 6 (5S, 16S, 23S)\ntRNAs :: 70\nncRNAs :: 3\nPseudo Genes (total) :: 346\nCDSs (without protein) :: 346\nPseudo Genes (ambiguous residues) :: 0 of 346\nPseudo Genes (frameshifted) :: 147 of 346\nPseudo Genes (incomplete) :: 271 of 346\nPseudo Genes (internal stop) :: 25 of 346\nPseudo Genes (multiple problems) :: 88 of 346\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_014677576.1
frameshifted; incomplete; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:TIGR02937.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004994192.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024793.2
COORDINATES: protein motif:HMM:NF020859.2
Mu transposase C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF012870.2
COORDINATES: similar to AA sequence:RefSeq:WP_076611992.1
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_016828422.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018559915.1
COORDINATES: similar to AA sequence:RefSeq:WP_005565159.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019327236.1
COORDINATES: similar to AA sequence:RefSeq:WP_007381703.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012382370.1
COORDINATES: similar to AA sequence:RefSeq:WP_003977840.1
COORDINATES: similar to AA sequence:RefSeq:WP_016828384.1
COORDINATES: similar to AA sequence:RefSeq:WP_018088551.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_020541117.1
COORDINATES: similar to AA sequence:RefSeq:WP_012890090.1
COORDINATES: similar to AA sequence:RefSeq:WP_008740965.1
COORDINATES: similar to AA sequence:RefSeq:WP_017948879.1
COORDINATES: similar to AA sequence:RefSeq:WP_018546833.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005477399.1
COORDINATES: similar to AA sequence:RefSeq:WP_004003254.1
COORDINATES: similar to AA sequence:RefSeq:WP_016884933.1
COORDINATES: similar to AA sequence:RefSeq:WP_018569296.1
COORDINATES: similar to AA sequence:RefSeq:WP_019979985.1
COORDINATES: similar to AA sequence:RefSeq:WP_018569294.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_018386857.1
COORDINATES: similar to AA sequence:RefSeq:WP_086558091.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_016436764.1
Clp protease N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018519027.1
COORDINATES: similar to AA sequence:RefSeq:WP_019074418.1
COORDINATES: similar to AA sequence:RefSeq:WP_020548019.1
COORDINATES: similar to AA sequence:RefSeq:WP_013587663.1
COORDINATES: similar to AA sequence:RefSeq:WP_007387459.1
COORDINATES: similar to AA sequence:RefSeq:WP_018569291.1
COORDINATES: similar to AA sequence:RefSeq:WP_014140738.1
COORDINATES: similar to AA sequence:RefSeq:WP_010636357.1
GO:0003896 - DNA primase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007268491.1
COORDINATES: similar to AA sequence:RefSeq:WP_019327731.1
COORDINATES: similar to AA sequence:RefSeq:WP_015449529.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_016828477.1
COORDINATES: similar to AA sequence:RefSeq:WP_008742102.1
COORDINATES: similar to AA sequence:RefSeq:WP_014158409.1
COORDINATES: similar to AA sequence:RefSeq:WP_014158408.1
COORDINATES: similar to AA sequence:RefSeq:WP_006608009.1
COORDINATES: similar to AA sequence:RefSeq:WP_019886501.1
COORDINATES: similar to AA sequence:RefSeq:WP_014676872.1
ScbR family autoregulator-binding transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_007387457.1
ScbA/BarX family gamma-butyrolactone biosynthesis protein
COORDINATES: similar to AA sequence:RefSeq:WP_018562056.1
COORDINATES: similar to AA sequence:RefSeq:WP_018531031.1
COORDINATES: similar to AA sequence:RefSeq:WP_018521705.1
COORDINATES: similar to AA sequence:RefSeq:WP_018106319.1
AfsR/SARP family transcriptional regulator
COORDINATES: protein motif:HMM:NF012759.2
COORDINATES: protein motif:HMM:NF012337.2
COORDINATES: similar to AA sequence:RefSeq:WP_018568309.1
GO:0008897 - holo-[acyl-carrier-protein] synthase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]
4'-phosphopantetheinyl transferase superfamily protein
COORDINATES: similar to AA sequence:RefSeq:WP_003978807.1
COORDINATES: similar to AA sequence:RefSeq:WP_018106303.1
COORDINATES: protein motif:HMM:NF012873.2
COORDINATES: similar to AA sequence:RefSeq:WP_004994442.1
COORDINATES: similar to AA sequence:RefSeq:WP_005458783.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006345863.1
COORDINATES: similar to AA sequence:RefSeq:WP_005473972.1
fic family toxin-antitoxin system, toxin component
COORDINATES: similar to AA sequence:RefSeq:WP_018542699.1
GO:0008460 - dTDP-glucose 4,6-dehydratase activity [Evidence IEA]
GO:0019305 - dTDP-rhamnose biosynthetic process [Evidence IEA]; GO:0009243 - O antigen biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010072403.1
GO:0008879 - glucose-1-phosphate thymidylyltransferase activity [Evidence IEA]
GO:0000271 - polysaccharide biosynthetic process [Evidence IEA]
glucose-1-phosphate thymidylyltransferase
COORDINATES: protein motif:HMM:NF012296.2
COORDINATES: protein motif:HMM:NF012901.2
COORDINATES: similar to AA sequence:RefSeq:WP_009324924.1
COORDINATES: protein motif:HMM:NF020243.2
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_012381767.1
COORDINATES: similar to AA sequence:RefSeq:WP_020546006.1
COORDINATES: similar to AA sequence:RefSeq:WP_010981856.1
COORDINATES: similar to AA sequence:RefSeq:WP_014057313.1
COORDINATES: similar to AA sequence:RefSeq:WP_008742168.1
COORDINATES: similar to AA sequence:RefSeq:WP_010981855.1
COORDINATES: similar to AA sequence:RefSeq:WP_014057311.1
COORDINATES: similar to AA sequence:RefSeq:WP_020515128.1
COORDINATES: similar to AA sequence:RefSeq:WP_018738305.1
COORDINATES: similar to AA sequence:RefSeq:WP_018511377.1
NAD-dependent epimerase/dehydratase family protein
COORDINATES: protein motif:HMM:TIGR04516.1
activator-dependent family glycosyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_018846535.1
COORDINATES: similar to AA sequence:RefSeq:WP_020634137.1
NDP-hexose 2,3-dehydratase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_003963467.1
DegT/DnrJ/EryC1/StrS family aminotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_014057091.1
COORDINATES: similar to AA sequence:RefSeq:WP_014173973.1
GO:0043880 - crotonyl-CoA reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015508323.1
COORDINATES: similar to AA sequence:RefSeq:WP_013285644.1
COORDINATES: similar to AA sequence:RefSeq:WP_005477235.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013873067.1
COORDINATES: similar to AA sequence:RefSeq:WP_086558065.1
COORDINATES: similar to AA sequence:RefSeq:WP_003963968.1
aminoglycoside phosphotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_020115041.1
COORDINATES: similar to AA sequence:RefSeq:WP_014060439.1
COORDINATES: similar to AA sequence:RefSeq:WP_020555661.1
COORDINATES: similar to AA sequence:RefSeq:WP_003962957.1
COORDINATES: similar to AA sequence:RefSeq:WP_014143370.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_020573498.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014677394.1
COORDINATES: similar to AA sequence:RefSeq:WP_003999362.1