Pseudemcibacter aquimaris strain Y4 chromosome, complete genome.
Bacteria; Pseudomonadota; Alphaproteobacteria; Emcibacterales; Emcibacteraceae; Pseudemcibacter.
Pseudoemcibacter aquimaris gen. nov., sp. nov., isolated from seawater in aquaculture farm
Submitted (13-JUL-2021) College of Ocean and Earth Sciences, xiamen university, Sha mei Road, XiaMen, FuJian 361101, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP079800.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\nThis genome has a base modification file available.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SOAPdenovo v. 2.04\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 100.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/27/2023 15:49:21\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,166\nCDSs (total) :: 3,119\nGenes (coding) :: 3,104\nCDSs (with protein) :: 3,104\nGenes (RNA) :: 47\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 38\nncRNAs :: 3\nPseudo Genes (total) :: 15\nCDSs (without protein) :: 15\nPseudo Genes (ambiguous residues) :: 0 of 15\nPseudo Genes (frameshifted) :: 1 of 15\nPseudo Genes (incomplete) :: 12 of 15\nPseudo Genes (internal stop) :: 3 of 15\nPseudo Genes (multiple problems) :: 1 of 15\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Pseudemcibacter aquimaris
COORDINATES: protein motif:HMM:TIGR00362.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003688 - DNA replication origin binding [Evidence IEA]
GO:0006270 - DNA replication initiation [Evidence IEA]; GO:0006275 - regulation of DNA replication [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
chromosomal replication initiator protein DnaA
COORDINATES: similar to AA sequence:RefSeq:WP_020044274.1
GO:0009360 - DNA polymerase III complex [Evidence IEA]
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: protein motif:HMM:NF000820.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0003697 - single-stranded DNA binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF011501.0
GO:0009330 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) complex [Evidence IEA]
GO:0003918 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity [Evidence IEA]
GO:0006265 - DNA topological change [Evidence IEA]
DNA topoisomerase (ATP-hydrolyzing) subunit B
COORDINATES: protein motif:HMM:NF013098.2
COORDINATES: protein motif:HMM:TIGR02074.1
GO:0008658 - penicillin binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF013980.2
SprT family zinc-dependent metalloprotease
COORDINATES: similar to AA sequence:RefSeq:WP_006471653.1
COORDINATES: protein motif:HMM:NF014667.2
COORDINATES: protein motif:HMM:NF024206.2
ankyrin repeat domain-containing protein
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF017815.2
transglutaminase-like cysteine peptidase
COORDINATES: protein motif:HMM:NF017935.2
COORDINATES: protein motif:HMM:NF015411.2
COORDINATES: protein motif:HMM:NF017015.2
COORDINATES: protein motif:HMM:NF012382.2
PLP-dependent aminotransferase family protein
COORDINATES: protein motif:HMM:NF016028.2
COORDINATES: protein motif:HMM:TIGR01317.1
COORDINATES: protein motif:HMM:NF008730.0
GO:0003824 - catalytic activity [Evidence IEA]; GO:0015930 - glutamate synthase activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
GO:0006537 - glutamate biosynthetic process [Evidence IEA]; GO:0006807 - nitrogen compound metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01970.1
GO:0004386 - helicase activity [Evidence IEA]
GO:0006139 - nucleobase-containing compound metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF006577.0
GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IEA]
ribonucleoside-diphosphate reductase subunit alpha
COORDINATES: protein motif:HMM:NF007186.0
GO:0016491 - oxidoreductase activity [Evidence IEA]
GO:0009263 - deoxyribonucleotide biosynthetic process [Evidence IEA]
ribonucleotide-diphosphate reductase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_008036689.1
GO:0033743 - peptide-methionine (R)-S-oxide reductase activity [Evidence IEA]
GO:0030091 - protein repair [Evidence IEA]; GO:0006979 - response to oxidative stress [Evidence IEA]
peptide-methionine (R)-S-oxide reductase MsrB
COORDINATES: protein motif:HMM:NF012472.2
COORDINATES: protein motif:HMM:TIGR00401.1
GO:0033744 - L-methionine:thioredoxin-disulfide S-oxidoreductase activity [Evidence IEA]; GO:0008113 - peptide-methionine (S)-S-oxide reductase activity [Evidence IEA]
peptide-methionine (S)-S-oxide reductase MsrA
COORDINATES: similar to AA sequence:RefSeq:WP_013343673.1
GO:0008743 - L-threonine 3-dehydrogenase activity [Evidence IEA]
GO:0006567 - threonine catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF005394.0
GO:0008890 - glycine C-acetyltransferase activity [Evidence IEA]; GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF019498.2
COORDINATES: protein motif:HMM:NF013702.2
lysophospholipid acyltransferase family protein
COORDINATES: protein motif:HMM:TIGR00797.1
GO:0042910 - xenobiotic transmembrane transporter activity [Evidence IEA]
GO:0009410 - response to xenobiotic stimulus [Evidence IEA]; GO:0006855 - xenobiotic transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF010783.0
GO:0004488 - methylenetetrahydrofolate dehydrogenase (NADP+) activity [Evidence IEA]
bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD
COORDINATES: protein motif:HMM:NF014389.2
COORDINATES: protein motif:HMM:NF004397.1
GO:0008408 - 3'-5' exonuclease activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
GO:0006261 - DNA-templated DNA replication [Evidence IEA]
COORDINATES: protein motif:HMM:NF012235.2
COORDINATES: protein motif:HMM:NF006567.0
GO:0008734 - L-aspartate oxidase activity [Evidence IEA]
GO:0009435 - NAD biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF022437.2
COORDINATES: protein motif:HMM:NF024809.2
GO:0005515 - protein binding [Evidence IEA]
GO:0006749 - glutathione metabolic process [Evidence IEA]
glutathione S-transferase N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF003555.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0051082 - unfolded protein binding [Evidence IEA]
GO:0006457 - protein folding [Evidence IEA]
COORDINATES: protein motif:HMM:NF006757.0
GO:0003994 - aconitate hydratase activity [Evidence IEA]
GO:0006099 - tricarboxylic acid cycle [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01189.1
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]
GO:0015439 - ABC-type heme transporter activity [Evidence IEA]
GO:0015886 - heme transport [Evidence IEA]
heme ABC exporter ATP-binding protein CcmA
COORDINATES: protein motif:HMM:NF015344.2
GO:0015232 - heme transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024859.2
COORDINATES: protein motif:HMM:NF016207.2
FMN-binding negative transcriptional regulator
COORDINATES: protein motif:HMM:NF021193.2
COORDINATES: similar to AA sequence:RefSeq:WP_003079809.1
COORDINATES: protein motif:HMM:TIGR03141.1
GO:0017004 - cytochrome complex assembly [Evidence IEA]; GO:0015886 - heme transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF009731.0
GO:0020037 - heme binding [Evidence IEA]
GO:0017004 - cytochrome complex assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008282980.1
COORDINATES: protein motif:HMM:TIGR00385.1
DsbE family thiol:disulfide interchange protein
COORDINATES: protein motif:HMM:NF015853.2
cytochrome c-type biogenesis protein CcmH
COORDINATES: protein motif:HMM:TIGR03142.1
GO:0051082 - unfolded protein binding [Evidence IEA]
c-type cytochrome biogenesis protein CcmI
COORDINATES: protein motif:HMM:NF016189.2
COORDINATES: protein motif:HMM:TIGR00064.1
GO:0003924 - GTPase activity [Evidence IEA]; GO:0005047 - signal recognition particle binding [Evidence IEA]
GO:0009306 - protein secretion [Evidence IEA]
signal recognition particle-docking protein FtsY
COORDINATES: protein motif:HMM:TIGR00089.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
GO:0006400 - tRNA modification [Evidence IEA]
tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB
COORDINATES: protein motif:HMM:NF013132.2
GO:0005886 - plasma membrane [Evidence IEA]
GO:0008509 - monoatomic anion transmembrane transporter activity [Evidence IEA]
GO:0006820 - monoatomic anion transport [Evidence IEA]
DASS family sodium-coupled anion symporter
COORDINATES: protein motif:HMM:NF024895.2
COORDINATES: similar to AA sequence:RefSeq:WP_016290939.1
GO:0048501 - signal recognition particle, plasma membrane targeting [Evidence IEA]
GO:0003924 - GTPase activity [Evidence IEA]; GO:0005048 - signal sequence binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005606737.1
GO:0022627 - cytosolic small ribosomal subunit [Evidence IEA]; GO:0000314 - organellar small ribosomal subunit [Evidence IEA]
GO:0003735 - structural constituent of ribosome [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:TIGR02273.1
GO:0006364 - rRNA processing [Evidence IEA]
Essential for efficient processing of 16S rRNA; Essential for efficient processing of 16S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:TIGR00088.1
GO:0052906 - tRNA (guanine(37)-N(1))-methyltransferase activity [Evidence IEA]
GO:0008033 - tRNA processing [Evidence IEA]
tRNA (guanosine(37)-N1)-methyltransferase TrmD
COORDINATES: similar to AA sequence:RefSeq:WP_005018193.1
GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]; GO:0000311 - plastid large ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008035642.1
GO:0009316 - 3-isopropylmalate dehydratase complex [Evidence IEA]
GO:0003861 - 3-isopropylmalate dehydratase activity [Evidence IEA]
GO:0009098 - leucine biosynthetic process [Evidence IEA]
3-isopropylmalate dehydratase large subunit
COORDINATES: similar to AA sequence:RefSeq:WP_008035643.1
3-isopropylmalate dehydratase small subunit
COORDINATES: protein motif:HMM:TIGR00169.1
GO:0003862 - 3-isopropylmalate dehydrogenase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020043897.1
GO:0004073 - aspartate-semialdehyde dehydrogenase activity [Evidence IEA]; GO:0051287 - NAD binding [Evidence IEA]; GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]
GO:0008652 - amino acid biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006388009.1
COORDINATES: protein motif:HMM:NF004616.0
succinate dehydrogenase iron-sulfur subunit
COORDINATES: similar to AA sequence:RefSeq:WP_009241008.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
GO:0022900 - electron transport chain [Evidence IEA]; GO:0006099 - tricarboxylic acid cycle [Evidence IEA]
succinate dehydrogenase flavoprotein subunit
COORDINATES: protein motif:HMM:NF013307.2
GO:0045282 - plasma membrane succinate dehydrogenase complex [Evidence IEA]
GO:0000104 - succinate dehydrogenase activity [Evidence IEA]
succinate dehydrogenase, hydrophobic membrane anchor protein
COORDINATES: protein motif:HMM:TIGR02970.1
succinate dehydrogenase, cytochrome b556 subunit
COORDINATES: protein motif:HMM:NF014896.2
COORDINATES: protein motif:HMM:NF016289.2
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00369.1
COORDINATES: similar to AA sequence:RefSeq:WP_020045218.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
YggS family pyridoxal phosphate-dependent enzyme
COORDINATES: protein motif:HMM:NF014622.2
COORDINATES: protein motif:HMM:NF024996.2
GO:0015288 - porin activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF023522.2
COORDINATES: protein motif:HMM:TIGR00396.1
GO:0004823 - leucine-tRNA ligase activity [Evidence IEA]
GO:0006429 - leucyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF016290.2
GO:0019867 - outer membrane [Evidence IEA]
GO:0043165 - Gram-negative-bacterium-type cell outer membrane assembly [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01128.1
COORDINATES: protein motif:HMM:NF014758.2
COORDINATES: similar to AA sequence:RefSeq:WP_012977422.1
COORDINATES: protein motif:HMM:NF037979.1
COORDINATES: protein motif:HMM:NF013434.2
COORDINATES: similar to AA sequence:RefSeq:WP_004151697.1
GO:0050480 - imidazolonepropionase activity [Evidence IEA]
GO:0006548 - histidine catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02022.1
GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02018.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: protein motif:HMM:NF003820.0
GO:0016153 - urocanate hydratase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF006871.0
GO:0004397 - histidine ammonia-lyase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017407631.1
GO:0050129 - N-formylglutamate deformylase activity [Evidence IEA]
GO:0019557 - histidine catabolic process to glutamate and formate [Evidence IEA]
COORDINATES: protein motif:HMM:NF017078.2
COORDINATES: protein motif:HMM:NF013224.2
Lrp/AsnC ligand binding domain-containing protein
COORDINATES: protein motif:HMM:TIGR00538.1
GO:0051989 - coproporphyrinogen dehydrogenase activity [Evidence IEA]
GO:0006779 - porphyrin-containing compound biosynthetic process [Evidence IEA]
oxygen-independent coproporphyrinogen III oxidase
COORDINATES: protein motif:HMM:NF024212.2
MarR family winged helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF013706.2
fumarylacetoacetate hydrolase family protein
COORDINATES: protein motif:HMM:NF025854.2
GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: protein motif:HMM:NF012301.2
LytTR family DNA-binding domain-containing protein
COORDINATES: protein motif:HMM:NF013923.2
COORDINATES: protein motif:HMM:NF012471.2
COORDINATES: protein motif:HMM:TIGR00924.1
COORDINATES: protein motif:HMM:NF013077.2
COORDINATES: protein motif:HMM:TIGR01782.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014396.2
GO:0016158 - 3-phytase activity [Evidence IEA]
ATP-binding cassette domain-containing protein
COORDINATES: protein motif:HMM:NF003767.0
GO:0043546 - molybdopterin cofactor binding [Evidence IEA]; GO:0016667 - oxidoreductase activity, acting on a sulfur group of donors [Evidence IEA]
GO:0030091 - protein repair [Evidence IEA]
protein-methionine-sulfoxide reductase catalytic subunit MsrP
COORDINATES: protein motif:HMM:NF013918.2
protein-methionine-sulfoxide reductase heme-binding subunit MsrQ
COORDINATES: protein motif:HMM:TIGR00149.1
GO:0003824 - catalytic activity [Evidence IEA]
GO:0008150 - biological_process [Evidence IEA]
secondary thiamine-phosphate synthase enzyme YjbQ
COORDINATES: protein motif:HMM:NF012488.2
aminotransferase class V-fold PLP-dependent enzyme
COORDINATES: protein motif:HMM:NF016241.2
COORDINATES: protein motif:HMM:NF016176.2
COORDINATES: protein motif:HMM:NF012656.2
acyl-CoA dehydrogenase C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF014035.2
sulfite exporter TauE/SafE family protein
COORDINATES: protein motif:HMM:NF021148.2
COORDINATES: protein motif:HMM:NF012766.2
COORDINATES: protein motif:HMM:NF004127.0
enoyl-CoA hydratase/isomerase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012904449.1
GO:0009982 - pseudouridine synthase activity [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
GO:0001522 - pseudouridine synthesis [Evidence IEA]; GO:0009451 - RNA modification [Evidence IEA]
COORDINATES: protein motif:HMM:NF024910.2
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF014344.2
COORDINATES: protein motif:HMM:TIGR01845.1
COORDINATES: protein motif:HMM:TIGR01730.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: protein motif:HMM:NF013069.2
COORDINATES: similar to AA sequence:RefSeq:WP_006312579.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
2Fe-2S iron-sulfur cluster-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011743077.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0003941 - L-serine ammonia-lyase activity [Evidence IEA]
GO:0009063 - amino acid catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF008869.0
GO:0003842 - 1-pyrroline-5-carboxylate dehydrogenase activity [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]; GO:0004657 - proline dehydrogenase activity [Evidence IEA]
GO:0010133 - proline catabolic process to glutamate [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA
COORDINATES: protein motif:HMM:NF012801.2
COORDINATES: protein motif:HMM:NF012888.2
tetratricopeptide repeat-containing sulfotransferase family protein
COORDINATES: protein motif:HMM:NF013155.2
COORDINATES: protein motif:HMM:NF012738.2
COORDINATES: protein motif:HMM:NF024808.2
sugar ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF012383.2
GO:0009116 - nucleoside metabolic process [Evidence IEA]
phosphoribosyltransferase family protein
COORDINATES: protein motif:HMM:NF020496.2
COORDINATES: protein motif:HMM:NF012521.2
COORDINATES: protein motif:HMM:NF013237.2
PLP-dependent aspartate aminotransferase family protein
COORDINATES: protein motif:HMM:NF002963.0
COORDINATES: protein motif:HMM:NF013232.2
MTAP family purine nucleoside phosphorylase
COORDINATES: protein motif:HMM:NF013197.2
rhodanese-like domain-containing protein
COORDINATES: protein motif:HMM:NF013228.2
COORDINATES: protein motif:HMM:NF024834.2
COORDINATES: protein motif:HMM:NF013739.2
COORDINATES: protein motif:HMM:TIGR02666.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]
GO:0006777 - Mo-molybdopterin cofactor biosynthetic process [Evidence IEA]
COORDINATES: nucleotide motif:Rfam:14.4:RF01055
molybdenum cofactor riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: protein motif:HMM:TIGR00615.1
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020055954.1
YbaB/EbfC family nucleoid-associated protein
COORDINATES: protein motif:HMM:NF006585.0
signal recognition particle sRNA small type
COORDINATES: nucleotide motif:Rfam:14.4:RF00169
Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: protein motif:HMM:NF001299.0
GO:0016787 - hydrolase activity [Evidence IEA]; GO:0000210 - NAD+ diphosphatase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF008866.0
GO:0004664 - prephenate dehydratase activity [Evidence IEA]
GO:0009094 - L-phenylalanine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012264.2
COORDINATES: protein motif:HMM:NF013073.2
COORDINATES: protein motif:HMM:NF024854.2
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF013079.2
glutathione S-transferase family protein
COORDINATES: protein motif:HMM:TIGR01891.1
GO:0004180 - carboxypeptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF026255.2
COORDINATES: protein motif:HMM:NF012602.2
molybdopterin oxidoreductase family protein
COORDINATES: protein motif:HMM:NF024644.2
4Fe-4S dicluster domain-containing protein
COORDINATES: protein motif:HMM:NF016838.2
GO:0019645 - anaerobic electron transport chain [Evidence IEA]
DmsC/YnfH family molybdoenzyme membrane anchor subunit
COORDINATES: protein motif:HMM:NF019335.2
TonB-dependent receptor plug domain-containing protein
COORDINATES: protein motif:HMM:TIGR00636.1
GO:0008817 - corrinoid adenosyltransferase activity [Evidence IEA]
GO:0009236 - cobalamin biosynthetic process [Evidence IEA]
cob(I)yrinic acid a,c-diamide adenosyltransferase
COORDINATES: protein motif:HMM:NF016473.2
COORDINATES: protein motif:HMM:NF016115.2
COORDINATES: protein motif:HMM:NF013570.2
COORDINATES: protein motif:HMM:NF024865.2
nuclear transport factor 2 family protein
COORDINATES: protein motif:HMM:NF012951.2
GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]
COORDINATES: protein motif:HMM:NF014305.2
COORDINATES: protein motif:HMM:NF015207.2
demethoxyubiquinone hydroxylase family protein
COORDINATES: protein motif:HMM:NF014639.2
COORDINATES: protein motif:HMM:NF020893.2
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: protein motif:HMM:NF007623.0
GO:0004622 - lysophospholipase activity [Evidence IEA]
GO:0006629 - lipid metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012904.2
dihydrodipicolinate synthase family protein
COORDINATES: protein motif:HMM:NF019310.2
COORDINATES: protein motif:HMM:NF013044.2
aromatic ring-hydroxylating dioxygenase subunit alpha
COORDINATES: protein motif:HMM:TIGR01722.1
CoA-acylating methylmalonate-semialdehyde dehydrogenase
COORDINATES: protein motif:HMM:NF012428.2
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO:0008483 - transaminase activity [Evidence IEA]
aminotransferase class III-fold pyridoxal phosphate-dependent enzyme
COORDINATES: protein motif:HMM:NF019013.2
COORDINATES: protein motif:HMM:NF012686.2
COORDINATES: protein motif:HMM:NF024842.2
COORDINATES: protein motif:HMM:NF019349.2
COORDINATES: protein motif:HMM:NF012345.2
Members of this family of hydrolases with an active site Cys residue belong to MEROPS family C26; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012348.2
COORDINATES: protein motif:HMM:NF012398.2
COORDINATES: protein motif:HMM:NF005682.0
aspartate aminotransferase family protein
COORDINATES: protein motif:HMM:NF017690.2
COORDINATES: protein motif:HMM:NF013720.2
COORDINATES: protein motif:HMM:NF025605.2
TetR/AcrR family transcriptional regulator
COORDINATES: protein motif:HMM:NF021538.2
COORDINATES: protein motif:HMM:NF025135.2
COORDINATES: protein motif:HMM:NF015400.2
saccharopine dehydrogenase NADP-binding domain-containing protein
COORDINATES: protein motif:HMM:NF015863.2
PepSY-associated TM helix domain-containing protein
COORDINATES: protein motif:HMM:NF016777.2
COORDINATES: protein motif:HMM:NF024579.2
COORDINATES: protein motif:HMM:NF001208.0
GO:0003987 - acetate-CoA ligase activity [Evidence IEA]
GO:0019427 - acetyl-CoA biosynthetic process from acetate [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03197.1
GO:0016645 - oxidoreductase activity, acting on the CH-NH group of donors [Evidence IEA]
FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC
COORDINATES: protein motif:HMM:NF012772.2
COORDINATES: protein motif:HMM:NF024257.2
substrate-binding domain-containing protein
COORDINATES: protein motif:HMM:NF013379.2
COORDINATES: protein motif:HMM:NF014688.2
COORDINATES: similar to AA sequence:RefSeq:WP_019337360.1
COORDINATES: similar to AA sequence:RefSeq:WP_005410261.1
COORDINATES: protein motif:HMM:NF024583.2
COORDINATES: protein motif:HMM:NF019581.2
COORDINATES: protein motif:HMM:NF018649.2
isoprenylcysteine carboxylmethyltransferase family protein
COORDINATES: protein motif:HMM:NF019846.2
GO:0008168 - methyltransferase activity [Evidence IEA]
methyltransferase domain-containing protein
COORDINATES: protein motif:HMM:NF008775.0
GO:0045900 - negative regulation of translational elongation [Evidence IEA]
energy-dependent translational throttle protein EttA
COORDINATES: protein motif:HMM:NF016236.2
COORDINATES: protein motif:HMM:NF024764.2
COORDINATES: protein motif:HMM:NF013382.2
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: protein motif:HMM:NF006950.0
GO:0004489 - methylenetetrahydrofolate reductase (NAD(P)H) activity [Evidence IEA]
GO:0009086 - methionine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF014615.2
homocysteine S-methyltransferase family protein
COORDINATES: protein motif:HMM:NF007024.0
GO:0008705 - methionine synthase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF006944.0
GO:0046872 - metal ion binding [Evidence IEA]; GO:0004494 - methylmalonyl-CoA mutase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012161.0
GO:0008800 - beta-lactamase activity [Evidence IEA]
GO:0030655 - beta-lactam antibiotic catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF039408.1
COORDINATES: protein motif:HMM:NF022077.2
COORDINATES: protein motif:HMM:TIGR01933.1
GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0003674 - molecular_function [Evidence IEA]
GO:0045861 - negative regulation of proteolysis [Evidence IEA]
COORDINATES: protein motif:HMM:NF013324.2
COORDINATES: protein motif:HMM:NF021366.2
COORDINATES: protein motif:HMM:TIGR02037.1
GO:0005515 - protein binding [Evidence IEA]; GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
GO:0006508 - proteolysis [Evidence IEA]; GO:0006950 - response to stress [Evidence IEA]
transferrin receptor-like dimerization domain-containing protein
COORDINATES: protein motif:HMM:NF014567.2
COORDINATES: similar to AA sequence:RefSeq:WP_018065801.1
COORDINATES: protein motif:HMM:NF012655.2
COORDINATES: protein motif:HMM:NF037167.2
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012389.2
COORDINATES: similar to AA sequence:RefSeq:WP_016365427.1
GO:0006094 - gluconeogenesis [Evidence IEA]; GO:0019682 - glyceraldehyde-3-phosphate metabolic process [Evidence IEA]; GO:0006096 - glycolytic process [Evidence IEA]
type I glyceraldehyde-3-phosphate dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_005123317.1
GO:0004802 - transketolase activity [Evidence IEA]
GO:0006098 - pentose-phosphate shunt [Evidence IEA]
COORDINATES: protein motif:HMM:NF017016.2
COORDINATES: protein motif:HMM:TIGR02727.1
GO:0030272 - 5-formyltetrahydrofolate cyclo-ligase activity [Evidence IEA]
GO:0006730 - one-carbon metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00282.1
GO:0042578 - phosphoric ester hydrolase activity [Evidence IEA]
GO:0008152 - metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF001030.0
YebC/PmpR family DNA-binding transcriptional regulator
COORDINATES: protein motif:HMM:TIGR00228.1
GO:0008821 - crossover junction endodeoxyribonuclease activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
crossover junction endodeoxyribonuclease RuvC
COORDINATES: protein motif:HMM:NF001040.0
GO:0009379 - Holliday junction helicase complex [Evidence IEA]
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0009378 - four-way junction helicase activity [Evidence IEA]
Holliday junction branch migration protein RuvA
COORDINATES: similar to AA sequence:RefSeq:WP_008034894.1
Holliday junction branch migration DNA helicase RuvB
COORDINATES: protein motif:HMM:TIGR02799.1
GO:0047617 - acyl-CoA hydrolase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
tol-pal system-associated acyl-CoA thioesterase
COORDINATES: similar to AA sequence:RefSeq:WP_008034890.1
GO:0015078 - proton transmembrane transporter activity [Evidence IEA]
GO:1902600 - proton transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020044576.1
GO:0098567 - periplasmic side of plasma membrane [Evidence IEA]
GO:0061024 - membrane organization [Evidence IEA]; GO:1902600 - proton transmembrane transport [Evidence IEA]
TonB C-terminal domain-containing protein
COORDINATES: protein motif:HMM:TIGR02800.1
Tol-Pal system beta propeller repeat protein TolB
COORDINATES: protein motif:HMM:NF012894.2
COORDINATES: protein motif:HMM:TIGR02795.1
COORDINATES: protein motif:HMM:TIGR02432.1
GO:0016879 - ligase activity, forming carbon-nitrogen bonds [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01241.2
GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0004222 - metalloendopeptidase activity [Evidence IEA]
GO:0051301 - cell division [Evidence IEA]; GO:0006508 - proteolysis [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01496.1
GO:0004156 - dihydropteroate synthase activity [Evidence IEA]
GO:0009396 - folic acid-containing compound biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF008139.0
GO:0008966 - phosphoglucosamine mutase activity [Evidence IEA]
GO:0009103 - lipopolysaccharide biosynthetic process [Evidence IEA]; GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00097.1
GO:0008902 - hydroxymethylpyrimidine kinase activity [Evidence IEA]; GO:0008972 - phosphomethylpyrimidine kinase activity [Evidence IEA]
GO:0009228 - thiamine biosynthetic process [Evidence IEA]
bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase
COORDINATES: protein motif:HMM:NF013592.2
COORDINATES: protein motif:HMM:NF002841.0
GO:0004648 - O-phospho-L-serine:2-oxoglutarate aminotransferase activity [Evidence IEA]
GO:0006564 - L-serine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01327.1
GO:0004617 - phosphoglycerate dehydrogenase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024785.2
ATP phosphoribosyltransferase regulatory subunit
COORDINATES: similar to AA sequence:RefSeq:WP_003690856.1
GO:0004019 - adenylosuccinate synthase activity [Evidence IEA]; GO:0005525 - GTP binding [Evidence IEA]
GO:0006164 - purine nucleotide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012284737.1
GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017978209.1
GO:0009982 - pseudouridine synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF023056.2
COORDINATES: protein motif:HMM:NF013933.2
GO:0006865 - amino acid transport [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01331.1
GO:0008441 - 3'(2'),5'-bisphosphate nucleotidase activity [Evidence IEA]
GO:0006790 - sulfur compound metabolic process [Evidence IEA]
3'(2'),5'-bisphosphate nucleotidase CysQ
COORDINATES: protein motif:HMM:NF021595.2
histidine phosphotransferase family protein
GO:0006935 - chemotaxis [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: protein motif:HMM:NF013731.2
COORDINATES: similar to AA sequence:RefSeq:WP_017978214.1
COORDINATES: protein motif:HMM:NF001965.0
chemotaxis response regulator protein-glutamate methylesterase
COORDINATES: protein motif:HMM:NF013867.2
COORDINATES: protein motif:HMM:NF012236.2
COORDINATES: protein motif:HMM:NF037775.2
COORDINATES: protein motif:HMM:NF014144.2
GO:0009288 - bacterial-type flagellum [Evidence IEA]
GO:0071973 - bacterial-type flagellum-dependent cell motility [Evidence IEA]
COORDINATES: protein motif:HMM:NF012662.2
COORDINATES: protein motif:HMM:NF012973.2
COORDINATES: protein motif:HMM:TIGR03506.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
flagellar hook-basal body complex protein
COORDINATES: protein motif:HMM:NF012674.2
COORDINATES: protein motif:HMM:NF015896.2
COORDINATES: protein motif:HMM:NF014207.2
flagellar hook-length control protein FliK
COORDINATES: protein motif:HMM:TIGR02492.1
GO:0009424 - bacterial-type flagellum hook [Evidence IEA]
GO:0005198 - structural molecule activity [Evidence IEA]
GO:0001539 - cilium or flagellum-dependent cell motility [Evidence IEA]
COORDINATES: protein motif:HMM:NF012903.2
COORDINATES: protein motif:HMM:TIGR00420.1
GO:0016783 - sulfurtransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012546.2
COORDINATES: protein motif:HMM:NF024792.2
pilus assembly protein TadG-related protein
COORDINATES: protein motif:HMM:NF019428.2
COORDINATES: protein motif:HMM:NF013088.2
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR04555.1
GO:0030151 - molybdenum ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013214.2
COORDINATES: protein motif:HMM:NF013607.2
low molecular weight protein-tyrosine-phosphatase
COORDINATES: similar to AA sequence:RefSeq:WP_007803189.1
COORDINATES: similar to AA sequence:RefSeq:WP_003170126.1
COORDINATES: protein motif:HMM:NF018482.2
invasion associated locus B family protein
COORDINATES: protein motif:HMM:TIGR00048.1
GO:0016433 - rRNA (adenine) methyltransferase activity [Evidence IEA]; GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IEA]
GO:0031167 - rRNA methylation [Evidence IEA]
23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN
COORDINATES: protein motif:HMM:TIGR00738.1
COORDINATES: similar to AA sequence:RefSeq:WP_008036166.1
COORDINATES: protein motif:HMM:NF014376.2
COORDINATES: protein motif:HMM:NF012503.2
COORDINATES: protein motif:HMM:NF014698.2
COORDINATES: protein motif:HMM:TIGR00710.1
COORDINATES: similar to AA sequence:RefSeq:WP_003149790.1
COORDINATES: similar to AA sequence:RefSeq:WP_016448039.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]
ATP-dependent protease ATPase subunit HslU
COORDINATES: similar to AA sequence:RefSeq:WP_020054880.1
GO:0004298 - threonine-type endopeptidase activity [Evidence IEA]
GO:0051603 - proteolysis involved in protein catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018054362.1
GO:0004424 - imidazoleglycerol-phosphate dehydratase activity [Evidence IEA]
GO:0000105 - histidine biosynthetic process [Evidence IEA]
imidazoleglycerol-phosphate dehydratase HisB
COORDINATES: protein motif:HMM:TIGR01855.1
GO:0016884 - carbon-nitrogen ligase activity, with glutamine as amido-N-donor [Evidence IEA]; GO:0000107 - imidazoleglycerol-phosphate synthase activity [Evidence IEA]
imidazole glycerol phosphate synthase subunit HisH
COORDINATES: protein motif:HMM:NF012792.2
COORDINATES: protein motif:HMM:NF010112.0
GO:0003949 - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase activity [Evidence IEA]
1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase
COORDINATES: similar to AA sequence:RefSeq:WP_020044149.1
GO:0000107 - imidazoleglycerol-phosphate synthase activity [Evidence IEA]
imidazole glycerol phosphate synthase subunit HisF
COORDINATES: similar to AA sequence:RefSeq:WP_006890815.1
GO:0004636 - phosphoribosyl-ATP diphosphatase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020044600.1
histidine triad nucleotide-binding protein
COORDINATES: protein motif:HMM:NF012515.2
COORDINATES: protein motif:HMM:NF018917.2
COORDINATES: similar to AA sequence:RefSeq:WP_007116325.1
GO:0003906 - DNA-(apurinic or apyrimidinic site) endonuclease activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF021517.2
COORDINATES: protein motif:HMM:TIGR00847.1
GO:0008535 - respiratory chain complex IV assembly [Evidence IEA]
cbb3-type cytochrome oxidase assembly protein CcoS
COORDINATES: protein motif:HMM:TIGR01511.1
COORDINATES: protein motif:HMM:NF017559.2
COORDINATES: protein motif:HMM:TIGR02745.1
cytochrome c oxidase accessory protein CcoG
COORDINATES: protein motif:HMM:TIGR00782.1
GO:0004129 - cytochrome-c oxidase activity [Evidence IEA]
cytochrome-c oxidase, cbb3-type subunit III
COORDINATES: protein motif:HMM:NF017366.2
cbb3-type cytochrome c oxidase subunit 3
COORDINATES: protein motif:HMM:NF011055.0
cytochrome-c oxidase, cbb3-type subunit II
COORDINATES: protein motif:HMM:TIGR00780.1
cytochrome-c oxidase, cbb3-type subunit I
COORDINATES: protein motif:HMM:NF023358.2
COORDINATES: protein motif:HMM:NF013760.2
MotA/TolQ/ExbB proton channel family protein
COORDINATES: protein motif:HMM:NF014525.2
COORDINATES: protein motif:HMM:NF015506.2
COORDINATES: protein motif:HMM:NF016247.2
GO:0050920 - regulation of chemotaxis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012510960.1
COORDINATES: protein motif:HMM:NF004160.0
GO:0003919 - FMN adenylyltransferase activity [Evidence IEA]
bifunctional riboflavin kinase/FAD synthetase
COORDINATES: protein motif:HMM:TIGR00392.1
GO:0004822 - isoleucine-tRNA ligase activity [Evidence IEA]
GO:0006428 - isoleucyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00077.1
GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA]
GO:0009306 - protein secretion [Evidence IEA]; GO:0006508 - proteolysis [Evidence IEA]
COORDINATES: protein motif:HMM:NF022679.2
COORDINATES: protein motif:HMM:NF000953.0
GO:0032300 - mismatch repair complex [Evidence IEA]
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0030983 - mismatched DNA binding [Evidence IEA]
GO:0006298 - mismatch repair [Evidence IEA]
COORDINATES: protein motif:HMM:NF015559.2
GO:0052913 - 16S rRNA (guanine(966)-N(2))-methyltransferase activity [Evidence IEA]
16S rRNA (guanine(966)-N(2))-methyltransferase RsmD
COORDINATES: protein motif:HMM:TIGR00093.1
COORDINATES: similar to AA sequence:RefSeq:WP_015588394.1
COORDINATES: protein motif:HMM:NF013117.2
COORDINATES: protein motif:HMM:NF014719.2
GO:0015114 - phosphate ion transmembrane transporter activity [Evidence IEA]; GO:0005436 - sodium:phosphate symporter activity [Evidence IEA]
GO:0035435 - phosphate ion transmembrane transport [Evidence IEA]; GO:0044341 - sodium-dependent phosphate transport [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00877.1
GO:0004637 - phosphoribosylamine-glycine ligase activity [Evidence IEA]
GO:0006189 - 'de novo' IMP biosynthetic process [Evidence IEA]; GO:0009152 - purine ribonucleotide biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00237.1
GO:0009318 - exodeoxyribonuclease VII complex [Evidence IEA]
GO:0008855 - exodeoxyribonuclease VII activity [Evidence IEA]
GO:0006308 - DNA catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013700.2
COORDINATES: protein motif:HMM:TIGR02001.1
COORDINATES: protein motif:HMM:NF024110.2
COORDINATES: protein motif:HMM:NF012596.2
COORDINATES: protein motif:HMM:NF039907.1
COORDINATES: similar to AA sequence:RefSeq:WP_004886738.1
GO:0016831 - carboxy-lyase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001739810.1
GO:0004427 - inorganic diphosphate phosphatase activity [Evidence IEA]
GO:0006796 - phosphate-containing compound metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF001960.0
COORDINATES: protein motif:HMM:TIGR01474.1
GO:0008412 - 4-hydroxybenzoate octaprenyltransferase activity [Evidence IEA]
GO:0006744 - ubiquinone biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00046.1
16S rRNA (uracil(1498)-N(3))-methyltransferase
COORDINATES: protein motif:HMM:TIGR02281.1
TIGR02281 family clan AA aspartic protease
COORDINATES: protein motif:HMM:TIGR01436.1
GO:0004357 - glutamate-cysteine ligase activity [Evidence IEA]
GO:0006750 - glutathione biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF037144.2
COORDINATES: protein motif:HMM:NF012371.2
serine hydrolase domain-containing protein
COORDINATES: protein motif:HMM:NF017771.2
COORDINATES: protein motif:HMM:NF003346.0
GO:0004375 - glycine dehydrogenase (decarboxylating) activity [Evidence IEA]
GO:0006546 - glycine catabolic process [Evidence IEA]
aminomethyl-transferring glycine dehydrogenase subunit GcvPB
COORDINATES: protein motif:HMM:NF001696.0
aminomethyl-transferring glycine dehydrogenase subunit GcvPA
COORDINATES: similar to AA sequence:RefSeq:WP_005123344.1
GO:0019464 - glycine decarboxylation via glycine cleavage system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020045075.1
GO:0004047 - aminomethyltransferase activity [Evidence IEA]
glycine cleavage system aminomethyltransferase GcvT
COORDINATES: nucleotide motif:Rfam:14.4:RF00504
glycine riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: protein motif:HMM:TIGR00705.1
GO:0008233 - peptidase activity [Evidence IEA]
GO:0006508 - proteolysis [Evidence IEA]; GO:0006465 - signal peptide processing [Evidence IEA]
COORDINATES: protein motif:HMM:NF002190.0
GO:0051745 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
GO:0050992 - dimethylallyl diphosphate biosynthetic process [Evidence IEA]; GO:0019288 - isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway [Evidence IEA]
4-hydroxy-3-methylbut-2-enyl diphosphate reductase
COORDINATES: protein motif:HMM:NF003558.0
GO:0004413 - homoserine kinase activity [Evidence IEA]
GO:0009088 - threonine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012304.2
GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0004523 - RNA-DNA hybrid ribonuclease activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012422.2
COORDINATES: protein motif:HMM:NF001268.0
COORDINATES: protein motif:HMM:NF014062.2
COORDINATES: protein motif:HMM:NF024030.2
COORDINATES: protein motif:HMM:NF024636.2
COORDINATES: protein motif:HMM:NF025850.2
COORDINATES: protein motif:HMM:TIGR00693.1
GO:0004789 - thiamine-phosphate diphosphorylase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01499.1
folylpolyglutamate synthase/dihydrofolate synthase family protein
COORDINATES: protein motif:HMM:TIGR00515.1
GO:0009317 - acetyl-CoA carboxylase complex [Evidence IEA]
GO:0003989 - acetyl-CoA carboxylase activity [Evidence IEA]
GO:0006633 - fatty acid biosynthetic process [Evidence IEA]
acetyl-CoA carboxylase, carboxyltransferase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_019977391.1
GO:0004834 - tryptophan synthase activity [Evidence IEA]
GO:0000162 - tryptophan biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020044135.1
COORDINATES: similar to AA sequence:RefSeq:WP_004201168.1
GO:0004640 - phosphoribosylanthranilate isomerase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF001273.0
GO:0004590 - orotidine-5'-phosphate decarboxylase activity [Evidence IEA]
GO:0006207 - 'de novo' pyrimidine nucleobase biosynthetic process [Evidence IEA]; GO:0044205 - 'de novo' UMP biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF018058.2
COORDINATES: similar to AA sequence:RefSeq:WP_009811081.1
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: protein motif:HMM:NF004955.0
GO:0003723 - RNA binding [Evidence IEA]; GO:0003735 - structural constituent of ribosome [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00017.1
GO:0004127 - cytidylate kinase activity [Evidence IEA]
GO:0015949 - nucleobase-containing small molecule interconversion [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01356.1
GO:0003866 - 3-phosphoshikimate 1-carboxyvinyltransferase activity [Evidence IEA]
GO:0009423 - chorismate biosynthetic process [Evidence IEA]
3-phosphoshikimate 1-carboxyvinyltransferase
COORDINATES: protein motif:HMM:NF021083.2
COORDINATES: protein motif:HMM:NF015737.2
autotransporter domain-containing protein
COORDINATES: protein motif:HMM:NF008006.0
GO:0008237 - metallopeptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02866.1
COORDINATES: protein motif:HMM:TIGR02891.1
COORDINATES: protein motif:HMM:NF003349.0
GO:0008495 - protoheme IX farnesyltransferase activity [Evidence IEA]
GO:0048034 - heme O biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF003465.0
COORDINATES: similar to AA sequence:RefSeq:WP_009827704.1
COORDINATES: protein motif:HMM:NF014193.2
COORDINATES: protein motif:HMM:TIGR00260.1
GO:0004795 - threonine synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF017044.2
COORDINATES: protein motif:HMM:NF016701.2
COORDINATES: protein motif:HMM:NF012273.2
COORDINATES: protein motif:HMM:TIGR01084.1
GO:0004844 - uracil DNA N-glycosylase activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: protein motif:HMM:NF017103.2
COORDINATES: protein motif:HMM:NF024853.2
COORDINATES: protein motif:HMM:TIGR02168.1
GO:0030261 - chromosome condensation [Evidence IEA]; GO:0007059 - chromosome segregation [Evidence IEA]
COORDINATES: protein motif:HMM:NF021073.2
COORDINATES: protein motif:HMM:NF004482.0
GO:0015986 - proton motive force-driven ATP synthesis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008595464.1
GO:0045263 - proton-transporting ATP synthase complex, coupling factor F(o) [Evidence IEA]
COORDINATES: protein motif:HMM:NF017242.2
COORDINATES: protein motif:HMM:NF012645.2
COORDINATES: protein motif:HMM:NF012955.2
COORDINATES: similar to AA sequence:RefSeq:WP_002714724.1
GO:0008299 - isoprenoid biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF020967.2
COORDINATES: protein motif:HMM:NF025217.2
COORDINATES: protein motif:HMM:NF013506.2
COORDINATES: similar to AA sequence:RefSeq:WP_020045290.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004820 - glycine-tRNA ligase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO:0006426 - glycyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00211.2
GO:0009345 - glycine-tRNA ligase complex [Evidence IEA]
GO:0004820 - glycine-tRNA ligase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016291309.1
GO:0050242 - pyruvate, phosphate dikinase activity [Evidence IEA]
GO:0015976 - carbon utilization [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020045195.1
GO:0003924 - GTPase activity [Evidence IEA]
GO:0006415 - translational termination [Evidence IEA]
COORDINATES: protein motif:HMM:NF018960.2
COORDINATES: protein motif:HMM:NF024978.2
COORDINATES: protein motif:HMM:NF014081.2
COORDINATES: protein motif:HMM:NF024242.2
COORDINATES: similar to AA sequence:RefSeq:WP_002883819.1
GO:0004845 - uracil phosphoribosyltransferase activity [Evidence IEA]
aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
COORDINATES: protein motif:HMM:NF019961.2
GO:0045892 - negative regulation of DNA-templated transcription [Evidence IEA]
TetR family transcriptional regulator C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF004770.0
pyridoxal phosphate-dependent aminotransferase
COORDINATES: protein motif:HMM:NF024950.2
COORDINATES: protein motif:HMM:NF024375.2
2,4'-dihydroxyacetophenone dioxygenase family protein
COORDINATES: protein motif:HMM:NF013757.2
COORDINATES: protein motif:HMM:NF010578.0
COORDINATES: protein motif:HMM:NF012725.2
COORDINATES: similar to AA sequence:RefSeq:WP_012536566.1
GO:0009001 - serine O-acetyltransferase activity [Evidence IEA]
GO:0006535 - cysteine biosynthetic process from serine [Evidence IEA]
COORDINATES: protein motif:HMM:NF007989.0
COORDINATES: protein motif:HMM:NF038006.1
GO:0015297 - antiporter activity [Evidence IEA]
GO:0006814 - sodium ion transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF022818.2
COORDINATES: protein motif:HMM:NF015983.2
COORDINATES: protein motif:HMM:TIGR01325.1
GO:0016835 - carbon-oxygen lyase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF003967.1
COORDINATES: protein motif:HMM:NF006826.0
GO:0003934 - GTP cyclohydrolase I activity [Evidence IEA]
GO:0042559 - pteridine-containing compound biosynthetic process [Evidence IEA]; GO:0046654 - tetrahydrofolate biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF014443.2
COORDINATES: protein motif:HMM:NF017770.2
COORDINATES: protein motif:HMM:NF013594.2
COORDINATES: protein motif:HMM:NF005710.0
GO:0008777 - acetylornithine deacetylase activity [Evidence IEA]
GO:0006592 - ornithine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008036492.1
GO:0003852 - 2-isopropylmalate synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010442888.1
COORDINATES: protein motif:HMM:TIGR00219.1
GO:0008360 - regulation of cell shape [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03426.1
COORDINATES: protein motif:HMM:TIGR03423.1
GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02210.1
COORDINATES: protein motif:HMM:TIGR00624.1
COORDINATES: protein motif:HMM:TIGR03317.1
mechanosensitive ion channel family protein
COORDINATES: protein motif:HMM:NF019604.2
COORDINATES: protein motif:HMM:NF028308.2
COORDINATES: protein motif:HMM:NF016156.2
COORDINATES: protein motif:HMM:NF012478.2
FKBP-type peptidyl-prolyl cis-trans isomerase
COORDINATES: similar to AA sequence:RefSeq:WP_018287644.1
COORDINATES: protein motif:HMM:NF012695.2
NTP transferase domain-containing protein
COORDINATES: protein motif:HMM:NF006691.0
GO:0046417 - chorismate metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF024832.2
COORDINATES: protein motif:HMM:NF013250.2
CDP-alcohol phosphatidyltransferase family protein
COORDINATES: protein motif:HMM:TIGR01930.1
GO:0003985 - acetyl-CoA C-acetyltransferase activity [Evidence IEA]
GO:0006631 - fatty acid metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF036525.2
COORDINATES: protein motif:HMM:NF006958.0
GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA]
methylmalonyl Co-A mutase-associated GTPase MeaB
COORDINATES: protein motif:HMM:NF014611.2
GO:0004592 - pantoate-beta-alanine ligase activity [Evidence IEA]
GO:0015940 - pantothenate biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF001452.0
GO:0003864 - 3-methyl-2-oxobutanoate hydroxymethyltransferase activity [Evidence IEA]
3-methyl-2-oxobutanoate hydroxymethyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_008756960.1
COORDINATES: protein motif:HMM:NF024836.2
COORDINATES: protein motif:HMM:TIGR01070.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0030983 - mismatched DNA binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF003467.0
GO:0008773 - [protein-PII] uridylyltransferase activity [Evidence IEA]
GO:0006807 - nitrogen compound metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01695.1
GO:0034204 - lipid translocation [Evidence IEA]; GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
murein biosynthesis integral membrane protein MurJ
COORDINATES: protein motif:HMM:TIGR00233.1
GO:0004830 - tryptophan-tRNA ligase activity [Evidence IEA]
GO:0006436 - tryptophanyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF021600.2
COORDINATES: protein motif:HMM:NF012791.2
COORDINATES: protein motif:HMM:NF020295.2
NifU N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF013286.2
COORDINATES: protein motif:HMM:NF013672.2
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
polysaccharide deacetylase family protein
COORDINATES: protein motif:HMM:TIGR03725.1
GO:0003725 - double-stranded RNA binding [Evidence IEA]
tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB
COORDINATES: protein motif:HMM:TIGR01575.1
GO:0008999 - peptide-alanine-alpha-N-acetyltransferase activity [Evidence IEA]
GO:0036211 - protein modification process [Evidence IEA]; GO:0042254 - ribosome biogenesis [Evidence IEA]
ribosomal protein S18-alanine N-acetyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_020056161.1
COORDINATES: protein motif:HMM:TIGR01574.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]; GO:0016782 - transferase activity, transferring sulphur-containing groups [Evidence IEA]
tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB
COORDINATES: protein motif:HMM:NF014605.2
COORDINATES: protein motif:HMM:NF014216.2
GO:0046872 - metal ion binding [Evidence IEA]; GO:0004540 - ribonuclease activity [Evidence IEA]
GO:0042254 - ribosome biogenesis [Evidence IEA]
COORDINATES: protein motif:HMM:NF015436.2
transporter associated domain-containing protein
COORDINATES: protein motif:HMM:TIGR00546.1
GO:0016410 - N-acyltransferase activity [Evidence IEA]
GO:0042158 - lipoprotein biosynthetic process [Evidence IEA]; GO:0006497 - protein lipidation [Evidence IEA]
COORDINATES: protein motif:HMM:NF024949.2
COORDINATES: protein motif:HMM:NF017880.2
COORDINATES: protein motif:HMM:NF003645.0
GO:0004152 - dihydroorotate dehydrogenase activity [Evidence IEA]
GO:0006207 - 'de novo' pyrimidine nucleobase biosynthetic process [Evidence IEA]
quinone-dependent dihydroorotate dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_015962150.1
GO:0008199 - ferric iron binding [Evidence IEA]; GO:0004322 - ferroxidase activity [Evidence IEA]
GO:0006880 - intracellular sequestering of iron ion [Evidence IEA]
COORDINATES: protein motif:HMM:NF016230.2
COORDINATES: protein motif:HMM:TIGR00014.1
GO:0008794 - arsenate reductase (glutaredoxin) activity [Evidence IEA]
This arsenate reductase requires both glutathione and glutaredoxin to convert arsenate to arsenite, after which the efflux transporter formed by ArsA and ArsB can extrude the arsenite from the cell, providing resistance.; This arsenate reductase requires both glutathione and glutaredoxin to convert arsenate to arsenite, after which the efflux transporter formed by ArsA and ArsB can extrude the arsenite from the cell, providing resistance; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF037959.1
COORDINATES: similar to AA sequence:RefSeq:WP_020801803.1
GO:0008460 - dTDP-glucose 4,6-dehydratase activity [Evidence IEA]
GO:0019305 - dTDP-rhamnose biosynthetic process [Evidence IEA]; GO:0009243 - O antigen biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016283109.1
GO:0008879 - glucose-1-phosphate thymidylyltransferase activity [Evidence IEA]
glucose-1-phosphate thymidylyltransferase RfbA
COORDINATES: similar to AA sequence:RefSeq:WP_002220108.1
GO:0008830 - dTDP-4-dehydrorhamnose 3,5-epimerase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01214.1
GO:0008831 - dTDP-4-dehydrorhamnose reductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF039190.1
COORDINATES: protein motif:HMM:TIGR00186.1
GO:0008173 - RNA methyltransferase activity [Evidence IEA]
GO:0009451 - RNA modification [Evidence IEA]
23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB
COORDINATES: similar to AA sequence:RefSeq:YP_499102.1
GO:0003746 - translation elongation factor activity [Evidence IEA]
GO:0006414 - translational elongation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00964.1
GO:0015450 - protein-transporting ATPase activity [Evidence IEA]
GO:0043952 - protein transport by the Sec complex [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004953928.1
GO:0006353 - DNA-templated transcription termination [Evidence IEA]
transcription termination/antitermination protein NusG
COORDINATES: similar to AA sequence:RefSeq:WP_017978227.1
GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]; GO:0000315 - organellar large ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010440987.1
COORDINATES: protein motif:HMM:NF000955.1
GO:0015934 - large ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001273587.1
COORDINATES: similar to AA sequence:RefSeq:WP_015488550.1
GO:0000345 - cytosolic DNA-directed RNA polymerase complex [Evidence IEA]
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity [Evidence IEA]
GO:0006351 - DNA-templated transcription [Evidence IEA]
DNA-directed RNA polymerase subunit beta
COORDINATES: protein motif:HMM:TIGR02386.1
DNA-directed RNA polymerase subunit beta'
COORDINATES: similar to AA sequence:RefSeq:WP_020185797.1
COORDINATES: similar to AA sequence:RefSeq:WP_013054923.1
COORDINATES: similar to AA sequence:RefSeq:WP_005229047.1
COORDINATES: similar to AA sequence:RefSeq:WP_005621947.1
COORDINATES: similar to AA sequence:RefSeq:WP_010404674.1
COORDINATES: protein motif:HMM:NF012782.2
GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009176651.1
COORDINATES: similar to AA sequence:RefSeq:WP_019297986.1
COORDINATES: similar to AA sequence:RefSeq:WP_011148791.1
COORDINATES: similar to AA sequence:RefSeq:WP_007206610.1
COORDINATES: similar to AA sequence:RefSeq:WP_016654883.1
GO:0022627 - cytosolic small ribosomal subunit [Evidence IEA]; GO:0000312 - plastid small ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003516136.1
COORDINATES: similar to AA sequence:RefSeq:WP_005980734.1
COORDINATES: similar to AA sequence:RefSeq:WP_006817275.1
COORDINATES: similar to AA sequence:RefSeq:WP_011567679.1
COORDINATES: similar to AA sequence:RefSeq:WP_000729185.1
COORDINATES: similar to AA sequence:RefSeq:WP_016281718.1
COORDINATES: similar to AA sequence:RefSeq:WP_004924130.1
COORDINATES: similar to AA sequence:RefSeq:WP_011148781.1
COORDINATES: similar to AA sequence:RefSeq:WP_003031129.1
GO:0019843 - rRNA binding [Evidence IEA]; GO:0003735 - structural constituent of ribosome [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008228122.1
COORDINATES: similar to AA sequence:RefSeq:WP_004106339.1
COORDINATES: similar to AA sequence:RefSeq:WP_018322272.1
COORDINATES: similar to AA sequence:RefSeq:WP_010734454.1
COORDINATES: similar to AA sequence:RefSeq:WP_004868351.1
COORDINATES: similar to AA sequence:RefSeq:WP_003128018.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0019205 - nucleobase-containing compound kinase activity [Evidence IEA]; GO:0016776 - phosphotransferase activity, phosphate group as acceptor [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000090796.1
GO:0022627 - cytosolic small ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003130556.1
COORDINATES: similar to AA sequence:RefSeq:WP_005970247.1
DNA-directed RNA polymerase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_017042856.1
GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]; GO:0005762 - mitochondrial large ribosomal subunit [Evidence IEA]
COORDINATES: protein motif:HMM:NF006628.0
GO:0004332 - fructose-bisphosphate aldolase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO:0006096 - glycolytic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF023428.2
replication-associated recombination protein A
COORDINATES: protein motif:HMM:NF014414.2
cyclopropane-fatty-acyl-phospholipid synthase family protein
COORDINATES: protein motif:HMM:NF010791.0
COORDINATES: protein motif:HMM:TIGR00005.1
COORDINATES: protein motif:HMM:NF024811.2
COORDINATES: protein motif:HMM:NF019180.2
COORDINATES: protein motif:HMM:NF013225.2
COORDINATES: protein motif:HMM:NF006367.0
acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha
COORDINATES: protein motif:HMM:NF012911.2
COORDINATES: protein motif:HMM:NF010921.0
GO:0033819 - lipoyl(octanoyl) transferase activity [Evidence IEA]
GO:0009249 - protein lipoylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF013236.2
FliM/FliN family flagellar motor switch protein
COORDINATES: protein motif:HMM:NF012664.2
COORDINATES: protein motif:HMM:NF013413.2
COORDINATES: protein motif:HMM:NF016816.2
COORDINATES: protein motif:HMM:NF018717.2
COORDINATES: protein motif:HMM:NF015858.2
alanine--glyoxylate aminotransferase family protein
COORDINATES: protein motif:HMM:TIGR00400.1
GO:0015095 - magnesium ion transmembrane transporter activity [Evidence IEA]
GO:0015693 - magnesium ion transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF019017.2
COORDINATES: protein motif:HMM:NF013954.2
GO:0004040 - amidase activity [Evidence IEA]
glucosaminidase domain-containing protein
COORDINATES: protein motif:HMM:NF020704.2
COORDINATES: protein motif:HMM:NF014877.2
COORDINATES: protein motif:HMM:NF000672.0
COORDINATES: protein motif:HMM:TIGR02639.1
GO:0009368 - endopeptidase Clp complex [Evidence IEA]
GO:0004176 - ATP-dependent peptidase activity [Evidence IEA]
GO:0043335 - protein unfolding [Evidence IEA]; GO:0006508 - proteolysis [Evidence IEA]
ATP-dependent Clp protease ATP-binding subunit ClpA
COORDINATES: protein motif:HMM:NF016242.2
COORDINATES: protein motif:HMM:NF025939.2
COORDINATES: protein motif:HMM:TIGR00254.1
COORDINATES: protein motif:HMM:NF002751.0
GO:0003684 - damaged DNA binding [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF023518.2
COORDINATES: similar to AA sequence:RefSeq:WP_003521498.1
COORDINATES: protein motif:HMM:NF007135.0
PleD family two-component system response regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011454349.1
COORDINATES: protein motif:HMM:TIGR02063.1
GO:0008997 - ribonuclease R activity [Evidence IEA]
GO:0006401 - RNA catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01051.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003917 - DNA topoisomerase type I (single strand cut, ATP-independent) activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]; GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00732.1
GO:0009294 - DNA-mediated transformation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00023.1
GO:0008374 - O-acyltransferase activity [Evidence IEA]
GO:0006654 - phosphatidic acid biosynthetic process [Evidence IEA]
glycerol-3-phosphate 1-O-acyltransferase PlsY
COORDINATES: protein motif:HMM:TIGR00857.1
GO:0004151 - dihydroorotase activity [Evidence IEA]
GO:0009220 - pyrimidine ribonucleotide biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00670.1
GO:0016597 - amino acid binding [Evidence IEA]; GO:0004070 - aspartate carbamoyltransferase activity [Evidence IEA]
GO:0006207 - 'de novo' pyrimidine nucleobase biosynthetic process [Evidence IEA]; GO:0006520 - amino acid metabolic process [Evidence IEA]
aspartate carbamoyltransferase catalytic subunit
COORDINATES: similar to AA sequence:RefSeq:WP_008036645.1
COORDINATES: nucleotide motif:Rfam:14.4:RF00059
TPP riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_000814451.1
GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF013253.2
COORDINATES: protein motif:HMM:NF013080.2
COORDINATES: protein motif:HMM:NF001770.0
GO:0004055 - argininosuccinate synthase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
GO:0006526 - arginine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF016214.2
COORDINATES: protein motif:HMM:NF024869.2
COORDINATES: protein motif:HMM:NF024214.2
COORDINATES: protein motif:HMM:NF013696.2
Lrp/AsnC family transcriptional regulator
COORDINATES: protein motif:HMM:NF009588.0
indolepyruvate ferredoxin oxidoreductase family protein
COORDINATES: protein motif:HMM:NF014827.2
GO:0006520 - amino acid metabolic process [Evidence IEA]
Glu/Leu/Phe/Val dehydrogenase dimerization domain-containing protein
COORDINATES: protein motif:HMM:NF012363.2
COORDINATES: protein motif:HMM:TIGR01814.1
GO:0030429 - kynureninase activity [Evidence IEA]
GO:0019441 - tryptophan catabolic process to kynurenine [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00697.1
GO:1990397 - queuosine salvage [Evidence IEA]
COORDINATES: protein motif:HMM:NF014805.2
COORDINATES: protein motif:HMM:NF019121.2
COORDINATES: protein motif:HMM:TIGR00633.1
GO:0008853 - exodeoxyribonuclease III activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014833873.1
GO:0016226 - iron-sulfur cluster assembly [Evidence IEA]
iron-sulfur cluster insertion protein ErpA
COORDINATES: protein motif:HMM:NF002326.0
GO:0016793 - triphosphoric monoester hydrolase activity [Evidence IEA]
deoxyguanosinetriphosphate triphosphohydrolase
COORDINATES: protein motif:HMM:TIGR00456.1
GO:0004814 - arginine-tRNA ligase activity [Evidence IEA]
GO:0006420 - arginyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF016895.2
COORDINATES: protein motif:HMM:NF003740.0
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
COORDINATES: protein motif:HMM:NF014244.2
COORDINATES: similar to AA sequence:RefSeq:WP_008036674.1
COORDINATES: protein motif:HMM:TIGR00281.1
GO:0007059 - chromosome segregation [Evidence IEA]
COORDINATES: protein motif:HMM:NF014470.2
GO:0015031 - protein transport [Evidence IEA]
twin-arginine translocase TatA/TatE family subunit
COORDINATES: protein motif:HMM:TIGR01410.1
GO:0015628 - protein secretion by the type II secretion system [Evidence IEA]; GO:0015031 - protein transport [Evidence IEA]
Sec-independent protein translocase protein TatB
COORDINATES: similar to AA sequence:RefSeq:WP_012975882.1
GO:0015628 - protein secretion by the type II secretion system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003218092.1
GO:0004828 - serine-tRNA ligase activity [Evidence IEA]
GO:0006434 - seryl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020045202.1
GO:0004719 - protein-L-isoaspartate (D-aspartate) O-methyltransferase activity [Evidence IEA]
GO:0036211 - protein modification process [Evidence IEA]
protein-L-isoaspartate(D-aspartate) O-methyltransferase
COORDINATES: protein motif:HMM:NF013703.2
GO:0004181 - metallocarboxypeptidase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF012512.2
COORDINATES: protein motif:HMM:NF012360.2
COORDINATES: protein motif:HMM:NF012790.2
COORDINATES: protein motif:HMM:TIGR00835.1
GO:0005416 - amino acid:monoatomic cation symporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF006604.0
COORDINATES: protein motif:HMM:NF004976.0
COORDINATES: similar to AA sequence:RefSeq:WP_020059785.1
GO:0042132 - fructose 1,6-bisphosphate 1-phosphatase activity [Evidence IEA]
GO:0006094 - gluconeogenesis [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00644.1
GO:0008297 - single-stranded DNA exodeoxyribonuclease activity [Evidence IEA]
single-stranded-DNA-specific exonuclease RecJ
COORDINATES: protein motif:HMM:NF017959.2
COORDINATES: protein motif:HMM:NF014564.2
CaiB/BaiF CoA-transferase family protein
COORDINATES: protein motif:HMM:NF008576.0
DNA-binding transcriptional regulator CsiR
HAMP domain-containing sensor histidine kinase
COORDINATES: protein motif:HMM:NF014763.2
GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: protein motif:HMM:NF012993.2
carbon-nitrogen hydrolase family protein
COORDINATES: protein motif:HMM:TIGR00229.1
COORDINATES: protein motif:HMM:NF016807.2
COORDINATES: protein motif:HMM:NF013584.2
COORDINATES: similar to AA sequence:RefSeq:WP_020057977.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004329 - formate-tetrahydrofolate ligase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02122.1
TAXI family TRAP transporter solute-binding subunit
COORDINATES: protein motif:HMM:TIGR02123.1
COORDINATES: protein motif:HMM:TIGR01783.1
GO:0015343 - siderophore-iron transmembrane transporter activity [Evidence IEA]
GO:0015891 - siderophore transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012763118.1
GO:0004635 - phosphoribosyl-AMP cyclohydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013629.2
COORDINATES: protein motif:HMM:NF007090.0
GO:0015633 - ABC-type zinc transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
GO:0006829 - zinc ion transport [Evidence IEA]
zinc ABC transporter ATP-binding protein ZnuC
COORDINATES: protein motif:HMM:NF013143.2
iron chelate uptake ABC transporter family permease subunit
COORDINATES: protein motif:HMM:TIGR01324.1
GO:0004121 - cystathionine beta-lyase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF008557.0
GO:0004792 - thiosulfate sulfurtransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03139.1
GO:0033739 - preQ1 synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF018513.2
COORDINATES: protein motif:HMM:NF016200.2
COORDINATES: protein motif:HMM:NF015445.2
twin-arginine translocation signal domain-containing protein
COORDINATES: protein motif:HMM:NF016277.2
COORDINATES: protein motif:HMM:NF015557.2
COORDINATES: protein motif:HMM:NF005600.0
COORDINATES: protein motif:HMM:TIGR03818.1
COORDINATES: protein motif:HMM:NF006762.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004655 - porphobilinogen synthase activity [Evidence IEA]
GO:0033014 - tetrapyrrole biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020092502.1
GO:0003870 - 5-aminolevulinate synthase activity [Evidence IEA]
GO:0006783 - heme biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013188.2
GO:0006812 - monoatomic cation transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF024860.2
COORDINATES: protein motif:HMM:NF024116.2
COORDINATES: protein motif:HMM:TIGR00689.1
GO:0004751 - ribose-5-phosphate isomerase activity [Evidence IEA]
GO:0009052 - pentose-phosphate shunt, non-oxidative branch [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008034798.1
COORDINATES: similar to AA sequence:RefSeq:WP_020044467.1
GO:0140110 - transcription regulator activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00326.1
GO:0008703 - 5-amino-6-(5-phosphoribosylamino)uracil reductase activity [Evidence IEA]; GO:0008835 - diaminohydroxyphosphoribosylaminopyrimidine deaminase activity [Evidence IEA]
bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD
COORDINATES: similar to AA sequence:RefSeq:WP_020044465.1
COORDINATES: protein motif:HMM:TIGR00506.1
GO:0008686 - 3,4-dihydroxy-2-butanone-4-phosphate synthase activity [Evidence IEA]
3,4-dihydroxy-2-butanone-4-phosphate synthase
COORDINATES: protein motif:HMM:NF000814.0
GO:0009349 - riboflavin synthase complex [Evidence IEA]
GO:0000906 - 6,7-dimethyl-8-ribityllumazine synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01951.1
transcription antitermination factor NusB
COORDINATES: protein motif:HMM:TIGR01379.1
GO:0009030 - thiamine-phosphate kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF016258.2
outer membrane protein assembly factor BamE
COORDINATES: protein motif:HMM:NF015914.2
ubiquinol-cytochrome C chaperone family protein
COORDINATES: protein motif:HMM:NF014657.2
COORDINATES: protein motif:HMM:TIGR00182.1
GO:0043811 - phosphate:acyl-[acyl carrier protein] acyltransferase activity [Evidence IEA]
GO:0008610 - lipid biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008036683.1
COORDINATES: similar to AA sequence:RefSeq:WP_008755922.1
COORDINATES: protein motif:HMM:NF024803.2
COORDINATES: protein motif:HMM:NF007153.0
GO:0008452 - RNA ligase activity [Evidence IEA]
GO:0006396 - RNA processing [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03072.1
GO:0003747 - translation release factor activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00608.1
COORDINATES: protein motif:HMM:TIGR00500.1
COORDINATES: protein motif:HMM:TIGR00230.1
GO:0000023 - maltose metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013183.2
COORDINATES: protein motif:HMM:NF021603.2
PAS domain-containing sensor histidine kinase
COORDINATES: protein motif:HMM:NF003406.0
GO:0003951 - NAD+ kinase activity [Evidence IEA]
GO:0019674 - NAD metabolic process [Evidence IEA]; GO:0006741 - NADP biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF018168.2
flagellar basal body rod C-terminal domain-containing protein
COORDINATES: protein motif:HMM:TIGR00580.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0003690 - double-stranded DNA binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF015870.2
succinate dehydrogenase assembly factor 2
COORDINATES: protein motif:HMM:NF008168.0
GO:0003678 - DNA helicase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF016340.2
GO:0008990 - rRNA (guanine-N2-)-methyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF016270.2
COORDINATES: protein motif:HMM:TIGR04408.1
GO:0015221 - lipopolysaccharide transmembrane transporter activity [Evidence IEA]
GO:0015920 - lipopolysaccharide transport [Evidence IEA]
LPS export ABC transporter permease LptG
COORDINATES: protein motif:HMM:TIGR04407.1
LPS export ABC transporter permease LptF
COORDINATES: protein motif:HMM:NF012759.2
COORDINATES: protein motif:HMM:NF016228.2
COORDINATES: protein motif:HMM:NF006624.1
COORDINATES: protein motif:HMM:NF014668.2
COORDINATES: protein motif:HMM:NF008346.0
COORDINATES: protein motif:HMM:NF024600.2
COORDINATES: protein motif:HMM:NF018184.2
COORDINATES: similar to AA sequence:RefSeq:WP_010257694.1
COORDINATES: similar to AA sequence:RefSeq:WP_012222082.1
COORDINATES: protein motif:HMM:NF015146.2
COORDINATES: protein motif:HMM:NF014045.2
COORDINATES: protein motif:HMM:TIGR01498.1
GO:0003848 - 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity [Evidence IEA]
2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase
COORDINATES: similar to AA sequence:RefSeq:WP_011315179.1
DNA-directed RNA polymerase subunit omega
COORDINATES: protein motif:HMM:TIGR00691.1
bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
COORDINATES: protein motif:HMM:TIGR01367.1
GO:0004588 - orotate phosphoribosyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF021363.2
COORDINATES: similar to AA sequence:RefSeq:WP_020044621.1
GO:0033856 - pyridoxine 5'-phosphate synthase activity [Evidence IEA]
GO:0008615 - pyridoxine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017980640.1
GO:0008897 - holo-[acyl-carrier-protein] synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02227.1
GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
GO:0009306 - protein secretion [Evidence IEA]; GO:0006465 - signal peptide processing [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02191.1
GO:0004525 - ribonuclease III activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020044625.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01885.1
GO:0004587 - ornithine-oxo-acid transaminase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01229.1
GO:0004053 - arginase activity [Evidence IEA]
GO:0019547 - arginine catabolic process to ornithine [Evidence IEA]
COORDINATES: protein motif:HMM:NF012245.2
COORDINATES: similar to AA sequence:RefSeq:WP_008036565.1
GO:0030956 - glutamyl-tRNA(Gln) amidotransferase complex [Evidence IEA]
GO:0050567 - glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity [Evidence IEA]
GO:0006424 - glutamyl-tRNA aminoacylation [Evidence IEA]
Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC
COORDINATES: protein motif:HMM:TIGR00132.1
Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA
COORDINATES: protein motif:HMM:NF004015.0
GO:0016884 - carbon-nitrogen ligase activity, with glutamine as amido-N-donor [Evidence IEA]
Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB
COORDINATES: protein motif:HMM:NF019843.2
COORDINATES: protein motif:HMM:NF024093.2
COORDINATES: protein motif:HMM:NF022041.2
Tom37 metaxin N-terminal-like domain-containing protein
COORDINATES: protein motif:HMM:NF039682.1
COORDINATES: protein motif:HMM:TIGR00498.1
GO:0006282 - regulation of DNA repair [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: protein motif:HMM:NF022598.2
COORDINATES: protein motif:HMM:NF012464.2
COORDINATES: protein motif:HMM:NF016430.2
sigma-70 family RNA polymerase sigma factor
COORDINATES: protein motif:HMM:NF024870.2
COORDINATES: similar to AA sequence:RefSeq:WP_009521739.1
COORDINATES: protein motif:HMM:NF037510.2
COORDINATES: protein motif:HMM:NF039802.1
COORDINATES: protein motif:HMM:NF024117.2
COORDINATES: protein motif:HMM:NF024872.2
COORDINATES: similar to AA sequence:RefSeq:WP_004869876.1
COORDINATES: protein motif:HMM:NF040395.1
COORDINATES: similar to AA sequence:RefSeq:WP_018303644.1
COORDINATES: protein motif:HMM:NF013704.2
COORDINATES: protein motif:HMM:NF023420.2
COORDINATES: similar to AA sequence:RefSeq:WP_017364484.1
COORDINATES: similar to AA sequence:RefSeq:WP_004629278.1
COORDINATES: protein motif:HMM:NF017673.2
phage terminase large subunit family protein
COORDINATES: protein motif:HMM:NF014846.2
GO:0019058 - viral life cycle [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01539.1
GO:0044423 - virion component [Evidence IEA]
GO:0019068 - virion assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004629291.1
COORDINATES: similar to AA sequence:RefSeq:WP_016063622.1
COORDINATES: protein motif:HMM:NF018472.2
COORDINATES: protein motif:HMM:TIGR01644.1
COORDINATES: similar to AA sequence:RefSeq:WP_016063627.1
COORDINATES: protein motif:HMM:NF016736.2
COORDINATES: protein motif:HMM:NF021220.2
COORDINATES: protein motif:HMM:NF027401.2
COORDINATES: protein motif:HMM:NF016845.2
phage tail sheath subtilisin-like domain-containing protein
COORDINATES: protein motif:HMM:NF016846.2
GO:0016032 - viral process [Evidence IEA]
COORDINATES: protein motif:HMM:NF021614.2
COORDINATES: protein motif:HMM:TIGR01760.1
COORDINATES: protein motif:HMM:NF018674.2
COORDINATES: similar to AA sequence:RefSeq:WP_008266797.1
COORDINATES: protein motif:HMM:NF017739.2
contractile injection system protein, VgrG/Pvc8 family
COORDINATES: similar to AA sequence:RefSeq:WP_013654759.1
COORDINATES: protein motif:HMM:NF013152.2
COORDINATES: protein motif:HMM:TIGR00348.1
GO:0019812 - type I site-specific deoxyribonuclease complex [Evidence IEA]
GO:0009035 - type I site-specific deoxyribonuclease activity [Evidence IEA]
GO:0009307 - DNA restriction-modification system [Evidence IEA]
HsdR family type I site-specific deoxyribonuclease
COORDINATES: protein motif:HMM:NF013579.2
COORDINATES: protein motif:HMM:NF014442.2
class I SAM-dependent DNA methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_017114798.1
COORDINATES: protein motif:HMM:NF014624.2
metal-sensitive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012092687.1
COORDINATES: similar to AA sequence:RefSeq:WP_018065817.1
COORDINATES: protein motif:HMM:NF016149.2
GO:0042597 - periplasmic space [Evidence IEA]
GO:0005507 - copper ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF017262.2
COORDINATES: protein motif:HMM:NF019352.2
COORDINATES: similar to AA sequence:RefSeq:WP_018065820.1
COORDINATES: protein motif:HMM:NF004939.0
autotransporter outer membrane beta-barrel domain-containing protein
COORDINATES: protein motif:HMM:NF015605.2
COORDINATES: protein motif:HMM:NF024824.2
COORDINATES: protein motif:HMM:NF012958.2
COORDINATES: protein motif:HMM:NF018178.2
COORDINATES: protein motif:HMM:TIGR00492.1
GO:0008784 - alanine racemase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF015535.2
COORDINATES: protein motif:HMM:NF024109.2
COORDINATES: protein motif:HMM:NF005292.0
COORDINATES: protein motif:HMM:NF033788.1
COORDINATES: protein motif:HMM:NF019928.2
The N-terminal region of this protein, as described by TIGR01726, is a three transmembrane segment that identifies a subfamily of ABC transporter permease subunits, which specificities that include histidine, arginine, glutamine, glutamate, L-cystine (sic), the opines (in Agrobacterium) octopine and nopaline, etc.; The N-terminal region of this protein, as described by TIGR01726, is a three transmembrane segment that identifies a subfamily of ABC transporter permease subunits, which specificities that include histidine, arginine, glutamine, glutamate, L-cystine (sic), the opines (in Agrobacterium) octopine and nopaline, etc; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_016293381.1
amino acid ABC transporter ATP-binding protein
COORDINATES: protein motif:HMM:NF013292.2
COORDINATES: protein motif:HMM:NF012707.2
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
transporter substrate-binding domain-containing protein
COORDINATES: protein motif:HMM:NF015866.2
GO:0055070 - copper ion homeostasis [Evidence IEA]
COORDINATES: protein motif:HMM:NF005702.0
COORDINATES: protein motif:HMM:TIGR00813.1
Members of the Solute:Sodium Symporter (SSS), TC 2.A.21 as described in tcdb.org, catalyze solute:Na+ symport. Known solutes for members of the family include sugars, amino acids, nucleosides, inositols, vitamins, urea or anions, depending on the system.; Members of the Solute:Sodium Symporter (SSS), TC 2.A.21 as described in tcdb.org, catalyze solute:Na+ symport. Known solutes for members of the family include sugars, amino acids, nucleosides, inositols, vitamins, urea or anions, depending on the system; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF025042.2
COORDINATES: protein motif:HMM:NF025146.2
COORDINATES: protein motif:HMM:NF017319.2
ABC transporter substrate-binding protein
GO:0005886 - plasma membrane [Evidence IEA]; GO:0031317 - tripartite ATP-independent periplasmic transporter complex [Evidence IEA]
GO:0015556 - C4-dicarboxylate transmembrane transporter activity [Evidence IEA]
GO:0015740 - C4-dicarboxylate transport [Evidence IEA]
TRAP transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF025910.2
COORDINATES: protein motif:HMM:NF001995.1
GO:0048027 - mRNA 5'-UTR binding [Evidence IEA]
GO:0006402 - mRNA catabolic process [Evidence IEA]; GO:1902209 - negative regulation of bacterial-type flagellum assembly [Evidence IEA]
COORDINATES: protein motif:HMM:NF018959.2
GO:0044781 - bacterial-type flagellum organization [Evidence IEA]
COORDINATES: protein motif:HMM:NF012874.2
COORDINATES: protein motif:HMM:NF015602.2
COORDINATES: protein motif:HMM:NF021638.2
COORDINATES: protein motif:HMM:NF003676.1
flagellar basal body P-ring protein FlgI
COORDINATES: protein motif:HMM:NF022227.2
COORDINATES: protein motif:HMM:TIGR02420.1
GO:0019899 - enzyme binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF025887.2
COORDINATES: protein motif:HMM:NF015693.2
GO:0009425 - bacterial-type flagellum basal body [Evidence IEA]
GO:0071973 - bacterial-type flagellum-dependent cell motility [Evidence IEA]; GO:0006935 - chemotaxis [Evidence IEA]
flagellar basal body-associated FliL family protein
COORDINATES: protein motif:HMM:TIGR01397.1
COORDINATES: protein motif:HMM:NF039465.1
COORDINATES: protein motif:HMM:NF015413.2
COORDINATES: protein motif:HMM:NF009438.0
The bacterial flagellar biogenesis protein FliP forms a type III secretion system (T3SS)-type pore required for flagellar assembly.; The bacterial flagellar biogenesis protein FliP forms a type III secretion system (T3SS)-type pore required for flagellar assembly; Derived by automated computational analysis using gene prediction method: Protein Homology.
flagellar type III secretion system pore protein FliP
COORDINATES: protein motif:HMM:NF016250.2
COORDINATES: protein motif:HMM:NF013479.2
EscU/YscU/HrcU family type III secretion system export apparatus switch protein
COORDINATES: protein motif:HMM:TIGR01396.1
GO:0009429 - bacterial-type flagellum basal body, proximal rod [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01395.1
COORDINATES: protein motif:HMM:NF014143.2
GO:0003774 - cytoskeletal motor activity [Evidence IEA]; GO:0005198 - structural molecule activity [Evidence IEA]
flagellar hook-basal body complex protein FliE
COORDINATES: protein motif:HMM:NF004671.0
COORDINATES: protein motif:HMM:TIGR01400.1
GO:0044780 - bacterial-type flagellum assembly [Evidence IEA]; GO:0006605 - protein targeting [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00328.1
COORDINATES: protein motif:HMM:TIGR02012.1
GO:0008094 - ATP-dependent activity, acting on DNA [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0009432 - SOS response [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00344.1
GO:0004813 - alanine-tRNA ligase activity [Evidence IEA]
GO:0006419 - alanyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF012730.2
COORDINATES: similar to AA sequence:RefSeq:WP_008033500.1
GO:0004450 - isocitrate dehydrogenase (NADP+) activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0051287 - NAD binding [Evidence IEA]
GO:0006102 - isocitrate metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00730.1
COORDINATES: protein motif:HMM:NF013630.2
LysM peptidoglycan-binding domain-containing protein
COORDINATES: protein motif:HMM:NF012869.2
ABC transporter ATP-binding protein/permease
COORDINATES: protein motif:HMM:NF003677.0
COORDINATES: protein motif:HMM:TIGR00473.1
GO:0003882 - CDP-diacylglycerol-serine O-phosphatidyltransferase activity [Evidence IEA]
GO:0008654 - phospholipid biosynthetic process [Evidence IEA]
CDP-diacylglycerol--serine O-phosphatidyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_018678638.1
GO:0004356 - glutamate-ammonia ligase activity [Evidence IEA]
GO:0006542 - glutamine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015367937.1
COORDINATES: protein motif:HMM:TIGR00196.1
GO:0052855 - ADP-dependent NAD(P)H-hydrate dehydratase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00115.1
GO:0005854 - nascent polypeptide-associated complex [Evidence IEA]
GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IEA]; GO:0051082 - unfolded protein binding [Evidence IEA]
GO:0051083 - 'de novo' cotranslational protein folding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020044449.1
GO:0004176 - ATP-dependent peptidase activity [Evidence IEA]; GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
ATP-dependent Clp endopeptidase proteolytic subunit ClpP
COORDINATES: similar to AA sequence:RefSeq:WP_016290038.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0046983 - protein dimerization activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
ATP-dependent Clp protease ATP-binding subunit ClpX
COORDINATES: protein motif:HMM:NF008053.0
GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0004176 - ATP-dependent peptidase activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008352404.1
COORDINATES: similar to AA sequence:RefSeq:WP_012748607.1
COORDINATES: protein motif:HMM:NF005012.1
COORDINATES: protein motif:HMM:NF004733.0
GO:0008137 - NADH dehydrogenase (ubiquinone) activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01962.1
GO:0051287 - NAD binding [Evidence IEA]; GO:0016651 - oxidoreductase activity, acting on NAD(P)H [Evidence IEA]; GO:0048038 - quinone binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF005725.0
NADH-quinone oxidoreductase subunit NuoE
COORDINATES: protein motif:HMM:NF010120.0
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0010181 - FMN binding [Evidence IEA]; GO:0051287 - NAD binding [Evidence IEA]; GO:0008137 - NADH dehydrogenase (ubiquinone) activity [Evidence IEA]
NADH-quinone oxidoreductase subunit NuoF
COORDINATES: protein motif:HMM:TIGR01973.1
GO:0050136 - NADH dehydrogenase (quinone) activity [Evidence IEA]
GO:0006120 - mitochondrial electron transport, NADH to ubiquinone [Evidence IEA]
NADH-quinone oxidoreductase subunit NuoG
COORDINATES: protein motif:HMM:NF004745.0
GO:0016651 - oxidoreductase activity, acting on NAD(P)H [Evidence IEA]
NADH-quinone oxidoreductase subunit NuoH
COORDINATES: protein motif:HMM:NF004538.0
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0016651 - oxidoreductase activity, acting on NAD(P)H [Evidence IEA]
NADH-quinone oxidoreductase subunit NuoI
COORDINATES: protein motif:HMM:NF005164.0
COORDINATES: similar to AA sequence:RefSeq:WP_011463804.1
GO:0042773 - ATP synthesis coupled electron transport [Evidence IEA]
NADH-quinone oxidoreductase subunit NuoK
COORDINATES: protein motif:HMM:NF005141.0
COORDINATES: protein motif:HMM:NF004499.0
COORDINATES: protein motif:HMM:NF004440.0
NADH-quinone oxidoreductase subunit NuoN
COORDINATES: protein motif:HMM:TIGR00121.1
GO:0004077 - biotin-[acetyl-CoA-carboxylase] ligase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF009844.0
GO:0004594 - pantothenate kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020044251.1
COORDINATES: protein motif:HMM:NF018978.2
COORDINATES: protein motif:HMM:NF008979.0
GO:0004827 - proline-tRNA ligase activity [Evidence IEA]
GO:0006433 - prolyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02212.1
GO:0042953 - lipoprotein transport [Evidence IEA]
lipoprotein-releasing ABC transporter permease subunit
COORDINATES: similar to AA sequence:RefSeq:WP_008034840.1
GO:0008484 - sulfuric ester hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF020157.2
COORDINATES: protein motif:HMM:NF004226.0
GO:0008408 - 3'-5' exonuclease activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF012514.2
COORDINATES: similar to AA sequence:RefSeq:WP_005132117.1
COORDINATES: similar to AA sequence:RefSeq:WP_020044037.1
COORDINATES: similar to AA sequence:RefSeq:WP_020044765.1
GO:0033862 - UMP kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020044764.1
GO:0008135 - translation factor activity, RNA binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF011405.0
GO:0016765 - transferase activity, transferring alkyl or aryl (other than methyl) groups [Evidence IEA]
COORDINATES: protein motif:HMM:NF013327.2
COORDINATES: protein motif:HMM:NF009114.0
GO:0030604 - 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0070402 - NADPH binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
1-deoxy-D-xylulose-5-phosphate reductoisomerase
GO:0004222 - metalloendopeptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03303.1
GO:0009279 - cell outer membrane [Evidence IEA]
outer membrane protein assembly factor BamA
COORDINATES: protein motif:HMM:NF015871.2
COORDINATES: protein motif:HMM:TIGR01750.1
GO:0016836 - hydro-lyase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00068.2
GO:0004462 - lactoylglutathione lyase activity [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO:0051596 - methylglyoxal catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF004126.0
GO:0046912 - acyltransferase activity, acyl groups converted into alkyl on transfer [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00464.1
GO:0009332 - glutamate-tRNA ligase complex [Evidence IEA]
GO:0004818 - glutamate-tRNA ligase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF015714.2
COORDINATES: protein motif:HMM:NF014795.2
COORDINATES: protein motif:HMM:NF003673.1
GO:0009380 - excinuclease repair complex [Evidence IEA]
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
GO:0006289 - nucleotide-excision repair [Evidence IEA]
COORDINATES: protein motif:HMM:NF015431.2
COORDINATES: similar to AA sequence:RefSeq:WP_011347508.1
GO:0004791 - thioredoxin-disulfide reductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00757.1
GO:0004540 - ribonuclease activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013670.2
COORDINATES: similar to AA sequence:RefSeq:WP_099474868.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013915.2
GO:0008961 - phosphatidylglycerol-prolipoprotein diacylglyceryl transferase activity [Evidence IEA]
GO:0042158 - lipoprotein biosynthetic process [Evidence IEA]
prolipoprotein diacylglyceryl transferase
COORDINATES: protein motif:HMM:NF016408.2
COORDINATES: protein motif:HMM:NF039598.1
COORDINATES: protein motif:HMM:NF016212.2
COORDINATES: protein motif:HMM:NF006960.0
GO:0016209 - antioxidant activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF010706.0
GO:0008882 - [glutamate-ammonia-ligase] adenylyltransferase activity [Evidence IEA]
bifunctional [glutamine synthetase] adenylyltransferase/[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
COORDINATES: protein motif:HMM:NF024516.2
AsmA-like C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF014114.2
COORDINATES: protein motif:HMM:TIGR00234.1
GO:0004831 - tyrosine-tRNA ligase activity [Evidence IEA]
GO:0006437 - tyrosyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF007141.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0008080 - N-acetyltransferase activity [Evidence IEA]
GO:0006040 - amino sugar metabolic process [Evidence IEA]; GO:0009254 - peptidoglycan turnover [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020044860.1
COORDINATES: protein motif:HMM:NF002806.0
COORDINATES: protein motif:HMM:NF012863.2
COORDINATES: protein motif:HMM:NF014717.2
COORDINATES: protein motif:HMM:NF014517.2
COORDINATES: protein motif:HMM:NF016489.2
COORDINATES: protein motif:HMM:NF006899.0
GO:0008685 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity [Evidence IEA]; GO:0050518 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity [Evidence IEA]
GO:0008299 - isoprenoid biosynthetic process [Evidence IEA]; GO:0016114 - terpenoid biosynthetic process [Evidence IEA]
bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
COORDINATES: similar to AA sequence:RefSeq:WP_010962313.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0017150 - tRNA dihydrouridine synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01818.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000156 - phosphorelay response regulator activity [Evidence IEA]
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006808 - regulation of nitrogen utilization [Evidence IEA]
COORDINATES: protein motif:HMM:NF039586.1
COORDINATES: protein motif:HMM:NF025885.2
sigma-54 dependent transcriptional regulator
COORDINATES: protein motif:HMM:NF007031.0
GO:0015079 - potassium ion transmembrane transporter activity [Evidence IEA]
GO:0006813 - potassium ion transport [Evidence IEA]
GO:0008324 - monoatomic cation transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008385166.1
COORDINATES: protein motif:HMM:TIGR03156.1
COORDINATES: protein motif:HMM:NF012673.2
COORDINATES: protein motif:HMM:NF027232.2
COORDINATES: protein motif:HMM:NF007113.1
nucleoside triphosphate pyrophosphohydrolase
COORDINATES: protein motif:HMM:NF024698.2
COORDINATES: protein motif:HMM:NF025305.2
COORDINATES: protein motif:HMM:TIGR03648.1
COORDINATES: protein motif:HMM:NF038216.1
COORDINATES: protein motif:HMM:TIGR00754.1
COORDINATES: similar to AA sequence:RefSeq:WP_020044297.1
COORDINATES: protein motif:HMM:NF012442.2
COORDINATES: protein motif:HMM:TIGR02258.1
GO:0008664 - 2'-5'-RNA ligase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014476.2
COORDINATES: similar to AA sequence:RefSeq:WP_008680044.1
COORDINATES: protein motif:HMM:NF024829.2
HlyD family efflux transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_002080223.1
COORDINATES: protein motif:HMM:NF014708.2
COORDINATES: protein motif:HMM:NF012387.2
COORDINATES: protein motif:HMM:NF024812.2
COORDINATES: protein motif:HMM:NF025004.2
gluconate 2-dehydrogenase subunit 3 family protein
COORDINATES: protein motif:HMM:TIGR00931.1
GO:0015385 - sodium:proton antiporter activity [Evidence IEA]
GO:1902600 - proton transmembrane transport [Evidence IEA]; GO:0006814 - sodium ion transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF012976.2
COORDINATES: similar to AA sequence:RefSeq:WP_020044216.1
GO:0018578 - protocatechuate 3,4-dioxygenase activity [Evidence IEA]
GO:0046278 - 3,4-dihydroxybenzoate metabolic process [Evidence IEA]
protocatechuate 3,4-dioxygenase subunit alpha
COORDINATES: protein motif:HMM:NF017652.2
3-keto-5-aminohexanoate cleavage protein
COORDINATES: protein motif:HMM:NF005685.0
GO:0008410 - CoA-transferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02283.1
COORDINATES: protein motif:HMM:TIGR00413.1
septal ring lytic transglycosylase RlpA family protein
COORDINATES: protein motif:HMM:NF012970.2
D-alanyl-D-alanine carboxypeptidase family protein
COORDINATES: protein motif:HMM:TIGR00041.1
GO:0004798 - thymidylate kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF005677.0
COORDINATES: protein motif:HMM:NF008900.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0004825 - methionine-tRNA ligase activity [Evidence IEA]; GO:0000049 - tRNA binding [Evidence IEA]
GO:0006431 - methionyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00010.1
COORDINATES: protein motif:HMM:NF024118.2
COORDINATES: protein motif:HMM:TIGR01416.1
GO:0045275 - respiratory chain complex III [Evidence IEA]
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0008121 - ubiquinol-cytochrome-c reductase activity [Evidence IEA]
GO:0009060 - aerobic respiration [Evidence IEA]
ubiquinol-cytochrome c reductase iron-sulfur subunit
COORDINATES: protein motif:HMM:NF012263.2
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
cytochrome b N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF014247.2
COORDINATES: similar to AA sequence:RefSeq:WP_008036535.1
GO:0017061 - S-methyl-5-thioadenosine phosphorylase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF002634.0
GO:0003999 - adenine phosphoribosyltransferase activity [Evidence IEA]
GO:0006168 - adenine salvage [Evidence IEA]; GO:0009116 - nucleoside metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF025054.2
helix-turn-helix domain-containing GNAT family N-acetyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_019469841.1
COORDINATES: protein motif:HMM:NF013368.2
GO:0004045 - aminoacyl-tRNA hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF004128.0
GO:0008097 - 5S rRNA binding [Evidence IEA]; GO:0003735 - structural constituent of ribosome [Evidence IEA]
50S ribosomal protein L25/general stress protein Ctc
COORDINATES: similar to AA sequence:RefSeq:WP_016426512.1
COORDINATES: protein motif:HMM:NF014619.2
COORDINATES: protein motif:HMM:NF014673.2
COORDINATES: protein motif:HMM:TIGR00544.1
COORDINATES: protein motif:HMM:NF016280.2
COORDINATES: protein motif:HMM:NF022182.2
COORDINATES: protein motif:HMM:TIGR00112.1
GO:0004735 - pyrroline-5-carboxylate reductase activity [Evidence IEA]
GO:0006561 - proline biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008036467.1
COORDINATES: protein motif:HMM:NF005726.0
GO:0004084 - branched-chain-amino-acid transaminase activity [Evidence IEA]
GO:0009081 - branched-chain amino acid metabolic process [Evidence IEA]
branched-chain amino acid aminotransferase
COORDINATES: protein motif:HMM:TIGR01062.1
GO:0009340 - DNA topoisomerase IV complex [Evidence IEA]
COORDINATES: protein motif:HMM:NF013316.2
U32 family peptidase C-terminal domain-containing protein
COORDINATES: protein motif:HMM:TIGR00613.1
COORDINATES: protein motif:HMM:NF015418.2
COORDINATES: similar to AA sequence:RefSeq:WP_001612668.1
cyclic pyranopterin monophosphate synthase MoaC
COORDINATES: protein motif:HMM:NF001377.0
GO:0004425 - indole-3-glycerol-phosphate synthase activity [Evidence IEA]
GO:0006568 - tryptophan metabolic process [Evidence IEA]
indole-3-glycerol phosphate synthase TrpC
COORDINATES: protein motif:HMM:TIGR01245.1
GO:0004048 - anthranilate phosphoribosyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00566.1
aminodeoxychorismate/anthranilate synthase component II
COORDINATES: protein motif:HMM:TIGR00976.1
COORDINATES: protein motif:HMM:NF017532.2
phytanoyl-CoA dioxygenase family protein
COORDINATES: protein motif:HMM:NF009557.0
GO:0009014 - succinyl-diaminopimelate desuccinylase activity [Evidence IEA]
GO:0009089 - lysine biosynthetic process via diaminopimelate [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008035733.1
GO:0008666 - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase activity [Evidence IEA]
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_020055946.1
GO:0008840 - 4-hydroxy-tetrahydrodipicolinate synthase activity [Evidence IEA]
4-hydroxy-tetrahydrodipicolinate synthase
COORDINATES: protein motif:HMM:TIGR00036.1
GO:0008839 - 4-hydroxy-tetrahydrodipicolinate reductase [Evidence IEA]
4-hydroxy-tetrahydrodipicolinate reductase
COORDINATES: protein motif:HMM:NF024503.2
GO:0015291 - secondary active transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014587.2
COORDINATES: protein motif:HMM:NF013856.2
COORDINATES: protein motif:HMM:NF028468.2
LysR substrate-binding domain-containing protein
COORDINATES: protein motif:HMM:NF014665.2
GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
GO:0006784 - heme A biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008919631.1
COORDINATES: similar to AA sequence:RefSeq:WP_004695095.1
COORDINATES: protein motif:HMM:NF024273.2
COORDINATES: protein motif:HMM:TIGR00035.1
aspartate/glutamate racemase family protein
COORDINATES: protein motif:HMM:NF013331.2
COORDINATES: protein motif:HMM:NF012402.2
COORDINATES: protein motif:HMM:TIGR01850.1
GO:0003942 - N-acetyl-gamma-glutamyl-phosphate reductase activity [Evidence IEA]
N-acetyl-gamma-glutamyl-phosphate reductase
COORDINATES: protein motif:HMM:NF024818.2
COORDINATES: protein motif:HMM:NF013345.2
COORDINATES: protein motif:HMM:NF037016.2
COORDINATES: protein motif:HMM:NF026177.2
COORDINATES: protein motif:HMM:NF012573.2
COORDINATES: protein motif:HMM:NF019375.2
COORDINATES: protein motif:HMM:NF007764.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
30S ribosomal protein S6--L-glutamate ligase
COORDINATES: protein motif:HMM:NF013691.2
COORDINATES: protein motif:HMM:TIGR00639.1
GO:0004644 - phosphoribosylglycinamide formyltransferase activity [Evidence IEA]
GO:0009152 - purine ribonucleotide biosynthetic process [Evidence IEA]
phosphoribosylglycinamide formyltransferase
COORDINATES: protein motif:HMM:TIGR00878.1
GO:0004641 - phosphoribosylformylglycinamidine cyclo-ligase activity [Evidence IEA]
phosphoribosylformylglycinamidine cyclo-ligase
COORDINATES: protein motif:HMM:NF021367.2
COORDINATES: protein motif:HMM:NF012529.2
COORDINATES: protein motif:HMM:NF003919.0
GO:0009358 - polyphosphate kinase complex [Evidence IEA]
GO:0008976 - polyphosphate kinase activity [Evidence IEA]
GO:0006799 - polyphosphate biosynthetic process [Evidence IEA]
histidine kinase dimerization/phospho-acceptor domain-containing protein
COORDINATES: protein motif:HMM:NF013429.2
COORDINATES: protein motif:HMM:NF015531.2
GO:0008236 - serine-type peptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01388.1
GO:0016891 - endoribonuclease activity, producing 5'-phosphomonoesters [Evidence IEA]
COORDINATES: protein motif:HMM:NF001750.0
GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016874 - ligase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF013939.2
COORDINATES: protein motif:HMM:NF012492.2
COORDINATES: protein motif:HMM:NF016839.2
septum formation initiator family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008033944.1
GO:0045250 - cytosolic pyruvate dehydrogenase complex [Evidence IEA]
GO:0004739 - pyruvate dehydrogenase (acetyl-transferring) activity [Evidence IEA]
GO:0006086 - acetyl-CoA biosynthetic process from pyruvate [Evidence IEA]
pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha
COORDINATES: protein motif:HMM:NF008854.0
pyruvate dehydrogenase complex E1 component subunit beta
COORDINATES: protein motif:HMM:TIGR01349.1
GO:0045254 - pyruvate dehydrogenase complex [Evidence IEA]
GO:0004742 - dihydrolipoyllysine-residue acetyltransferase activity [Evidence IEA]; GO:0004738 - pyruvate dehydrogenase activity [Evidence IEA]
pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase
COORDINATES: protein motif:HMM:TIGR01350.1
GO:0004148 - dihydrolipoyl dehydrogenase activity [Evidence IEA]
GO:0045454 - cell redox homeostasis [Evidence IEA]; GO:0051068 - dihydrolipoamide metabolic process [Evidence IEA]; GO:0006096 - glycolytic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00510.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0016992 - lipoate synthase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
GO:0009107 - lipoate biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF015331.2
type II toxin-antitoxin system RatA family toxin
COORDINATES: protein motif:HMM:NF013540.2
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF012452.2
COORDINATES: protein motif:HMM:NF015368.2
COORDINATES: protein motif:HMM:NF014625.2
COORDINATES: protein motif:HMM:TIGR00838.1
GO:0004056 - argininosuccinate lyase activity [Evidence IEA]
GO:0042450 - arginine biosynthetic process via ornithine [Evidence IEA]
GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF008653.0
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC
COORDINATES: protein motif:HMM:NF016915.2
COORDINATES: protein motif:HMM:NF003727.1
GO:0004109 - coproporphyrinogen oxidase activity [Evidence IEA]
oxygen-dependent coproporphyrinogen oxidase
COORDINATES: protein motif:HMM:NF012797.2
tRNA (cytidine(34)-2'-O)-methyltransferase
COORDINATES: protein motif:HMM:TIGR02246.1
COORDINATES: protein motif:HMM:NF018352.2
COORDINATES: protein motif:HMM:NF024922.2
alpha-ketoglutarate-dependent dioxygenase AlkB
COORDINATES: protein motif:HMM:NF021385.2
COORDINATES: protein motif:HMM:NF040431.1
COORDINATES: protein motif:HMM:NF019247.2
COORDINATES: protein motif:HMM:NF027637.2
COORDINATES: protein motif:HMM:NF024874.2
COORDINATES: protein motif:HMM:NF024917.2
COORDINATES: protein motif:HMM:NF018624.2
COORDINATES: protein motif:HMM:NF007980.0
GO:0010945 - CoA pyrophosphatase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF013871.2
COORDINATES: protein motif:HMM:NF024988.2
GO:0050661 - NADP binding [Evidence IEA]
NAD(P)-binding domain-containing protein
COORDINATES: protein motif:HMM:NF017745.2
COORDINATES: protein motif:HMM:TIGR00654.1
PhzF family phenazine biosynthesis isomerase
COORDINATES: protein motif:HMM:NF012376.2
COORDINATES: protein motif:HMM:NF024871.2
COORDINATES: protein motif:HMM:NF012334.2
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: protein motif:HMM:NF013777.2
COORDINATES: protein motif:HMM:TIGR00589.1
GO:0003908 - methylated-DNA-[protein]-cysteine S-methyltransferase activity [Evidence IEA]
methylated-DNA--[protein]-cysteine S-methyltransferase
internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:TIGR01250.1
COORDINATES: protein motif:HMM:NF015048.2
COORDINATES: protein motif:HMM:TIGR02453.1
COORDINATES: protein motif:HMM:NF015722.2
formylglycine-generating enzyme family protein
COORDINATES: protein motif:HMM:NF006058.0
GO:0008838 - diaminopropionate ammonia-lyase activity [Evidence IEA]; GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF017819.2
COORDINATES: protein motif:HMM:NF014015.2
COORDINATES: similar to AA sequence:RefSeq:WP_008568724.1
GO:0004362 - glutathione-disulfide reductase (NADPH) activity [Evidence IEA]
GO:0045454 - cell redox homeostasis [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01358.1
GO:0003849 - 3-deoxy-7-phosphoheptulonate synthase activity [Evidence IEA]
3-deoxy-7-phosphoheptulonate synthase class II
COORDINATES: protein motif:HMM:NF010588.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0003952 - NAD+ synthase (glutamine-hydrolyzing) activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00435.1
GO:0004817 - cysteine-tRNA ligase activity [Evidence IEA]
GO:0006423 - cysteinyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF003717.0
GO:0015935 - small ribosomal subunit [Evidence IEA]
COORDINATES: protein motif:HMM:NF019974.2
nitrate- and nitrite sensing domain-containing protein
COORDINATES: protein motif:HMM:NF015927.2
COORDINATES: protein motif:HMM:NF024758.2
COORDINATES: similar to AA sequence:RefSeq:WP_020044742.1
GO:0009055 - electron transfer activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013851.2
BolA/IbaG family iron-sulfur metabolism protein
COORDINATES: protein motif:HMM:NF002290.1
GO:0004642 - phosphoribosylformylglycinamidine synthase activity [Evidence IEA]
GO:0006189 - 'de novo' IMP biosynthetic process [Evidence IEA]
phosphoribosylformylglycinamidine synthase subunit PurL
COORDINATES: protein motif:HMM:TIGR01737.1
phosphoribosylformylglycinamidine synthase subunit PurQ
COORDINATES: similar to AA sequence:RefSeq:WP_002884541.1
phosphoribosylformylglycinamidine synthase subunit PurS
COORDINATES: similar to AA sequence:RefSeq:WP_020092484.1
GO:0004639 - phosphoribosylaminoimidazolesuccinocarboxamide synthase activity [Evidence IEA]
phosphoribosylaminoimidazolesuccinocarboxamide synthase
COORDINATES: protein motif:HMM:NF018993.2
COORDINATES: similar to AA sequence:RefSeq:WP_016476317.1
GO:0004018 - N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005123739.1
molybdenum cofactor biosynthesis protein B
COORDINATES: protein motif:HMM:NF013618.2
lytic transglycosylase domain-containing protein
COORDINATES: protein motif:HMM:TIGR00758.1
COORDINATES: protein motif:HMM:TIGR01297.1
cation diffusion facilitator family transporter
COORDINATES: protein motif:HMM:NF013661.2
GO:0008745 - N-acetylmuramoyl-L-alanine amidase activity [Evidence IEA]
GO:0009253 - peptidoglycan catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF020459.2
COORDINATES: protein motif:HMM:NF024771.2
COORDINATES: protein motif:HMM:NF017495.2
COORDINATES: protein motif:HMM:NF017038.2
electron transfer flavoprotein-ubiquinone oxidoreductase
COORDINATES: protein motif:HMM:NF024821.2
COORDINATES: protein motif:HMM:NF011202.0
GO:0050515 - 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity [Evidence IEA]
4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase
COORDINATES: protein motif:HMM:NF018010.2
COORDINATES: protein motif:HMM:NF017857.2
COORDINATES: similar to AA sequence:RefSeq:WP_000091118.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0000156 - phosphorelay response regulator activity [Evidence IEA]
GO:0006796 - phosphate-containing compound metabolic process [Evidence IEA]; GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
phosphate regulon transcriptional regulator PhoB
COORDINATES: protein motif:HMM:NF010933.0
GO:0019134 - glucosamine-1-phosphate N-acetyltransferase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0003977 - UDP-N-acetylglucosamine diphosphorylase activity [Evidence IEA]
GO:0000902 - cell morphogenesis [Evidence IEA]; GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]; GO:0006048 - UDP-N-acetylglucosamine biosynthetic process [Evidence IEA]
bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU
COORDINATES: protein motif:HMM:NF001484.0
GO:0004360 - glutamine-fructose-6-phosphate transaminase (isomerizing) activity [Evidence IEA]
GO:0006040 - amino sugar metabolic process [Evidence IEA]; GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
glutamine--fructose-6-phosphate transaminase (isomerizing)
COORDINATES: protein motif:HMM:NF009558.0
acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase family protein
COORDINATES: protein motif:HMM:NF012706.2
COORDINATES: similar to AA sequence:RefSeq:WP_020045414.1
COORDINATES: protein motif:HMM:NF008453.0
GO:0015833 - peptide transport [Evidence IEA]
dipeptide ABC transporter ATP-binding protein
COORDINATES: protein motif:HMM:NF005559.1
TadE/TadG family type IV pilus assembly protein
COORDINATES: protein motif:HMM:NF009554.0
GO:0004736 - pyruvate carboxylase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014448.2
molybdenum cofactor biosynthesis protein MoaE
COORDINATES: protein motif:HMM:TIGR01682.1
molybdopterin converting factor subunit 1
COORDINATES: protein motif:HMM:TIGR00560.1
GO:0008444 - CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity [Evidence IEA]
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_020045260.1
GO:0009381 - excinuclease ABC activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00526.1
GO:0004150 - dihydroneopterin aldolase activity [Evidence IEA]
GO:0006760 - folic acid-containing compound metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00367.1
GO:0098662 - inorganic cation transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF016211.2
COORDINATES: protein motif:HMM:TIGR02817.1
zinc-binding alcohol dehydrogenase family protein
COORDINATES: protein motif:HMM:NF024376.2
PhnD/SsuA/transferrin family substrate-binding protein
COORDINATES: protein motif:HMM:TIGR04508.1
COORDINATES: protein motif:HMM:NF018242.2
GO:0008616 - queuosine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF022586.2
COORDINATES: protein motif:HMM:NF025143.2
COORDINATES: protein motif:HMM:NF012311.2
COORDINATES: protein motif:HMM:TIGR00147.1
diacylglycerol kinase family lipid kinase
prolyl oligopeptidase family serine peptidase
COORDINATES: protein motif:HMM:NF008354.0
GO:0008081 - phosphoric diester hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00712.1
GO:0015169 - glycerol-3-phosphate transmembrane transporter activity [Evidence IEA]
GO:0015794 - glycerol-3-phosphate transmembrane transport [Evidence IEA]
sulfotransferase domain-containing protein
COORDINATES: protein motif:HMM:NF018688.2
COORDINATES: protein motif:HMM:NF015724.2
COORDINATES: protein motif:HMM:NF022082.2
COORDINATES: protein motif:HMM:NF014669.2
COORDINATES: protein motif:HMM:NF017128.2
COORDINATES: protein motif:HMM:NF037870.2
COORDINATES: protein motif:HMM:NF019128.2
COORDINATES: protein motif:HMM:NF022795.2
COORDINATES: protein motif:HMM:NF012321.2
COORDINATES: protein motif:HMM:NF033770.1
COORDINATES: similar to AA sequence:RefSeq:WP_018251197.1
PAS domain-containing methyl-accepting chemotaxis protein
COORDINATES: protein motif:HMM:NF022750.2
COORDINATES: protein motif:HMM:NF004349.1
GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004832 - valine-tRNA ligase activity [Evidence IEA]
GO:0006438 - valyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF022155.2
COORDINATES: protein motif:HMM:TIGR01844.1
COORDINATES: protein motif:HMM:NF013315.2
protein-L-isoaspartate O-methyltransferase
COORDINATES: protein motif:HMM:NF002018.0
GO:0008124 - 4-alpha-hydroxytetrahydrobiopterin dehydratase activity [Evidence IEA]
GO:0006729 - tetrahydrobiopterin biosynthetic process [Evidence IEA]
4a-hydroxytetrahydrobiopterin dehydratase
COORDINATES: protein motif:HMM:NF012571.2
GO:0004505 - phenylalanine 4-monooxygenase activity [Evidence IEA]
GO:0006559 - L-phenylalanine catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008529019.1
COORDINATES: protein motif:HMM:NF015325.2
COORDINATES: protein motif:HMM:NF018449.2
GGDEF domain-containing phosphodiesterase
COORDINATES: protein motif:HMM:NF013586.2
COORDINATES: protein motif:HMM:NF024880.2
COORDINATES: protein motif:HMM:NF013927.2
COORDINATES: protein motif:HMM:NF020123.2
COORDINATES: protein motif:HMM:NF015758.2
nucleoside triphosphate pyrophosphohydrolase family protein
COORDINATES: protein motif:HMM:NF014608.2
GO:0016831 - carboxy-lyase activity [Evidence IEA]; GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
GO:0019752 - carboxylic acid metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF019474.2
COORDINATES: protein motif:HMM:TIGR01480.1
GO:0005507 - copper ion binding [Evidence IEA]; GO:0005375 - copper ion transmembrane transporter activity [Evidence IEA]
GO:0006825 - copper ion transport [Evidence IEA]
copper resistance system multicopper oxidase
COORDINATES: protein motif:HMM:NF017119.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF002994.0
COORDINATES: protein motif:HMM:NF013460.2
COORDINATES: protein motif:HMM:NF015859.2
COORDINATES: protein motif:HMM:TIGR03036.1
GO:0004833 - tryptophan 2,3-dioxygenase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013989.2
GO:0008703 - 5-amino-6-(5-phosphoribosylamino)uracil reductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024232.2
COORDINATES: protein motif:HMM:NF014132.2
SCP2 sterol-binding domain-containing protein
COORDINATES: protein motif:HMM:NF013567.2
COORDINATES: protein motif:HMM:NF019896.2
D-Ala-D-Ala carboxypeptidase family metallohydrolase
COORDINATES: protein motif:HMM:NF018949.2
COORDINATES: protein motif:HMM:NF012630.2
GO:0007154 - cell communication [Evidence IEA]
COORDINATES: protein motif:HMM:NF015140.2
COORDINATES: similar to AA sequence:RefSeq:WP_000974627.1
COORDINATES: protein motif:HMM:NF024578.2
COORDINATES: protein motif:HMM:NF015438.2
MOSC N-terminal beta barrel domain-containing protein
COORDINATES: protein motif:HMM:NF014068.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF022426.2
COORDINATES: protein motif:HMM:NF015682.2
COORDINATES: protein motif:HMM:NF017206.2
COORDINATES: protein motif:HMM:NF014672.2
GO:0008237 - metallopeptidase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO:0070573 - metallodipeptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013304.2
COORDINATES: protein motif:HMM:NF017470.2
COORDINATES: protein motif:HMM:NF016623.2
divergent polysaccharide deacetylase family protein
COORDINATES: protein motif:HMM:TIGR01055.1
COORDINATES: protein motif:HMM:NF013123.2
DPP IV N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF012698.2
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011001079.1
GO:0004634 - phosphopyruvate hydratase activity [Evidence IEA]
GO:0006096 - glycolytic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF003792.0
GO:0003883 - CTP synthase activity [Evidence IEA]
GO:0006241 - CTP biosynthetic process [Evidence IEA]; GO:0006221 - pyrimidine nucleotide biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00810.1
COORDINATES: protein motif:HMM:NF012349.2
GO:0004807 - triose-phosphate isomerase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF025010.2
COORDINATES: protein motif:HMM:TIGR00564.1
GO:0004049 - anthranilate synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003121539.1
COORDINATES: protein motif:HMM:NF001095.0
COORDINATES: protein motif:HMM:NF024816.2
COORDINATES: similar to AA sequence:RefSeq:WP_007702574.1
GO:0004550 - nucleoside diphosphate kinase activity [Evidence IEA]
GO:0006165 - nucleoside diphosphate phosphorylation [Evidence IEA]
ABC-F family ATP-binding cassette domain-containing protein
COORDINATES: protein motif:HMM:NF004347.0
GO:0003677 - DNA binding [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF002077.0
GO:0030145 - manganese ion binding [Evidence IEA]; GO:0070006 - metalloaminopeptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF016348.2
GO:0061024 - membrane organization [Evidence IEA]; GO:0010033 - response to organic substance [Evidence IEA]
COORDINATES: protein motif:HMM:NF024545.2
COORDINATES: protein motif:HMM:NF003699.0
GO:0050570 - 4-hydroxythreonine-4-phosphate dehydrogenase activity [Evidence IEA]; GO:0051287 - NAD binding [Evidence IEA]
GO:0042823 - pyridoxal phosphate biosynthetic process [Evidence IEA]
4-hydroxythreonine-4-phosphate dehydrogenase PdxA
COORDINATES: protein motif:HMM:TIGR00755.1
GO:0000179 - rRNA (adenine-N6,N6-)-dimethyltransferase activity [Evidence IEA]
16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA
COORDINATES: protein motif:HMM:TIGR01413.1
COORDINATES: similar to AA sequence:RefSeq:WP_008034636.1
GO:0004385 - guanylate kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00255.1
COORDINATES: protein motif:HMM:NF024676.2
COORDINATES: protein motif:HMM:TIGR01136.1
GO:0004124 - cysteine synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014656.2
GO:0008932 - lytic endotransglycosylase activity [Evidence IEA]
GO:0071555 - cell wall organization [Evidence IEA]; GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF004970.0
GO:0004315 - 3-oxoacyl-[acyl-carrier-protein] synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012178849.1
COORDINATES: similar to AA sequence:RefSeq:WP_020044906.1
GO:0004316 - 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity [Evidence IEA]
3-oxoacyl-[acyl-carrier-protein] reductase
COORDINATES: protein motif:HMM:TIGR00128.1
GO:0004314 - [acyl-carrier-protein] S-malonyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007403527.1
COORDINATES: similar to AA sequence:RefSeq:WP_017929480.1
COORDINATES: protein motif:HMM:TIGR00158.1
COORDINATES: protein motif:HMM:NF015377.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]
cysteine peptidase family C39 domain-containing protein
COORDINATES: protein motif:HMM:NF024946.2
COORDINATES: protein motif:HMM:NF025484.2
COORDINATES: protein motif:HMM:NF006606.0
COORDINATES: protein motif:HMM:TIGR00056.1
COORDINATES: protein motif:HMM:TIGR00416.1
COORDINATES: protein motif:HMM:NF014704.2
COORDINATES: protein motif:HMM:TIGR01134.1
GO:0004044 - amidophosphoribosyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024675.2
COORDINATES: protein motif:HMM:NF013046.2
COORDINATES: protein motif:HMM:NF016064.2
COORDINATES: protein motif:HMM:TIGR03594.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA]; GO:0043022 - ribosome binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF024753.2
PQQ-binding-like beta-propeller repeat protein
COORDINATES: protein motif:HMM:NF021492.2
COORDINATES: protein motif:HMM:NF015527.2
GO:0008146 - sulfotransferase activity [Evidence IEA]
sulfotransferase family 2 domain-containing protein
COORDINATES: protein motif:HMM:NF000848.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0003922 - GMP synthase (glutamine-hydrolyzing) activity [Evidence IEA]; GO:0016462 - pyrophosphatase activity [Evidence IEA]
GO:0006177 - GMP biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013362.2
RsmB/NOP family class I SAM-dependent RNA methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_016291787.1
GO:0003938 - IMP dehydrogenase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013665.2
COORDINATES: protein motif:HMM:TIGR00518.1
GO:0000286 - alanine dehydrogenase activity [Evidence IEA]
GO:0006522 - alanine metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF015509.2
COORDINATES: protein motif:HMM:TIGR04282.1
GO:0016740 - transferase activity [Evidence IEA]
TIGR04282 family arsenosugar biosynthesis glycosyltransferase
COORDINATES: protein motif:HMM:NF012745.2
COORDINATES: protein motif:HMM:NF000594.1
GO:0003723 - RNA binding [Evidence IEA]; GO:0004523 - RNA-DNA hybrid ribonuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020045114.1
COORDINATES: protein motif:HMM:NF021606.2
COORDINATES: protein motif:HMM:NF014841.2
COORDINATES: similar to AA sequence:RefSeq:WP_010439041.1
COORDINATES: similar to AA sequence:RefSeq:WP_003168904.1
COORDINATES: protein motif:HMM:NF006544.0
COORDINATES: protein motif:HMM:TIGR02204.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
ABC transporter transmembrane domain-containing protein
COORDINATES: protein motif:HMM:NF001809.0
COORDINATES: protein motif:HMM:NF018972.2
COORDINATES: similar to AA sequence:RefSeq:WP_015316619.1
COORDINATES: protein motif:HMM:NF018413.2
COORDINATES: protein motif:HMM:TIGR02824.1
COORDINATES: protein motif:HMM:NF014044.2
COORDINATES: similar to AA sequence:RefSeq:WP_012177066.1
COORDINATES: protein motif:HMM:NF004886.0
GO:0004743 - pyruvate kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014213.2
COORDINATES: protein motif:HMM:NF016873.2
COORDINATES: protein motif:HMM:NF018545.2
COORDINATES: similar to AA sequence:RefSeq:WP_012317149.1
COORDINATES: protein motif:HMM:NF027579.2
COORDINATES: protein motif:HMM:NF012760.2
GO:0016742 - hydroxymethyl-, formyl- and related transferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013959.2
COORDINATES: protein motif:HMM:NF006942.0
GO:0008746 - NAD(P)+ transhydrogenase activity [Evidence IEA]
Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha
COORDINATES: protein motif:HMM:NF024179.2
COORDINATES: protein motif:HMM:NF014307.2
NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta
COORDINATES: protein motif:HMM:NF016763.2
COORDINATES: protein motif:HMM:TIGR00257.1
COORDINATES: protein motif:HMM:NF023540.2
putative metalloprotease CJM1_0395 family protein
COORDINATES: protein motif:HMM:NF025173.2
COORDINATES: protein motif:HMM:TIGR02937.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: protein motif:HMM:NF023580.2
COORDINATES: protein motif:HMM:NF024966.2
COORDINATES: protein motif:HMM:NF013053.2
COORDINATES: protein motif:HMM:NF014566.2
CPBP family intramembrane metalloprotease
COORDINATES: protein motif:HMM:NF014794.2
2-oxoacid:ferredoxin oxidoreductase subunit beta
COORDINATES: protein motif:HMM:TIGR03710.1
2-oxoacid:acceptor oxidoreductase subunit alpha
COORDINATES: protein motif:HMM:NF017501.2
COORDINATES: protein motif:HMM:TIGR01683.1
COORDINATES: protein motif:HMM:NF003806.0
GO:0003855 - 3-dehydroquinate dehydratase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00531.1
acetyl-CoA carboxylase biotin carboxyl carrier protein
GO:0003989 - acetyl-CoA carboxylase activity [Evidence IEA]; GO:0004075 - biotin carboxylase activity [Evidence IEA]
acetyl-CoA carboxylase biotin carboxylase subunit
COORDINATES: protein motif:HMM:TIGR00667.1
GO:0008914 - leucyltransferase activity [Evidence IEA]
leucyl/phenylalanyl-tRNA--protein transferase
COORDINATES: protein motif:HMM:NF021444.2
COORDINATES: protein motif:HMM:TIGR04430.1
GO:0015914 - phospholipid transport [Evidence IEA]
outer membrane lipid asymmetry maintenance protein MlaD
COORDINATES: protein motif:HMM:NF006040.0
GO:0010257 - NADH dehydrogenase complex assembly [Evidence IEA]
NADH:ubiquinone oxidoreductase subunit NDUFA12
COORDINATES: protein motif:HMM:NF005736.0
vitamin B12-dependent ribonucleotide reductase
bifunctional diguanylate cyclase/phosphodiesterase
COORDINATES: protein motif:HMM:NF012470.2
GO:0016791 - phosphatase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012270584.1
GO:0008479 - queuine tRNA-ribosyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF001140.0
GO:0016853 - isomerase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]
tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA
COORDINATES: similar to AA sequence:RefSeq:WP_013652966.1
COORDINATES: protein motif:HMM:TIGR01510.1
GO:0004595 - pantetheine-phosphate adenylyltransferase activity [Evidence IEA]
GO:0015937 - coenzyme A biosynthetic process [Evidence IEA]
pantetheine-phosphate adenylyltransferase
COORDINATES: protein motif:HMM:TIGR01063.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]; GO:0003918 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity [Evidence IEA]
GO:0006259 - DNA metabolic process [Evidence IEA]; GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016658919.1
COORDINATES: similar to AA sequence:RefSeq:WP_016151350.1
COORDINATES: protein motif:HMM:NF019403.2
heparan-alpha-glucosaminide N-acetyltransferase domain-containing protein
COORDINATES: protein motif:HMM:NF025119.2
COORDINATES: protein motif:HMM:NF004972.0
GO:0003697 - single-stranded DNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016099277.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF003739.0
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]
methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO
COORDINATES: protein motif:HMM:NF012705.2
phytoene/squalene synthase family protein
COORDINATES: protein motif:HMM:NF017945.2
COORDINATES: protein motif:HMM:NF024628.2
COORDINATES: protein motif:HMM:NF016326.2
COORDINATES: protein motif:HMM:TIGR00966.2
GO:0031522 - cell envelope Sec protein transport complex [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01129.1
COORDINATES: similar to AA sequence:RefSeq:WP_004632835.1
COORDINATES: similar to AA sequence:RefSeq:WP_019977368.1
COORDINATES: similar to AA sequence:RefSeq:WP_020045096.1
GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004628765.1
COORDINATES: protein motif:HMM:NF015515.2
COORDINATES: protein motif:HMM:NF025214.2
COORDINATES: protein motif:HMM:NF019019.2
COORDINATES: protein motif:HMM:NF012744.2
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:TIGR02414.1
GO:0004177 - aminopeptidase activity [Evidence IEA]; GO:0008237 - metallopeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006199474.1
COORDINATES: protein motif:HMM:NF013736.2
COORDINATES: similar to AA sequence:RefSeq:WP_016448881.1
GO:0006950 - response to stress [Evidence IEA]; GO:0006412 - translation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02067.1
GO:0004401 - histidinol-phosphatase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF023568.2
COORDINATES: protein motif:HMM:NF012593.2
dicarboxylate/amino acid:cation symporter
COORDINATES: protein motif:HMM:NF025167.2
GO:0051139 - metal cation:proton antiporter activity [Evidence IEA]
CusA/CzcA family heavy metal efflux RND transporter
COORDINATES: protein motif:HMM:NF014664.2
GO:0051920 - peroxiredoxin activity [Evidence IEA]
carboxymuconolactone decarboxylase family protein
COORDINATES: protein motif:HMM:NF019042.2
COORDINATES: protein motif:HMM:NF040043.1
COORDINATES: protein motif:HMM:NF015297.2
COORDINATES: protein motif:HMM:NF013355.2
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0017150 - tRNA dihydrouridine synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01141.1
GO:0004400 - histidinol-phosphate transaminase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF020416.2
acyl-CoA thioester hydrolase/BAAT C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF006122.0
GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02309.1
4-hydroxyphenylacetate 3-monooxygenase, oxygenase component
COORDINATES: protein motif:HMM:NF019366.2
COORDINATES: protein motif:HMM:NF009902.0
class III extradiol dioxygenase family protein
COORDINATES: protein motif:HMM:TIGR02486.1
COORDINATES: protein motif:HMM:NF016032.2
GO:0042398 - cellular modified amino acid biosynthetic process [Evidence IEA]
glutamate-cysteine ligase family protein
COORDINATES: protein motif:HMM:NF013539.2
COORDINATES: protein motif:HMM:NF024091.2
COORDINATES: protein motif:HMM:NF027890.2
PstS family phosphate ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:TIGR02138.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
GO:0015415 - ATPase-coupled phosphate ion transmembrane transporter activity [Evidence IEA]
phosphate ABC transporter permease subunit PstC
COORDINATES: protein motif:HMM:TIGR00974.1
COORDINATES: similar to AA sequence:RefSeq:WP_004810563.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0009898 - cytoplasmic side of plasma membrane [Evidence IEA]
GO:0005524 - ATP binding [Evidence IEA]; GO:0015415 - ATPase-coupled phosphate ion transmembrane transporter activity [Evidence IEA]
phosphate ABC transporter ATP-binding protein PstB
COORDINATES: protein motif:HMM:TIGR02135.1
GO:0051049 - regulation of transport [Evidence IEA]
phosphate signaling complex protein PhoU
COORDINATES: protein motif:HMM:NF006006.0
COORDINATES: protein motif:HMM:NF004326.0
GO:0046523 - S-methyl-5-thioribose-1-phosphate isomerase activity [Evidence IEA]
GO:0019509 - L-methionine salvage from methylthioadenosine [Evidence IEA]
S-methyl-5-thioribose-1-phosphate isomerase
COORDINATES: protein motif:HMM:NF014678.2
COORDINATES: protein motif:HMM:NF012534.2
COORDINATES: protein motif:HMM:NF014135.2
COORDINATES: protein motif:HMM:NF013738.2
iron-sulfur cluster assembly scaffold protein
COORDINATES: protein motif:HMM:NF018305.2
COORDINATES: protein motif:HMM:NF013866.2
COORDINATES: protein motif:HMM:TIGR00066.1
COORDINATES: protein motif:HMM:NF019370.2
COORDINATES: protein motif:HMM:NF013245.2
COORDINATES: protein motif:HMM:NF002325.0
COORDINATES: protein motif:HMM:NF001986.0
GO:0004585 - ornithine carbamoyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013589.2
COORDINATES: protein motif:HMM:NF004815.0
COORDINATES: protein motif:HMM:NF013811.2
COORDINATES: protein motif:HMM:NF033196.2
COORDINATES: protein motif:HMM:NF004017.0
COORDINATES: protein motif:HMM:NF008864.0
GO:1990610 - acetolactate synthase regulator activity [Evidence IEA]
GO:0009082 - branched-chain amino acid biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF006581.0
GO:0003984 - acetolactate synthase activity [Evidence IEA]; GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00174.1
GO:0052381 - tRNA dimethylallyltransferase activity [Evidence IEA]
tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA
COORDINATES: protein motif:HMM:TIGR00338.1
GO:0036424 - L-phosphoserine phosphatase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF019607.2
COORDINATES: similar to AA sequence:RefSeq:WP_020054879.1
GO:0015036 - disulfide oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02784.1
GO:0000724 - double-strand break repair via homologous recombination [Evidence IEA]
double-strand break repair helicase AddA
COORDINATES: protein motif:HMM:TIGR02786.1
COORDINATES: protein motif:HMM:NF013775.2
COORDINATES: protein motif:HMM:TIGR00150.1
GO:0016887 - ATP hydrolysis activity [Evidence IEA]
tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE
COORDINATES: protein motif:HMM:NF024267.2
COORDINATES: similar to AA sequence:RefSeq:WP_018054575.1
GO:0004013 - adenosylhomocysteinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011000311.1
COORDINATES: protein motif:HMM:NF015567.2
COORDINATES: protein motif:HMM:NF015620.2
COORDINATES: protein motif:HMM:NF019118.2
HPr kinase/phosphatase C-terminal domain-containing protein
stimulus-sensing domain-containing protein
COORDINATES: protein motif:HMM:NF006822.0
GO:0004612 - phosphoenolpyruvate carboxykinase (ATP) activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017978218.1
COORDINATES: protein motif:HMM:NF014038.2
COORDINATES: protein motif:HMM:NF022779.2
COORDINATES: protein motif:HMM:NF015944.2
COORDINATES: protein motif:HMM:NF017021.2
COORDINATES: protein motif:HMM:NF013740.2
COORDINATES: protein motif:HMM:NF004283.0
carboxyl transferase domain-containing protein
COORDINATES: protein motif:HMM:NF012451.2
COORDINATES: protein motif:HMM:TIGR01650.1
GO:0051116 - cobaltochelatase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01651.1
COORDINATES: protein motif:HMM:NF019619.2
COORDINATES: protein motif:HMM:NF016141.2
GlsB/YeaQ/YmgE family stress response membrane protein
COORDINATES: protein motif:HMM:TIGR03558.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00368.1
YifB family Mg chelatase-like AAA ATPase
COORDINATES: protein motif:HMM:NF015402.2
COORDINATES: protein motif:HMM:NF024923.2
COORDINATES: protein motif:HMM:TIGR01843.1
GO:0030253 - protein secretion by the type I secretion system [Evidence IEA]
HlyD family type I secretion periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_008036077.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004363 - glutathione synthase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF024762.2
transglutaminase-like domain-containing protein
COORDINATES: protein motif:HMM:NF014119.2
GO:0004518 - nuclease activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00096.1
GO:0008649 - rRNA methyltransferase activity [Evidence IEA]; GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IEA]
GO:0000451 - rRNA 2'-O-methylation [Evidence IEA]
16S rRNA (cytidine(1402)-2'-O)-methyltransferase
COORDINATES: protein motif:HMM:NF024850.2
COORDINATES: protein motif:HMM:TIGR00539.1
COORDINATES: protein motif:HMM:TIGR00042.1
non-canonical purine NTP pyrophosphatase
COORDINATES: similar to AA sequence:RefSeq:WP_018055047.1
GO:0004549 - tRNA-specific ribonuclease activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00331.1
GO:0009408 - response to heat [Evidence IEA]
heat-inducible transcriptional repressor HrcA
COORDINATES: protein motif:HMM:NF010739.0
GO:0000774 - adenyl-nucleotide exchange factor activity [Evidence IEA]; GO:0051087 - chaperone binding [Evidence IEA]; GO:0042803 - protein homodimerization activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01932.1
COORDINATES: protein motif:HMM:NF033936.1
COORDINATES: protein motif:HMM:NF016221.2
COORDINATES: similar to AA sequence:RefSeq:WP_001737966.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF008035.0
GO:0006457 - protein folding [Evidence IEA]; GO:0009408 - response to heat [Evidence IEA]
COORDINATES: protein motif:HMM:NF022853.2
protein-disulfide reductase DsbD family protein
COORDINATES: protein motif:HMM:NF017390.2
COORDINATES: protein motif:HMM:NF015898.2
BlaI/MecI/CopY family transcriptional regulator
COORDINATES: protein motif:HMM:NF012711.2
class I adenylate-forming enzyme family protein
COORDINATES: protein motif:HMM:NF012935.2
COORDINATES: protein motif:HMM:NF017050.2
COORDINATES: protein motif:HMM:NF014893.2
COORDINATES: protein motif:HMM:NF012742.2
LacI family DNA-binding transcriptional regulator
COORDINATES: protein motif:HMM:NF014715.2
GO:0004340 - glucokinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01198.1
GO:0017057 - 6-phosphogluconolactonase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014800.2
COORDINATES: protein motif:HMM:NF013755.2
COORDINATES: protein motif:HMM:NF018537.2
LPS export ABC transporter periplasmic protein LptC
COORDINATES: protein motif:HMM:NF015901.2
COORDINATES: similar to AA sequence:RefSeq:WP_020044520.1
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]; GO:0009898 - cytoplasmic side of plasma membrane [Evidence IEA]
GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]; GO:0015221 - lipopolysaccharide transmembrane transporter activity [Evidence IEA]
LPS export ABC transporter ATP-binding protein
COORDINATES: protein motif:HMM:NF004596.0
COORDINATES: protein motif:HMM:TIGR00741.1
GO:0022626 - cytosolic ribosome [Evidence IEA]; GO:0005840 - ribosome [Evidence IEA]
GO:0045182 - translation regulator activity [Evidence IEA]
GO:0009386 - translational attenuation [Evidence IEA]
ribosome-associated translation inhibitor RaiA
COORDINATES: similar to AA sequence:RefSeq:WP_008035594.1
GO:0008982 - protein-N(PI)-phosphohistidine-sugar phosphotransferase activity [Evidence IEA]
GO:0009401 - phosphoenolpyruvate-dependent sugar phosphotransferase system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
PTS IIA-like nitrogen regulatory protein PtsN
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: protein motif:HMM:TIGR00553.1
GO:0046820 - 4-amino-4-deoxychorismate synthase activity [Evidence IEA]
GO:0009396 - folic acid-containing compound biosynthetic process [Evidence IEA]; GO:0008153 - para-aminobenzoic acid biosynthetic process [Evidence IEA]
aminodeoxychorismate synthase component I
COORDINATES: protein motif:HMM:NF014477.2
GO:0017013 - protein flavinylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF016121.2
COORDINATES: protein motif:HMM:NF001393.0
GO:0050380 - undecaprenyl-diphosphatase activity [Evidence IEA]
GO:0016311 - dephosphorylation [Evidence IEA]
cytochrome b/b6 domain-containing protein
COORDINATES: protein motif:HMM:NF013134.2
xanthine dehydrogenase family protein subunit M
COORDINATES: protein motif:HMM:TIGR03588.1
UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase
COORDINATES: protein motif:HMM:NF033855.1
tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD
COORDINATES: protein motif:HMM:NF039236.1
COORDINATES: protein motif:HMM:NF005695.0
GO:0018826 - methionine gamma-lyase activity [Evidence IEA]; GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
GO:0019346 - transsulfuration [Evidence IEA]
COORDINATES: protein motif:HMM:NF017820.2
COORDINATES: protein motif:HMM:NF013530.2
NAD-dependent epimerase/dehydratase family protein
COORDINATES: protein motif:HMM:NF002564.0
GO:0008783 - agmatinase activity [Evidence IEA]
GO:0008295 - spermidine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF016817.2
GO:0016788 - hydrolase activity, acting on ester bonds [Evidence IEA]
succinylglutamate desuccinylase/aspartoacylase family protein
COORDINATES: protein motif:HMM:NF033734.1
organoarsenical effux MFS transporter ArsJ
COORDINATES: protein motif:HMM:NF033735.1
GO:0051287 - NAD binding [Evidence IEA]; GO:0050661 - NADP binding [Evidence IEA]; GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]
GO:0006006 - glucose metabolic process [Evidence IEA]
ArsJ-associated glyceraldehyde-3-phosphate dehydrogenase
COORDINATES: protein motif:HMM:NF041052.1
COORDINATES: protein motif:HMM:NF017984.2
GO:0019104 - DNA N-glycosylase activity [Evidence IEA]
GO:0036297 - interstrand cross-link repair [Evidence IEA]
crosslink repair DNA glycosylase YcaQ family protein
COORDINATES: protein motif:HMM:TIGR01389.1
COORDINATES: protein motif:HMM:NF013109.2
hydrogen peroxide-inducible genes activator
COORDINATES: similar to AA sequence:RefSeq:WP_020043836.1
COORDINATES: protein motif:HMM:NF020419.2
nucleotidyl transferase AbiEii/AbiGii toxin family protein
COORDINATES: protein motif:HMM:NF040319.1
COORDINATES: protein motif:HMM:NF025107.2
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010939300.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF021065.2
HindIII family type II restriction endonuclease
COORDINATES: similar to AA sequence:RefSeq:WP_012553005.1
COORDINATES: protein motif:HMM:NF033563.0
COORDINATES: protein motif:HMM:NF024939.2
COORDINATES: protein motif:HMM:NF021451.2
COORDINATES: protein motif:HMM:NF020265.2
COORDINATES: protein motif:HMM:TIGR02217.1
COORDINATES: protein motif:HMM:NF040129.1
phage tail tape measure C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF039819.1
COORDINATES: protein motif:HMM:NF040424.1
COORDINATES: protein motif:HMM:NF015802.2
COORDINATES: protein motif:HMM:NF014921.2
COORDINATES: protein motif:HMM:NF023331.2
COORDINATES: protein motif:HMM:NF027117.2
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: protein motif:HMM:NF040389.1
COORDINATES: protein motif:HMM:NF016724.2
COORDINATES: similar to AA sequence:RefSeq:WP_012080596.1
COORDINATES: protein motif:HMM:NF012920.2
COORDINATES: protein motif:HMM:NF012774.2
COORDINATES: protein motif:HMM:NF024991.2
COORDINATES: protein motif:HMM:TIGR00497.1
GO:0015666 - restriction endodeoxyribonuclease activity [Evidence IEA]; GO:0009007 - site-specific DNA-methyltransferase (adenine-specific) activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]; GO:0009307 - DNA restriction-modification system [Evidence IEA]
type I restriction-modification system subunit M
GO:0006304 - DNA modification [Evidence IEA]
type I restriction endonuclease subunit R
COORDINATES: protein motif:HMM:NF024593.2
COORDINATES: similar to AA sequence:RefSeq:WP_011886369.1
COORDINATES: protein motif:HMM:NF019314.2
GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]; GO:0004673 - protein histidine kinase activity [Evidence IEA]
GO:0071555 - cell wall organization [Evidence IEA]; GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
LytS/YhcK type 5TM receptor domain-containing protein
COORDINATES: protein motif:HMM:NF013346.2
COORDINATES: protein motif:HMM:NF024873.2
COORDINATES: nucleotide motif:Rfam:14.4:RF00001
COORDINATES: nucleotide motif:Rfam:14.4:RF02541
COORDINATES: nucleotide motif:Rfam:14.4:RF00177
COORDINATES: protein motif:HMM:NF012780.2
COORDINATES: protein motif:HMM:NF019032.2
COORDINATES: protein motif:HMM:TIGR01087.1
GO:0008764 - UDP-N-acetylmuramoylalanine-D-glutamate ligase activity [Evidence IEA]
UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
COORDINATES: protein motif:HMM:NF017727.2
COORDINATES: protein motif:HMM:NF013254.2
COORDINATES: protein motif:HMM:TIGR00815.1
GO:0015116 - sulfate transmembrane transporter activity [Evidence IEA]
GO:0008272 - sulfate transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF011708.0
GO:0016855 - racemase and epimerase activity, acting on amino acids and derivatives [Evidence IEA]
COORDINATES: protein motif:HMM:NF018038.2
COORDINATES: protein motif:HMM:NF013473.2
COORDINATES: protein motif:HMM:NF012697.2
COORDINATES: similar to AA sequence:RefSeq:WP_005133237.1
GO:0003988 - acetyl-CoA C-acyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF008727.0
GO:0070403 - NAD+ binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
fatty acid oxidation complex subunit alpha FadB
COORDINATES: protein motif:HMM:NF012927.2
NADPH-dependent 2,4-dienoyl-CoA reductase
NAD-dependent succinate-semialdehyde dehydrogenase
COORDINATES: protein motif:HMM:TIGR03549.1
OsmC domain/YcaO domain-containing protein
COORDINATES: protein motif:HMM:TIGR03140.1
GO:0016668 - oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor [Evidence IEA]
GO:0009398 - FMN biosynthetic process [Evidence IEA]; GO:0006805 - xenobiotic metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003858764.1
GO:0102039 - NADH-dependent peroxiredoxin activity [Evidence IEA]
GO:0006979 - response to oxidative stress [Evidence IEA]
COORDINATES: protein motif:HMM:NF039867.1
DUF5801 repeats-in-toxin domain-containing protein
COORDINATES: protein motif:HMM:NF015821.2
GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF021653.2
COORDINATES: protein motif:HMM:TIGR00172.1
COORDINATES: similar to AA sequence:RefSeq:WP_003130554.1
GO:0003743 - translation initiation factor activity [Evidence IEA]
GO:0006413 - translational initiation [Evidence IEA]
COORDINATES: protein motif:HMM:NF002769.0
COORDINATES: protein motif:HMM:NF013013.2
GO:0004399 - histidinol dehydrogenase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00070.1
GO:0003879 - ATP phosphoribosyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF022612.2
COORDINATES: protein motif:HMM:NF006873.0
GO:0008760 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase activity [Evidence IEA]
UDP-N-acetylglucosamine 1-carboxyvinyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_003823864.1
GO:0008829 - dCTP deaminase activity [Evidence IEA]
GO:0009394 - 2'-deoxyribonucleotide metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF018748.2
COORDINATES: protein motif:HMM:TIGR02451.1
COORDINATES: protein motif:HMM:NF024317.2
COORDINATES: protein motif:HMM:NF018770.2
COORDINATES: protein motif:HMM:NF016150.2
COORDINATES: protein motif:HMM:NF018599.2
COORDINATES: protein motif:HMM:NF007831.0
COORDINATES: protein motif:HMM:NF024297.2
COORDINATES: protein motif:HMM:NF007922.1
GO:0051287 - NAD binding [Evidence IEA]; GO:0043115 - precorrin-2 dehydrogenase activity [Evidence IEA]; GO:0051266 - sirohydrochlorin ferrochelatase activity [Evidence IEA]; GO:0004851 - uroporphyrin-III C-methyltransferase activity [Evidence IEA]
GO:0019354 - siroheme biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF022464.2
COORDINATES: protein motif:HMM:NF013259.2
COORDINATES: protein motif:HMM:NF017849.2
COORDINATES: protein motif:HMM:NF002537.0
GO:0003824 - catalytic activity [Evidence IEA]; GO:0004604 - phosphoadenylyl-sulfate reductase (thioredoxin) activity [Evidence IEA]
GO:0019379 - sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin) [Evidence IEA]
COORDINATES: protein motif:HMM:NF008352.0
COORDINATES: protein motif:HMM:NF006596.0
COORDINATES: protein motif:HMM:NF017868.2
gamma-glutamylcyclotransferase family protein
COORDINATES: protein motif:HMM:NF014375.2
Presence of a B(12) (cobalamin)-binding domain implies dependence on cobalamin itself, in one of its several forms, or in some unusual lineages, dependence on a cobalamin-like analog.; Presence of a B(12) (cobalamin)-binding domain implies dependence on cobalamin itself, in one of its several forms, or in some unusual lineages, dependence on a cobalamin-like analog.; Presence of a B(12) (cobalamin)-binding domain implies dependence on cobalamin itself, in one of its several forms, or in some unusual lineages, dependence on a cobalamin-like analog; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF015747.2
COORDINATES: protein motif:HMM:NF017072.2
COORDINATES: protein motif:HMM:NF027964.2
COORDINATES: protein motif:HMM:NF025069.2
COORDINATES: protein motif:HMM:NF007790.0
solute:sodium symporter family transporter
GO:0005524 - ATP binding [Evidence IEA]; GO:0004340 - glucokinase activity [Evidence IEA]; GO:0005536 - glucose binding [Evidence IEA]
GO:0051156 - glucose 6-phosphate metabolic process [Evidence IEA]; GO:0006096 - glycolytic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF024846.2
COORDINATES: protein motif:HMM:NF024857.2
GO:0009975 - cyclase activity [Evidence IEA]
GO:0009966 - regulation of signal transduction [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00872.1
GO:0004616 - phosphogluconate dehydrogenase (decarboxylating) activity [Evidence IEA]
decarboxylating 6-phosphogluconate dehydrogenase
COORDINATES: protein motif:HMM:TIGR00915.1
COORDINATES: protein motif:HMM:NF009763.0
GO:0000334 - 3-hydroxyanthranilate 3,4-dioxygenase activity [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020205770.1
COORDINATES: similar to AA sequence:RefSeq:WP_011489338.1
GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]
2-hydroxymuconic semialdehyde dehydrogenase
COORDINATES: protein motif:HMM:NF015197.2
GO:0015173 - aromatic amino acid transmembrane transporter activity [Evidence IEA]
GO:0015801 - aromatic amino acid transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF006097.0
cystathionine gamma-synthase family protein
COORDINATES: protein motif:HMM:NF006551.0
GO:0016747 - acyltransferase activity, transferring groups other than amino-acyl groups [Evidence IEA]
GO:0019619 - 3,4-dihydroxybenzoate catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02429.1
COORDINATES: protein motif:HMM:TIGR03375.1
COORDINATES: protein motif:HMM:NF014385.2
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01262.1
GO:0016034 - maleylacetoacetate isomerase activity [Evidence IEA]
GO:0006559 - L-phenylalanine catabolic process [Evidence IEA]; GO:0006572 - tyrosine catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013756.2
COORDINATES: protein motif:HMM:NF024629.2
COORDINATES: protein motif:HMM:NF001933.0
GO:0008718 - D-amino-acid dehydrogenase activity [Evidence IEA]
GO:0019478 - D-amino acid catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF024877.2
reductive dehalogenase domain-containing protein
COORDINATES: protein motif:HMM:NF024899.2
S1-like domain-containing RNA-binding protein
COORDINATES: protein motif:HMM:NF015995.2
glycine betaine ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF039614.1
COORDINATES: protein motif:HMM:NF005762.0
COORDINATES: protein motif:HMM:NF013206.2
COORDINATES: protein motif:HMM:TIGR01879.1
GO:0016813 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines [Evidence IEA]
hydantoinase/carbamoylase family amidase
COORDINATES: protein motif:HMM:NF015563.2
COORDINATES: protein motif:HMM:NF018448.2
threonine/serine exporter family protein
COORDINATES: protein motif:HMM:NF013015.2
COORDINATES: protein motif:HMM:TIGR00550.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0008987 - quinolinate synthetase A activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00078.1
GO:0004514 - nicotinate-nucleotide diphosphorylase (carboxylating) activity [Evidence IEA]
GO:0019363 - pyridine nucleotide biosynthetic process [Evidence IEA]
carboxylating nicotinate-nucleotide diphosphorylase
COORDINATES: protein motif:HMM:NF008107.0
COORDINATES: protein motif:HMM:NF039999.1
COORDINATES: protein motif:HMM:NF004231.0
GO:0010181 - FMN binding [Evidence IEA]; GO:0004733 - pyridoxamine-phosphate oxidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013705.2
DnaJ C-terminal domain-containing protein
COORDINATES: protein motif:HMM:TIGR00765.1
YihY/virulence factor BrkB family protein
COORDINATES: protein motif:HMM:NF006019.0
GO:0004318 - enoyl-[acyl-carrier-protein] reductase (NADH) activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00033.1
GO:0004107 - chorismate synthase activity [Evidence IEA]
GO:0009073 - aromatic amino acid family biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00479.1
GO:0008649 - rRNA methyltransferase activity [Evidence IEA]
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
COORDINATES: protein motif:HMM:TIGR00478.1
COORDINATES: similar to AA sequence:RefSeq:WP_008035715.1
GO:0008661 - 1-deoxy-D-xylulose-5-phosphate synthase activity [Evidence IEA]
GO:0009240 - isopentenyl diphosphate biosynthetic process [Evidence IEA]; GO:0008615 - pyridoxine biosynthetic process [Evidence IEA]; GO:0009228 - thiamine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012568.2
COORDINATES: protein motif:HMM:NF002139.0
COORDINATES: protein motif:HMM:TIGR00057.1
GO:0061710 - L-threonylcarbamoyladenylate synthase [Evidence IEA]
COORDINATES: protein motif:HMM:NF014910.2
COORDINATES: protein motif:HMM:NF014626.2
COORDINATES: protein motif:HMM:NF022456.2
COORDINATES: protein motif:HMM:NF018302.2
COORDINATES: protein motif:HMM:NF002542.0
COORDINATES: protein motif:HMM:NF039461.1
COORDINATES: protein motif:HMM:NF013384.2
GO:0016829 - lyase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005133366.1
GO:0004160 - dihydroxy-acid dehydratase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF006050.0
COORDINATES: protein motif:HMM:NF016300.2
The SIMPL domain is named for its presence in mouse protein SIMPL (signalling molecule that associates with mouse pelle-like kinase). Bacterial member BP26, from Brucella, was shown to assemble into a channel-like structure, while YggE from E. coli has been associated with resistance to oxidative stress.; The SIMPL domain is named for its presence in mouse protein SIMPL (signalling molecule that associates with mouse pelle-like kinase). Bacterial member BP26, from Brucella, was shown to assemble into a channel-like structure, while YggE from E. coli has been associated with resistance to oxidative stress; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF008037.0
GO:0004146 - dihydrofolate reductase activity [Evidence IEA]
GO:0046654 - tetrahydrofolate biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005123418.1
GO:0004799 - thymidylate synthase activity [Evidence IEA]
GO:0006231 - dTMP biosynthetic process [Evidence IEA]
COORDINATES: nucleotide motif:Rfam:14.4:RF01849
alphaproteobacterial-type; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: protein motif:HMM:NF016286.2
ClpXP protease specificity-enhancing factor SspB
COORDINATES: protein motif:HMM:NF017493.2
COORDINATES: protein motif:HMM:NF024858.2
ribbon-helix-helix domain-containing protein
COORDINATES: protein motif:HMM:NF012861.2
COORDINATES: protein motif:HMM:NF024754.2
COORDINATES: protein motif:HMM:NF022441.2
COORDINATES: protein motif:HMM:NF018076.2
50S ribosomal protein L11 methyltransferase
COORDINATES: protein motif:HMM:NF005932.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003911 - DNA ligase (NAD+) activity [Evidence IEA]
GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00634.1
COORDINATES: protein motif:HMM:TIGR03302.1
outer membrane protein assembly factor BamD
COORDINATES: protein motif:HMM:NF013465.2
zinc ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_003821169.1
GO:0003868 - 4-hydroxyphenylpyruvate dioxygenase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00065.1
COORDINATES: protein motif:HMM:TIGR01174.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
GO:0043093 - FtsZ-dependent cytokinesis [Evidence IEA]
COORDINATES: protein motif:HMM:NF015739.2
FtsQ-type POTRA domain-containing protein
COORDINATES: protein motif:HMM:TIGR01205.1
COORDINATES: protein motif:HMM:NF010480.0
GO:0071949 - FAD binding [Evidence IEA]; GO:0008762 - UDP-N-acetylmuramate dehydrogenase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008036584.1
GO:0008763 - UDP-N-acetylmuramate-L-alanine ligase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01133.1
GO:0050511 - undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase activity [Evidence IEA]
undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase
COORDINATES: protein motif:HMM:TIGR02614.1
GO:0051301 - cell division [Evidence IEA]; GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00445.1
GO:0008963 - phospho-N-acetylmuramoyl-pentapeptide-transferase activity [Evidence IEA]
phospho-N-acetylmuramoyl-pentapeptide- transferase
COORDINATES: protein motif:HMM:NF010693.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0047480 - UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]; GO:0071555 - cell wall organization [Evidence IEA]
UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase
COORDINATES: protein motif:HMM:NF001124.0
GO:0016881 - acid-amino acid ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]; GO:0051301 - cell division [Evidence IEA]; GO:0008360 - regulation of cell shape [Evidence IEA]
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase
COORDINATES: protein motif:HMM:NF013100.2
COORDINATES: protein motif:HMM:NF013919.2
GO:0016434 - rRNA (cytosine) methyltransferase activity [Evidence IEA]
16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH
COORDINATES: protein motif:HMM:NF014439.2
division/cell wall cluster transcriptional repressor MraZ
COORDINATES: protein motif:HMM:NF018894.2
GO:0035438 - cyclic-di-GMP binding [Evidence IEA]
COORDINATES: nucleotide motif:Rfam:14.4:RF00010
COORDINATES: protein motif:HMM:NF016955.2
TerB family tellurite resistance protein
COORDINATES: protein motif:HMM:NF013613.2
GO:0007155 - cell adhesion [Evidence IEA]; GO:0006508 - proteolysis [Evidence IEA]
COORDINATES: protein motif:HMM:NF014585.2
hydantoinase B/oxoprolinase family protein
COORDINATES: protein motif:HMM:NF012652.2
COORDINATES: protein motif:HMM:NF039960.1
transglycosylase SLT domain-containing protein
COORDINATES: protein motif:HMM:NF014680.2
COORDINATES: similar to AA sequence:RefSeq:WP_008166904.1
GO:0042586 - peptide deformylase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00460.1
GO:0004479 - methionyl-tRNA formyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00071.1
COORDINATES: protein motif:HMM:TIGR01993.1
COORDINATES: protein motif:HMM:NF019292.2
nucleoside recognition domain-containing protein
COORDINATES: protein motif:HMM:NF023464.2
COORDINATES: protein motif:HMM:NF012899.2
GO:0003991 - acetylglutamate kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03598.1
ribosome biogenesis GTP-binding protein YihA/YsxC
COORDINATES: protein motif:HMM:NF002353.0
GO:0032977 - membrane insertase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004933881.1
membrane protein insertion efficiency factor YidD
COORDINATES: protein motif:HMM:NF013022.2
GO:0004526 - ribonuclease P activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011508608.1
COORDINATES: protein motif:HMM:NF018001.2
COORDINATES: similar to AA sequence:RefSeq:WP_007403222.1
COORDINATES: similar to AA sequence:RefSeq:WP_004144723.1
COORDINATES: similar to AA sequence:RefSeq:WP_007403260.1
COORDINATES: similar to AA sequence:RefSeq:WP_003021871.1
GO:0009320 - phosphoribosylaminoimidazole carboxylase complex [Evidence IEA]
GO:0004638 - phosphoribosylaminoimidazole carboxylase activity [Evidence IEA]
5-(carboxyamino)imidazole ribonucleotide mutase
COORDINATES: protein motif:HMM:NF004676.0
5-(carboxyamino)imidazole ribonucleotide synthase
COORDINATES: protein motif:HMM:TIGR02396.1
COORDINATES: similar to AA sequence:RefSeq:WP_020041874.1
COORDINATES: protein motif:HMM:NF012694.2
type II secretion system F family protein
COORDINATES: protein motif:HMM:NF021025.2
COORDINATES: protein motif:HMM:NF012485.2
type II and III secretion system protein family protein
COORDINATES: protein motif:HMM:TIGR03177.1
COORDINATES: protein motif:HMM:NF013632.2
COORDINATES: similar to AA sequence:RefSeq:WP_004627381.1
COORDINATES: protein motif:HMM:NF012722.2
COORDINATES: similar to AA sequence:RefSeq:WP_019977129.1
COORDINATES: protein motif:HMM:NF001263.0
GO:0003677 - DNA binding [Evidence IEA]; GO:0070063 - RNA polymerase binding [Evidence IEA]
GO:0032784 - regulation of DNA-templated transcription elongation [Evidence IEA]
COORDINATES: protein motif:HMM:NF009455.0
carbamoyl-phosphate synthase large subunit
COORDINATES: similar to AA sequence:RefSeq:WP_020045054.1
GO:0005951 - carbamoyl-phosphate synthase complex [Evidence IEA]
GO:0004088 - carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity [Evidence IEA]
glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit
COORDINATES: protein motif:HMM:NF020977.2
COORDINATES: protein motif:HMM:TIGR01391.1
GO:0003896 - DNA primase activity [Evidence IEA]
GO:0006269 - DNA replication, synthesis of RNA primer [Evidence IEA]
COORDINATES: protein motif:HMM:NF004208.0
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF017591.2
COORDINATES: protein motif:HMM:TIGR00079.1
COORDINATES: protein motif:HMM:NF039701.1
COORDINATES: protein motif:HMM:NF013884.2
COORDINATES: protein motif:HMM:NF016296.2
COORDINATES: protein motif:HMM:NF013595.2
peptidyl-alpha-hydroxyglycine alpha-amidating lyase family protein
COORDINATES: protein motif:HMM:NF022768.2
COORDINATES: protein motif:HMM:NF013695.2
COORDINATES: protein motif:HMM:TIGR00276.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0052693 - epoxyqueuosine reductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012770.2
COORDINATES: similar to AA sequence:RefSeq:WP_008034816.1
GO:0004829 - threonine-tRNA ligase activity [Evidence IEA]
GO:0006435 - threonyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012607480.1
COORDINATES: protein motif:HMM:NF007493.0
COORDINATES: protein motif:HMM:NF014066.2
COORDINATES: similar to AA sequence:RefSeq:WP_007009054.1
COORDINATES: similar to AA sequence:RefSeq:WP_009635878.1
COORDINATES: protein motif:HMM:TIGR00468.1
GO:0009328 - phenylalanine-tRNA ligase complex [Evidence IEA]
GO:0004826 - phenylalanine-tRNA ligase activity [Evidence IEA]
GO:0006432 - phenylalanyl-tRNA aminoacylation [Evidence IEA]
phenylalanine--tRNA ligase subunit alpha
COORDINATES: protein motif:HMM:TIGR00472.1
COORDINATES: similar to AA sequence:RefSeq:WP_016291381.1
COORDINATES: similar to AA sequence:RefSeq:WP_011806522.1
COORDINATES: similar to AA sequence:RefSeq:WP_002713690.1
COORDINATES: similar to AA sequence:RefSeq:WP_012972720.1
COORDINATES: protein motif:HMM:NF025946.2
COORDINATES: protein motif:HMM:NF040386.1
COORDINATES: similar to AA sequence:RefSeq:WP_008034078.1
COORDINATES: protein motif:HMM:NF025343.2
COORDINATES: protein motif:HMM:TIGR00655.1
GO:0008864 - formyltetrahydrofolate deformylase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013767.2
COORDINATES: protein motif:HMM:NF004793.0
COORDINATES: nucleotide motif:Rfam:14.4:RF00174
cobalamin riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: protein motif:HMM:NF013648.2
COORDINATES: protein motif:HMM:NF013219.2
GO:0017000 - antibiotic biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004574802.1
COORDINATES: protein motif:HMM:NF008737.0
COORDINATES: protein motif:HMM:NF003707.0
COORDINATES: protein motif:HMM:NF011999.0
GO:0004672 - protein kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF017830.2
COORDINATES: protein motif:HMM:NF012335.2
zinc-dependent alcohol dehydrogenase family protein
COORDINATES: protein motif:HMM:NF036501.2
GO:0043231 - intracellular membrane-bounded organelle [Evidence IEA]
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]
CDGSH iron-sulfur domain-containing protein
COORDINATES: protein motif:HMM:NF014757.2
GO:0070403 - NAD+ binding [Evidence IEA]
3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein
COORDINATES: protein motif:HMM:NF013231.2
COORDINATES: protein motif:HMM:NF006179.0
indolepyruvate oxidoreductase subunit beta family protein
indolepyruvate ferredoxin oxidoreductase subunit alpha
COORDINATES: protein motif:HMM:NF006107.0
COORDINATES: protein motif:HMM:NF020976.2
COORDINATES: protein motif:HMM:NF005291.0
GO:0016746 - acyltransferase activity [Evidence IEA]
acyl-[ACP]--phospholipid O-acyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_017980630.1
COORDINATES: similar to AA sequence:RefSeq:WP_008528408.1
COORDINATES: protein motif:HMM:NF024701.2
COORDINATES: protein motif:HMM:NF013633.2
RNA-binding S4 domain-containing protein
COORDINATES: protein motif:HMM:NF012493.2
COORDINATES: protein motif:HMM:NF015956.2
COORDINATES: similar to AA sequence:RefSeq:WP_017980473.1
GO:0015093 - ferrous iron transmembrane transporter activity [Evidence IEA]
GO:0006826 - iron ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003819290.1
electron transfer flavoprotein subunit beta/FixA family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008642612.1
COORDINATES: similar to AA sequence:RefSeq:WP_016293396.1
GO:0070403 - NAD+ binding [Evidence IEA]; GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]
COORDINATES: protein motif:HMM:NF041384.1
COORDINATES: protein motif:HMM:NF017464.2
COORDINATES: protein motif:HMM:TIGR02081.1
COORDINATES: protein motif:HMM:NF001209.0
COORDINATES: similar to AA sequence:RefSeq:WP_020044653.1
prephenate/arogenate dehydrogenase family protein
COORDINATES: protein motif:HMM:NF021423.2
COORDINATES: protein motif:HMM:NF014724.2
COORDINATES: protein motif:HMM:TIGR02673.1
GO:0000910 - cytokinesis [Evidence IEA]; GO:0006810 - transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF023334.2
COORDINATES: protein motif:HMM:NF025152.2
COORDINATES: protein motif:HMM:TIGR01048.1
GO:0008836 - diaminopimelate decarboxylase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012257.2
COORDINATES: similar to AA sequence:RefSeq:WP_000457386.1
COORDINATES: similar to AA sequence:RefSeq:WP_007369914.1
COORDINATES: protein motif:HMM:NF008955.0
GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01027.1
GO:0004349 - glutamate 5-kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00407.1
GO:0004350 - glutamate-5-semialdehyde dehydrogenase activity [Evidence IEA]; GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00482.1
nicotinate-nucleotide adenylyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_019977573.1
GO:0043022 - ribosome binding [Evidence IEA]
GO:0017148 - negative regulation of translation [Evidence IEA]
COORDINATES: protein motif:HMM:NF000989.0
23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH
COORDINATES: protein motif:HMM:TIGR01307.1
GO:0046537 - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity [Evidence IEA]
2,3-bisphosphoglycerate-independent phosphoglycerate mutase
peptidoglycan DD-metalloendopeptidase family protein
COORDINATES: protein motif:HMM:TIGR00225.1
COORDINATES: similar to AA sequence:RefSeq:WP_019977667.1
COORDINATES: protein motif:HMM:NF001851.0
GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1) [Evidence IEA]
GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020045332.1
GO:0000275 - mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1) [Evidence IEA]; GO:0045262 - plasma membrane proton-transporting ATP synthase complex, catalytic core F(1) [Evidence IEA]; GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1) [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01146.1
COORDINATES: similar to AA sequence:RefSeq:WP_016292873.1
COORDINATES: protein motif:HMM:NF004406.0
COORDINATES: protein motif:HMM:NF004070.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003678 - DNA helicase activity [Evidence IEA]
GO:0032508 - DNA duplex unwinding [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00875.1
GO:0016832 - aldehyde-lyase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF016243.2
COORDINATES: protein motif:HMM:NF012432.2
COORDINATES: similar to AA sequence:RefSeq:WP_000179874.1
GO:0045252 - oxoglutarate dehydrogenase complex [Evidence IEA]
GO:0004149 - dihydrolipoyllysine-residue succinyltransferase activity [Evidence IEA]
2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase
COORDINATES: protein motif:HMM:NF006914.0
GO:0004591 - oxoglutarate dehydrogenase (succinyl-transferring) activity [Evidence IEA]; GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
2-oxoglutarate dehydrogenase E1 component
COORDINATES: similar to AA sequence:RefSeq:WP_018287377.1
COORDINATES: similar to AA sequence:RefSeq:WP_020044192.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003824 - catalytic activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
ADP-forming succinate--CoA ligase subunit beta
COORDINATES: protein motif:HMM:NF004863.0
GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]
COORDINATES: protein motif:HMM:NF015902.3
GO:0051301 - cell division [Evidence IEA]
COORDINATES: protein motif:HMM:NF015679.2
COORDINATES: protein motif:HMM:TIGR02978.1
envelope stress response membrane protein PspC
COORDINATES: protein motif:HMM:NF018382.2
envelope stress response membrane protein PspB
COORDINATES: protein motif:HMM:TIGR02977.1
COORDINATES: protein motif:HMM:TIGR02974.1
phage shock protein operon transcriptional activator
COORDINATES: protein motif:HMM:NF002872.1
GO:0006002 - fructose 6-phosphate metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF015999.2
prolyl-tRNA synthetase associated domain-containing protein
COORDINATES: protein motif:HMM:NF012314.2
COORDINATES: protein motif:HMM:NF014269.2
LON peptidase substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004201390.1
COORDINATES: protein motif:HMM:TIGR01988.1
UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase
COORDINATES: protein motif:HMM:NF013104.2
COORDINATES: protein motif:HMM:NF013727.2
DNA translocase FtsK 4TM domain-containing protein
COORDINATES: protein motif:HMM:NF015510.2
outer membrane lipoprotein carrier protein LolA
COORDINATES: protein motif:HMM:TIGR00195.1
COORDINATES: protein motif:HMM:NF013411.2
COORDINATES: protein motif:HMM:NF001591.0
GO:0003935 - GTP cyclohydrolase II activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01591.1
GO:0009326 - formate dehydrogenase complex [Evidence IEA]
GO:0008863 - formate dehydrogenase (NAD+) activity [Evidence IEA]
GO:0015942 - formate metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013662.2
COORDINATES: protein motif:HMM:NF013426.2
NAD(P)H-dependent oxidoreductase subunit E
COORDINATES: protein motif:HMM:TIGR02821.1
GO:0018738 - S-formylglutathione hydrolase activity [Evidence IEA]
GO:0046292 - formaldehyde metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003984083.1
GO:0004024 - alcohol dehydrogenase activity, zinc-dependent [Evidence IEA]; GO:0051903 - S-(hydroxymethyl)glutathione dehydrogenase activity [Evidence IEA]
GO:0006113 - fermentation [Evidence IEA]; GO:0009404 - toxin metabolic process [Evidence IEA]
S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase
COORDINATES: protein motif:HMM:NF024703.2
COORDINATES: protein motif:HMM:NF001968.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0004824 - lysine-tRNA ligase activity [Evidence IEA]; GO:0000049 - tRNA binding [Evidence IEA]
GO:0006430 - lysyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF014453.2
COORDINATES: protein motif:HMM:NF006718.0
alternative ribosome rescue aminoacyl-tRNA hydrolase ArfB
COORDINATES: protein motif:HMM:TIGR00856.1
COORDINATES: protein motif:HMM:TIGR00652.1
GO:0008837 - diaminopimelate epimerase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF006719.0
COORDINATES: similar to AA sequence:RefSeq:WP_012606575.1
COORDINATES: protein motif:HMM:NF011729.0
GO:0051287 - NAD binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
GO:0000271 - polysaccharide biosynthetic process [Evidence IEA]
Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB
COORDINATES: similar to AA sequence:RefSeq:WP_016292024.1
COORDINATES: protein motif:HMM:NF003587.0
GO:0004781 - sulfate adenylyltransferase (ATP) activity [Evidence IEA]
GO:0019419 - sulfate reduction [Evidence IEA]
sulfate adenylyltransferase subunit CysD
COORDINATES: protein motif:HMM:NF004035.0
sulfate adenylyltransferase subunit CysN
COORDINATES: similar to AA sequence:RefSeq:WP_003113426.1
COORDINATES: protein motif:HMM:NF013227.2
DegT/DnrJ/EryC1/StrS family aminotransferase
COORDINATES: protein motif:HMM:NF025953.2
COORDINATES: protein motif:HMM:NF016145.2
polysaccharide pyruvyl transferase family protein
COORDINATES: protein motif:HMM:NF014732.2
GO:0009103 - lipopolysaccharide biosynthetic process [Evidence IEA]
Wzz/FepE/Etk N-terminal domain-containing protein
COORDINATES: protein motif:HMM:TIGR00236.1
GO:0008761 - UDP-N-acetylglucosamine 2-epimerase activity [Evidence IEA]
UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)
COORDINATES: protein motif:HMM:NF024968.2
COORDINATES: protein motif:HMM:TIGR03570.1
DegT/DnrJ/EryC1/StrS aminotransferase family protein
COORDINATES: protein motif:HMM:NF025418.2
COORDINATES: protein motif:HMM:NF013397.2
formate/nitrite transporter family protein
COORDINATES: protein motif:HMM:NF027591.2
COORDINATES: similar to AA sequence:RefSeq:WP_019977363.1
COORDINATES: protein motif:HMM:NF013353.2
COORDINATES: protein motif:HMM:NF009941.0
GO:0004157 - dihydropyrimidinase activity [Evidence IEA]
ABC transporter substrate-binding protein/permease
COORDINATES: similar to AA sequence:RefSeq:WP_002935839.1
COORDINATES: protein motif:HMM:TIGR01976.1
GO:0004671 - protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity [Evidence IEA]
GO:0006481 - C-terminal protein methylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF016493.2
GO:0015627 - type II protein secretion system complex [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01709.2
COORDINATES: protein motif:HMM:NF037980.1
type II secretion system minor pseudopilin GspK
COORDINATES: protein motif:HMM:NF023044.2
COORDINATES: protein motif:HMM:NF014551.2
COORDINATES: similar to AA sequence:RefSeq:WP_003061936.1
type II secretion system major pseudopilin GspG
COORDINATES: protein motif:HMM:TIGR02120.1
type II secretion system inner membrane protein GspF
COORDINATES: protein motif:HMM:TIGR02517.1
COORDINATES: protein motif:HMM:NF022800.2
winged helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF039309.1
COORDINATES: protein motif:HMM:NF019194.2
COORDINATES: similar to AA sequence:RefSeq:WP_003849026.1
COORDINATES: protein motif:HMM:NF025137.2
COORDINATES: protein motif:HMM:TIGR00536.1
GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IEA]
GO:0018364 - peptidyl-glutamine methylation [Evidence IEA]; GO:0006412 - translation [Evidence IEA]
peptide chain release factor N(5)-glutamine methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_003202249.1
GO:0016149 - translation release factor activity, codon specific [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00442.1
GO:0004821 - histidine-tRNA ligase activity [Evidence IEA]
GO:0006427 - histidyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017490183.1
GO:0046429 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity [Evidence IEA]
GO:0044237 - cellular metabolic process [Evidence IEA]
flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase
COORDINATES: protein motif:HMM:NF024855.2
COORDINATES: protein motif:HMM:NF024805.2
COORDINATES: protein motif:HMM:TIGR01417.1
GO:0008965 - phosphoenolpyruvate-protein phosphotransferase activity [Evidence IEA]
GO:0009401 - phosphoenolpyruvate-dependent sugar phosphotransferase system [Evidence IEA]; GO:0006808 - regulation of nitrogen utilization [Evidence IEA]
phosphoenolpyruvate--protein phosphotransferase
COORDINATES: protein motif:HMM:NF015047.2
COORDINATES: similar to AA sequence:RefSeq:WP_008036546.1
GO:0004072 - aspartate kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01983.1
GO:0008689 - 3-demethylubiquinone-9 3-O-methyltransferase activity [Evidence IEA]
bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG
COORDINATES: protein motif:HMM:TIGR00129.1
GO:0009061 - anaerobic respiration [Evidence IEA]; GO:0015942 - formate metabolic process [Evidence IEA]
formate dehydrogenase accessory sulfurtransferase FdhD
COORDINATES: protein motif:HMM:TIGR02665.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0070568 - guanylyltransferase activity [Evidence IEA]
molybdenum cofactor guanylyltransferase MobA
COORDINATES: protein motif:HMM:NF018391.2
COORDINATES: similar to AA sequence:RefSeq:WP_017458192.1
COORDINATES: protein motif:HMM:NF039185.1
COORDINATES: protein motif:HMM:TIGR00586.1
GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [Evidence IEA]
COORDINATES: protein motif:HMM:NF003802.0
GO:0004358 - glutamate N-acetyltransferase activity [Evidence IEA]
bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ
COORDINATES: similar to AA sequence:RefSeq:WP_020044535.1
GO:0006886 - intracellular protein transport [Evidence IEA]; GO:0017038 - protein import [Evidence IEA]; GO:0006605 - protein targeting [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020045072.1
acetyl-CoA carboxylase carboxyltransferase subunit alpha
COORDINATES: protein motif:HMM:NF001399.0
COORDINATES: protein motif:HMM:NF010552.0
COORDINATES: protein motif:HMM:TIGR01357.1
GO:0003856 - 3-dehydroquinate synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013741.2
COORDINATES: protein motif:HMM:NF024252.2
COORDINATES: protein motif:HMM:NF013844.2
COORDINATES: protein motif:HMM:NF015523.2
COORDINATES: protein motif:HMM:NF033779.0
Tim44/TimA family putative adaptor protein
COORDINATES: protein motif:HMM:NF016102.2
COORDINATES: protein motif:HMM:NF004392.0
GO:0051262 - protein tetramerization [Evidence IEA]; GO:0015031 - protein transport [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00573.1
COORDINATES: protein motif:HMM:TIGR00152.1
GO:0004140 - dephospho-CoA kinase activity [Evidence IEA]
Dephospho-CoA kinase (CoaE) performs the final step in coenzyme A biosynthesis.; Dephospho-CoA kinase (CoaE) performs the final step in coenzyme A biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF001312.0
GO:0004764 - shikimate 3-dehydrogenase (NADP+) activity [Evidence IEA]
GO:0019632 - shikimate metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF014591.2
GO:0047429 - nucleoside triphosphate diphosphatase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF003742.0
pyruvate, water dikinase regulatory protein
COORDINATES: protein motif:HMM:NF013381.2
GO:0004853 - uroporphyrinogen decarboxylase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00109.1
GO:0004325 - ferrochelatase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF015608.2
COORDINATES: similar to AA sequence:RefSeq:WP_020044376.1
GO:0008186 - ATP-dependent activity, acting on RNA [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013222.2
COORDINATES: protein motif:HMM:NF003661.0
GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE
COORDINATES: similar to AA sequence:RefSeq:WP_000541029.1
GO:0008033 - tRNA processing [Evidence IEA]; GO:0002098 - tRNA wobble uridine modification [Evidence IEA]
tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG
COORDINATES: protein motif:HMM:NF014575.2
GO:0005575 - cellular_component [Evidence IEA]
GO:0046118 - 7-methylguanosine biosynthetic process [Evidence IEA]; GO:0031167 - rRNA methylation [Evidence IEA]
16S rRNA (guanine(527)-N(7))-methyltransferase RsmG
COORDINATES: similar to AA sequence:RefSeq:WP_012096464.1
COORDINATES: protein motif:HMM:TIGR00180.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: protein motif:HMM:TIGR02944.1
GO:0016226 - iron-sulfur cluster assembly [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
SUF system Fe-S cluster assembly regulator
COORDINATES: protein motif:HMM:NF008773.0
COORDINATES: similar to AA sequence:RefSeq:WP_005879209.1
COORDINATES: protein motif:HMM:TIGR01981.1
COORDINATES: protein motif:HMM:TIGR01979.1
COORDINATES: protein motif:HMM:TIGR02945.1
SUF system Fe-S cluster assembly protein
COORDINATES: protein motif:HMM:TIGR03607.1
COORDINATES: protein motif:HMM:NF016041.2
COORDINATES: protein motif:HMM:NF019511.2
COORDINATES: similar to AA sequence:RefSeq:WP_020044480.1
GO:0004750 - D-ribulose-phosphate 3-epimerase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF019552.2
COORDINATES: similar to AA sequence:RefSeq:WP_018287218.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0003937 - IMP cyclohydrolase activity [Evidence IEA]; GO:0004643 - phosphoribosylaminoimidazolecarboxamide formyltransferase activity [Evidence IEA]
GO:0006189 - 'de novo' IMP biosynthetic process [Evidence IEA]; GO:0006164 - purine nucleotide biosynthetic process [Evidence IEA]
bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
COORDINATES: protein motif:HMM:NF000658.1
COORDINATES: protein motif:HMM:NF016944.2
COORDINATES: protein motif:HMM:NF012699.2
COORDINATES: protein motif:HMM:TIGR00351.1
GO:0009325 - nitrate reductase complex [Evidence IEA]
GO:0008940 - nitrate reductase activity [Evidence IEA]
respiratory nitrate reductase subunit gamma
COORDINATES: protein motif:HMM:TIGR00684.1
GO:0051131 - chaperone-mediated protein complex assembly [Evidence IEA]
nitrate reductase molybdenum cofactor assembly chaperone
COORDINATES: protein motif:HMM:TIGR01660.1
GO:0009061 - anaerobic respiration [Evidence IEA]
COORDINATES: protein motif:HMM:NF018875.2
COORDINATES: protein motif:HMM:NF014641.2
COORDINATES: protein motif:HMM:TIGR00212.1
GO:0004418 - hydroxymethylbilane synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03723.1
tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD
COORDINATES: protein motif:HMM:NF000942.0
NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
COORDINATES: protein motif:HMM:NF015735.2
COORDINATES: protein motif:HMM:NF012575.2
COORDINATES: similar to AA sequence:RefSeq:WP_018054574.1
GO:0004478 - methionine adenosyltransferase activity [Evidence IEA]
GO:0006556 - S-adenosylmethionine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00091.1
GO:0008176 - tRNA (guanine-N7-)-methyltransferase activity [Evidence IEA]
tRNA (guanosine(46)-N7)-methyltransferase TrmB
COORDINATES: protein motif:HMM:NF000932.0
COORDINATES: protein motif:HMM:TIGR01953.1
COORDINATES: protein motif:HMM:NF016204.2
COORDINATES: protein motif:HMM:TIGR00487.1
COORDINATES: protein motif:HMM:NF001802.0
COORDINATES: protein motif:HMM:TIGR00431.1
GO:0004730 - pseudouridylate synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004933502.1
COORDINATES: similar to AA sequence:RefSeq:WP_009567342.1
GO:0004654 - polyribonucleotide nucleotidyltransferase activity [Evidence IEA]
GO:0006402 - mRNA catabolic process [Evidence IEA]
polyribonucleotide nucleotidyltransferase
GO:0018580 - nitronate monooxygenase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF018095.2
COORDINATES: protein motif:HMM:NF012607.2
COORDINATES: protein motif:HMM:NF013094.2
GO:0008641 - ubiquitin-like modifier activating enzyme activity [Evidence IEA]
molybdopterin-synthase adenylyltransferase MoeB
COORDINATES: protein motif:HMM:NF001862.0
GO:0004170 - dUTP diphosphatase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]
GO:0006226 - dUMP biosynthetic process [Evidence IEA]; GO:0046081 - dUTP catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00521.1
GO:0004632 - phosphopantothenate--cysteine ligase activity [Evidence IEA]; GO:0004633 - phosphopantothenoylcysteine decarboxylase activity [Evidence IEA]
GO:0015937 - coenzyme A biosynthetic process [Evidence IEA]; GO:0015939 - pantothenate metabolic process [Evidence IEA]
bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC
COORDINATES: protein motif:HMM:TIGR01982.1
GO:0016709 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [Evidence IEA]
COORDINATES: protein motif:HMM:NF001242.0
bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE
COORDINATES: protein motif:HMM:NF002211.1
GO:0003684 - damaged DNA binding [Evidence IEA]; GO:0019104 - DNA N-glycosylase activity [Evidence IEA]; GO:0003906 - DNA-(apurinic or apyrimidinic site) endonuclease activity [Evidence IEA]; GO:0016799 - hydrolase activity, hydrolyzing N-glycosyl compounds [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008534 - oxidized purine nucleobase lesion DNA N-glycosylase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO:0006284 - base-excision repair [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]
bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase
COORDINATES: similar to AA sequence:RefSeq:WP_020044272.1