Encephalitozoon cuniculi GB-M1 chromosome I, complete sequence.
Eukaryota; Fungi; Fungi incertae sedis; Microsporidia; Unikaryonidae; Encephalitozoon.
Identification of transcriptional signals in Encephalitozoon cuniculi widespread among Microsporidia phylum: support for accurate structural genome annotation
Genome sequence and gene compaction of the eukaryote parasite Encephalitozoon cuniculi
Transcriptional signals for accurate microsporidian genome annotation, supporting high quality comparative genomics
Submitted (22-DEC-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA
Submitted (30-AUG-2000) Genoscope -Centre National de Sequencage, 2 rue Gaston Cremieux, CP 5706, 91057 EVRY cedex, FRANCE. (E-mail : seqref@genoscope.cns.fr - Web : www.genoscope.cns.fr)
PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to AL391737.\n\nOn Mar 4, 2002 this sequence version replaced NC_003242.1.\nCorresponding author : Equipe de Parasitologie Moleculaire et\nCellulaire, UMR CNRS 6023, Universite Blaise Pascal, 63177 Aubiere\ncedex, France E-mail : Christian.VIVARES@lbp.univ-bpclermont.fr Tel\n: (33) (0)4.73.40.74.57 Fax : (33) (0)4.73.40.74.55 Web :\nhttp://www.protistes.univ-bpclermont.fr/fr/parasito.htm The\nsubmitted sequence encompasses the coding core of the chromosome.\nThe telomeric and subtelomeric sequences are not included in this\nsubmission.\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: INSDC submitter\nAnnotation Status :: Full annotation\nAnnotation Pipeline :: Eukaryotic Annotation Propagation Pipeline\n##Genome-Annotation-Data-END##
01_0010, unknown, gene found by Glimmer [Shorter 3 1097 99]
Protein overlapping with rRNA (ECU01_0020, CAD24874.1) was converted to a misc_feature.
LARGE SUBUNIT (LSU)rDNA (one copy), E. cuniculi gene DNA cross-ref : AJ005581
SMALL SUBUNIT (SSU)rDNA (one copy), E. cuniculi gene DNA cross-ref : AJ005581, L17072
01_0110, some similarity to GLYPICAN-4 (HEPARAN SULFATE CELL SURFACE PROTEOGLYCAN),GPC4_MOUSE,possible surface protein with GPI anchor,gene found by Glimmer
01_0140, GLUTAMYL-AMINOPEPTIDASE, AMPE_HUMAN, APE2_yeast, gene found by Glimmer
01_0170, DIHYDROFOLATE REDUCTASE,DYR_ENCCU, DRT2_ARATH, E. cuniculi gene DNA cross- ref : AJ005644, gene found by Glimmer, [Bad Olap 19 338 0] [Shadowed by 21]
01_0180, THYMIDYLATE SYNTHASE, TYSY_ENCCU, TYSY_MOUSE, E. cuniculi gene DNA cross-ref : AJ005644, gene found by Glimmer [Shorter 21 382 99] [Shorter 23 403 99]
01_0190, SERINE HYDROXYMETHYLTRANSFERASE, GLYC_RABIT,GLYC_yeast, E. cuniculi gene DNA cross-ref : AJ005644, gene found by Glimmer [Bad Olap 22 403 0], modified ATG by annotation
01_0200, ABC TRANSPORTER, ABC7_HUMAN, gene found by Glimmer
01_0210, BELONGS TO THE NAP/SET FAMILY (INTERACTS WITH B-TYPE CYCLIN, ASP-RICH PROTEIN), SET_DROME, gene found by Glimmer
01_0240, FRUCTOSE-BISPHOSPHATE ALDOLASE B, ALFB-HUMAN, gene found by Glimmer
01_0260i, DYNEIN LIGHT CHAIN 1, DYL1_yeast,modified ATG by annotation, gene found by Glimmer [Shorter 32 368 99]
01_0290, Putative protein with Zn finger domain, gene found by Glimmer
01_0310, 60S RIBOSOMAL PROTEIN L8 (L2P family), RL8_XENLA, gene found by Glimmer
01_0350, similarity to CHROMODOMAIN HELICASE DNA-BINDING PROTEIN 2 (SNF2/RAD54 family), CHD2_HUMAN, gene found by Glimmer
01_0360, similarity to HYPOTHETICAL PROTEIN YM63_CAEEL, gene found by Glimmer
01_0370, ZUOTIN-RELATED PROTEIN (Z-DNA BINDING PROTEIN), ZUO1_yeast, ZRF1_MOUSE, gene found by Glimmer
01_0380, similarity to HYPOTHETICAL PROTEIN: YN28_yeast, gene found by Glimmer [Bad Olap 45 46 0]
01_0390, unknown, gene found by Glimmer [Shorter 44 46 96]
tRNA found by tRNAscan-SE, tRNA type: Gly, Anticodon: TCC, Score : 65.87
cleavage polyadenylation factor RNA-binding subunit YTH1
01_0430, ZINC FINGER PROTEIN, ZFS1_SCHPO, gene found by Glimmer
01_0460, ACTIN, ACT1-STRFN, gene found by Glimmer, modified ATG by annotation
01_0470, TRANSCRIPTION FACTOR SIMILAR TO FORK HEAD PROTEIN, FKH2_yeast, gene found by Glimmer
01_0490, similarity to HYPOTHETICAL PROTEIN YQBP_BACSU, gene found by Glimmer
01_0510, NIFU-LIKE PROTEIN, NIFU_RICPR, ISU2_yeast, gene found by Glimmer
01_0540, Putative protein with RNA-binding domain, gene found by Glimmer
01_0545, SMALL NUCLEAR RIBONUCLEOPROTEIN (U1/U2 snRNP), SMD1_CAEEL
01_0570, DnaJ PROTEIN HOMOLOG, DNAJ_THEMA, gene found by Glimmer
DNA-directed RNA polymerase core subunit RPC40
01_0600, DNA-DIRECTED RNA POLYMERASE I, 40kDa subunit, RPA5_HUMAN, gene found by Glimmer
01_0610, WD-REPEAT PROTEIN, YG4C_yeast, gene found by Glimmer
01_0630, similarity to SERINE/THREONINE PROTEIN KINASE REQUIRED FOR ACTIN RING AND SEPTATION, PLO1_SCHPO, gene found by Glimmer
01_0650, PHOSPHOACETYL-GLUCOSAMINE MUTASE, PCM1_SCHPO, gene found by Glimmer [Bad Olap 75 99 43]
01_0660, some similarity to THIOREDOXIN REDUCTASE, TRXB_BORBU, gene found by Glimmer [Shorter 74 99 51] [Shorter 76 31 22]
01_0670, unknown, gene found by Glimmer [Bad Olap 75 31 1]
01_0680, THIOREDOXIN REDUCTASE, TRXB_BORBU, gene found by Glimmer
01_0700, EUKARYOTIC TRANSLATION INITIATION FACTOR 2 (eIF2), GAMMA SUBUNIT, IF2G_ENCCU, E. cuniculi gene DNA cross-ref : AJ006823, gene found by Glimmer
01_0720, similarity to the THIOREDOXIN family, YPD3_CAEEL, gene found by Glimmer,[Delay by 288 80 311 0]
01_0730, some similarity to LEPTIN RECEPTOR GENE-RELATED PROTEIN, ORBG_MOUSE,gene found by Glimmer
01_0740i, THYMIDINE KINASE, KITH_ENCCU, E. cuniculi gene DNA cross-ref : AJ006824, gene found by Glimmer, modified ATG by annotation
tRNA found by tRNAscan-SE, tRNA type: Ser, Anticodon: AGA, Score : 59.67
01_0780, ZINC FINGER PROTEIN (C3H4 type), Z151_HUMAN, gene found by Glimmer
01_0800, ALPHA,ALPHA TREHALOSE-PHOSPHATE SYNTHASE, TPSA_ASPNG, E. cuniculi gene DNA cross-ref : AJ006825, gene found by Glimmer
01_0830, ZINC FINGER PROTEIN (TRISTETRAPROLINE DOMAIN, C2H type), TTP_RAT, gene found by Glimmer
translation initiation factor eIF3 core subunit g
01_0840, similarity to 28kDa RIBONUCLEOPROTEIN (CHLOROPLAST),RO2_SPIOL, and to PARANEOPLASTIC ENCEPHALOMYELITIS ANTIGEN INVOLVED IN RNA PROCESSING, HUD_MOUSE, gene found by Glimmer
01_0850, similarity to HYPOTHETICAL PROTEIN YE18_SCHPO,gene found by Glimmer
01_0870, TREHALOSE-6-PHOSPHATE PHOSPHATASE, TPS2_yeast, gene found by Glimmer
01_0920, 40S RIBOSOMAL PROTEIN S12, RS12_XENLA, gene found by Glimmer [Shorter 102 85 90]
01_0930i, similarity to THIOREDOXIN H type, THIH_ORYSA, gene found by Glimmer [Bad Olap 101 85 0], modified ATG by annotation
01_0940, UBIQUITIN CONJUGATING ENZYME E2-20kDa subunit, UBC1_HUMAN, UBC9_yeast, gene found by Glimmer [Bad Olap 104 61 0]
01_0950, unknown, gene found by Glimmer, [Shorter 103 61 91]
01_0955, similarity to HYPOTHETICAL PROTEIN Y586_METJA
Tat binding protein 1-interacting protein
01_0960, RIBOSOME RECYCLING FACTOR, RRF_THEMA, gene found by Glimmer
01_0970, ALDOSE REDUCTASE, ALDR_MOUSE,gene found by Glimmer
01_0980, WD-REPEAT PROTEIN SIMILAR TO ANTI-TELOMERIC SILENCING PROTEIN (ANTAGONIZES TELOMERIC SILENCING), SIF2-YEAST gene found by Glimmer
01_1000, CDP-DIACYLGLYCEROL INOSITOL-3-PHOSPHATIDYLTRANSFERASE, PIS_HUMAN, gene found by Glimmer
01_1010, UBIQUITIN CONJUGATING ENZYME E2-19kDa subunit, UBC7_ARATH, gene found by Glimmer
01_1030, BINDS MICROTUBULES, BIM1/MAL3 HOMOLOG, BIM1_yeast, MAL3_SCHPO, gene found by Glimmer [Bad Olap 114 387 0]
general negative regulator of transcription
01_1040, GENERAL NEGATIVE REGULATOR OF TRANSCRIPTION, SUBUNIT 2, NOT2_yeast, gene found by Glimmer [Shorter 113 387 99]
01_1060, DNA REPAIR HELICASE RAD25 HOMOLOG, RA25_yeast, gene found by Glimmer
01_1080, NUCLEOLAR PROTEIN (NOL1/NOP2 family), p120_HUMAN, gene found by Glimmer
01_1115, similarity to HYPOTHETICAL PROTEIN OF THE CYTOCHROME B5 FAMILY: YDAA_SCHPO
01_1120, similarity to HYPOTHETICAL PROTEIN YT6J_CAEEL, gene found by Glimmer
01_1130, SUBTILISIN-LIKE SERINE PROTEASE PRECURSOR, PEPC_ASPNG, gene found by Glimmer
01_1150, similarity to CYCLIN K (C- TYPE), CYCK_HUMAN, CG1C_ORYZA, gene found by Glimmer; similarity to CYCLIN K (C-TYPE)
01_1160, CHROMOSOME SEGREGATION PROTEIN (CUT), CU14_SCHPO, gene found by Glimmer
01_1180, some similarity to DNA HELICASE RUVB, CDC44, RFC1_yeast, gene found by Glimmer
01_1190, ZINC FINGER PROTEIN, ZEP1_HUMAN, gene found by Glimmer
01_1210, DYNAMIN-RELATED PROTEIN, DYN3_RAT, VPS1_yeast, gene found by Glimmer
01_1220, GUANYLATE KINASE, KGUA_yeast, gene found by Glimmer
01_1230, PROTEIN OF THE CDC48/PAS1/SEC28 FAMILY OF ATPases, CC48_ARATH, gene found by Glimmer
01_1250, similarity to HYPOTHETICAL INTEGRAL MEMBRANE PROTEINS, YMH2_yeast, YNI7_yeast, gene found by Glimmer
01_1260, CALCIUM-BINDING PROTEIN SIMILAR TO MYOSIN REGULATORY LIGHT CHAIN 2, MLRB_RAT, gene found by Glimmer
01_1280, NUCLEAR MOVEMENT PROTEIN, NUDC_EMENI, gene found by Glimmer
01_1290, COATOMER COMPLEX, BETA SUBUNIT, COPA_BOVIN, gene found by Glimmer
01_1300, WD-REPEAT PROTEIN SIMILAR TO CELL DIVISION CONTROL PROTEIN 4 / SEL10 PROTEIN, CC4_yeast, SE10_DROME, gene found by Glimmer
01_1310, FRATAXIN HOMOLOG, FRDA_ARATH, gene found by Glimmer
01_1320, PROTEIN KINASE C (EPSILON TYPE), KCPE_RABIT, gene found by Glimmer
01_1330, TRANSCRIPTION INITIATION FACTOR OF THE TFIID FAMILY, YAG5_SCHPO, T2D7_RAT, gene found by Glimmer
01_1360, SMALL NUCLEOLAR PROTEIN, GAR1_yeast, E. cuniculi gene DNA cross-ref : AJ006825, gene found by Glimmer
01_1370, SEPTIN HOMOLOG, SPN4_SCHPO, gene found by Glimmer
01_1380, some similarity to GLYCEROPHOSPHORYLDIESTER PHOSPHODIESTERASE, GLPQ_BACSU, gene found by Glimmer
01_1390, CHITIN SYNTHASE 1, CHS1_CRYNE, gene found by Glimmer
01_1400, BELONGS TO THE NAP/SET FAMILY (INTERACTS WITH B-TYPE CYCLIN, ASP-RICH PROTEIN), SET_DROME, gene found by Glimmer
01_1410, ABC TRANSPORTER, ABC7_HUMAN, gene found by Glimmer
01_1420, SERINE HYDROXYMETHYLTRANSFERASE, GLYC_RABIT, GLYC_yeast, E. cuniculi gene DNA cross-ref : AJ005644, gene found by Glimmer [Bad Olap 159 403 0], modified ATG by annotation
01_1430, THYMIDYLATE SYNTHASE,TYSY_ENCCU, TYSY_MOUSE, E. cuniculi gene DNA cross-ref : AJ005644, gene found by Glimmer [Shorter 158 403 99][Shorter 160 382 99]
01_1450, DIHYDROFOLATE REDUCTASE, DYR_ENCCU, E. cuniculi gene DNA cross-ref : AJ005644, gene found by Glimmer [Shadowed by 160] [Bad Olap 162 338 0]
01_1470, GLUTAMYL-AMINOPEPTIDASE, PSA_MOUSE, AMPE_HUMAN, gene found by Glimmer
01_1500, some similarity to GLYPICAN-4 (HEPARAN SULFATE CELL SURFACE PROTEOGLYCAN),GPC4_MOUSE, possible surface protein with GPI anchor,gene found by Glimmer
SMALL SUBUNIT (SSU) rDNA (one copy), E. cuniculi gene DNA cross-ref : AJ005581, L17072
LARGE SUBUNIT (LSU) rDNA (one copy), E. cuniculi gene DNA cross-ref : AJ005581
Protein overlapping with rRNA (ECU01_1590, CAD25030.1) was converted to a misc_feature.
01_1600, unknown, gene found by Glimmer [Shorter 179 197 99]