Encephalitozoon cuniculi GB-M1 chromosome IX, complete sequence.
Eukaryota; Fungi; Fungi incertae sedis; Microsporidia; Unikaryonidae; Encephalitozoon.
Identification of transcriptional signals in Encephalitozoon cuniculi widespread among Microsporidia phylum: support for accurate structural genome annotation
Genome sequence and gene compaction of the eukaryote parasite Encephalitozoon cuniculi
Transcriptional signals for accurate microsporidian genome annotation, supporting high quality comparative genomics
Submitted (22-DEC-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA
Submitted (30-AUG-2000) Genoscope -Centre National de Sequencage, 2 rue Gaston Cremieux, CP 5706, 91057 EVRY cedex, FRANCE. (E-mail : seqref@genoscope.cns.fr - Web : www.genoscope.cns.fr)
PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to AL590451.\n\nOn Mar 6, 2002 this sequence version replaced NC_003238.1.\nCorresponding author : Equipe de Parasitologie Moleculaire et\nCellulaire, UMR CNRS 6023, Universite Blaise Pascal, 63177 Aubiere\ncedex, France E-mail : Christian.VIVARES@lbp.univ-bpclermont.fr Tel\n: (33) (0)4.73.40.74.57 Fax : (33) (0)4.73.40.74.55 Web :\nhttp://www.protistes.univ-bpclermont.fr/fr/parasito.htm The\nsubmitted sequence encompasses the coding core of the chromosome.\nThe telomeric and subtelomeric sequences are not included in this\nsubmission.\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: INSDC submitter\nAnnotation Status :: Full annotation\nAnnotation Pipeline :: Eukaryotic Annotation Propagation Pipeline\n##Genome-Annotation-Data-END##
09_0030, putative leucine-rich protein, gene found by Glimmer
09_0060, similarity to HYPOTHETICAL INTEGRAL MEMBRANE PROTEIN YJJ1_YEAST, gene found by Glimmer
09_0070, TRANSLATION INITIATION FACTOR IF-2P (BACTERIAL IF2 HOMOLOG), IF2P_METTH, IF2P_yeast, gene found by Glimmer
09_0090, TRANSCRIPTION INITIATION FACTOR TFIID 150kDa SUBUNIT (TAFII-150),T2D2_DROME, gene found by Glimmer
09_0130, ER PROTEIN-TRANSLOCATION COMPLEX, SEC61 HOMOLOG ALPHA SUBUNIT, S61A_RAT, S61A_YEAST, gene found by Glimmer
09_0140, putative 0-SIALOGLYCOPROTEIN ENDOPEPTIDASE (GLYCOPROTEASE), YK18_yeast, gene found by Glimmer
09_0150, PRE-mRNA SPLICING FACTOR (ATP-DEPENDENT RNA HELICASE-LIKE PROTEIN, DEAD box family), PRH1_SCHPO, gene found by Glimmer
09_0170, GTP-BINDING PROTEIN, YPT6_YEAST, gene found by Glimmer
09_0190, unclear, putative leucine repeat-rich protein with some similarity to adenylcyclase, gene found by Glimmer
09_0200, putative leucine repeat-rich protein, gene found by Glimmer
09_0230, similarity to HYPOTHETICAL TRANSMEMBRANE PROTEINS YN66_yeast, YBF3_SCHPO, gene found by Glimmer
09_0240, unknown, gene found by Glimmer [Delay by 180 25 115 0]
09_0260, similarity to HYPOTHETICAL PROTEIN YGX3_ yeast, gene found by Glimmer
09_0290, similarity to NON-MUSCLE ALPHA ACTININ (F-actin cross linking protein), AACN_CHICK, gene found by Glimmer
09_0310, TELOMERASE REVERSE TRANSCRIPTASE, TERT_SCHPO, gene found by Glimmer
proteasome core particle subunit alpha 7
09_0330, PROTEASOME REGULATORY SUBUNIT 8 (COMPONENT C8), PRC8_ACACA, gene found by Glimmer
09_0340, similarity to HYPOTHETICAL ZINC FINGER PROTEIN YKF9_YEAST, gene found by Glimmer
09_0360, similarity to HYPOTHETICAL PROTEINS (UPF0129 family), YO41_THEAC, gene found by Glimmer
09_0395, 60S RIBOSOMAL PROTEIN L39, RL39_DROME
09_0400, mRNA CAPPING ENZYME ALPHA SUBUNIT, MCE1_SCHPO, gene found by Glimmer
5S rRNA, E. cuniculi gene DNA cross-ref : AJ005582
09_0410, RAD26-LIKE DNA REPAIR AND RECOMBINATION PROTEIN, RA26_YEAST, gene found by Glimmer
09_0430, DNA POLYMERASE DELTA CATALYTIC (LARGE) CHAIN, DPOD_CANAL, gene found by Glimmer
09_0440, HISTONE H4, H4_DROME, gene found by Glimmer
09_0450, HISTONE H3, H3_VOLCA, gene found by Glimmer
type 1 protein phosphatase-activating protein SDS22
09_0460, putative leucine repeat-rich protein, gene found by Glimmer
09_0480, T COMPLEX PROTEIN 1 BETA SUBUNIT, TCPB_HUMAN, gene found by Glimmer [Delay by 267 49 234 0]
09_0540, unknown, gene found by Glimmer [Bad Olap 55 131 0]
09_0550, VIP36-LIKE VESICULAR INTEGRAL MEMBRANE PROTEIN, VP36_CANFA, gene found by Glimmer [Shorter 54 131 99] [Shorter 56 116 98]
09_0560, similarity to HYPOTHETICAL INTEGRAL MEMBRANE PROTEIN YA35_SCHPO, gene found by Glimmer [Bad Olap 55 116 1]
09_0630, similarity to HYPOTHETICAL PROTEIN Y494_METJA, gene found by Glimmer
09_0640, PYRUVATE KINASE, KPYK_YARLI, (uncertain position of initiation ATG codon), gene found by Glimmer
09_0650, unknown, gene found by Glimmer [Delay by 393 64 390 2]
09_0670, HISTONE DEACETYLASE, HDA3_CHICK, RPD3_yeast, gene found by Glimmer
09_0680, LA PROTEIN HOMOLOG (LA RIBONUCLEOPROTEIN), LAH1_SCHPO, gene found by Glimmer
09_0710, similarity to HYPOTHETICAL PROTEIN YANI_CAEEL, gene found by Glimmer
09_0720, PROTEASOME BETA-TYPE SUBUNIT (MACROPAIN SUBUNIT PUP1), PRCF_YEAST, gene found by Glimmer
09_0730, similarity to BEM1/BUD5 SUPPRESSOR, BE46_SCHPO, gene found by Glimmer
09_0750, unknown, gene found by Glimmer [Shorter 79 356 99]
09_0760, RIBONUCLEIC TRAFFICKING PROTEIN 1 (5'3'exoribonuclease), DHP1_SCHPO, RAT1_yeast, gene found by Glimmer [Bad Olap 78 356 0], modified ATG by annotation
09_0770, DNA POLYMERASE DELTA SMALL SUBUNIT, DPD2_MOUSE, gene found by Glimmer
09_0820, SEPTIN, CC10_CANAL, CC11_yeast, gene found by Glimmer
09_0830, RIBONUCLEASE PH-LIKE PROTEIN, RNPH_CAEEL, RR41_yeast,gene found by Glimmer
09_0840, CYCLIN C - LIKE PROTEIN (G1/S transition), CG1C_ORYZA, gene found by Glimmer
09_0850, similarity to HYPOTHETICAL PROTEIN YE12_SCHPO, gene found by Glimmer [Shadowed by 89] CDS in reverse orientation removed by annotation
09_0870, similarity to MITOCHONDRIAL TRANSLOCASE TOM70 INVOLVED IN PROTEIN IMPORT, OM70_yeast, gene found by Glimmer
09_0910, DEOXYHYPUSINE SYNTHASE, DHYS_SCHPO, gene found by Glimmer
putative RIBOSOMAL RNA METHYLTRANSFERASE
09_0920, putative RIBOSOMAL RNA METHYLTRANSFERASE, YEK3_SCHPO, gene found by Glimmer
09_0930, weak similarity to DNA repair and recombination RAD22 (fragment), RA22_SCHPO, gene found by Glimmer
09_0940, SYNTAXIN-LIKE PROTEIN (REQUIRED FOR ER TO GOLGI TRANSPORT), SFT2_yeast, gene found by Glimmer
09_0970, putative protein with homeobox domain, gene found by Glimmer
09_0980, SER/THR PROTEIN PHOSPHATASE PP1-1 (CATALYTIC SUBUNIT), PP11_yeast, PPE1_SCHPO, gene found by Glimmer
09_1000, 60S RIBOSOMAL PROTEIN L3, RL3_yeast, gene found by Glimmer [Shadowed by 107]
09_1030, unclear, some similarity to G2/mitotic specific cyclin 1 (fragment), CG21_yeast, gene found by Glimmer
09_1040, PYRUVATE DEHYDROGENASE E1 COMPONENT ALPHA SUBUNIT, ODPA_SCHPO, gene found by Glimmer
09_1050, unknown, gene found by Glimmer [Delay by 87 112 89 0]
09_1070, putative PEPTIDASE, YJ96_CAEEL, gene found by Glimmer
09_1100, unknown, gene found by Glimmer [Shadowed by 118]
09_1190, putative AMINOACID TRANSPORTER, YEU9_yeast, gene found by Glimmer
09_1200, EUKARYOTIC TRANSLATION INITIATION FACTOR 4A (eIF4A), IF4A_yeast, gene found by Glimmer
09_1210, GPI-ANCHOR BIOSYNTHESIS PROTEIN, GPI3_yeast, gene found by Glimmer
09_1220, CALMODULIN, CALM_NEUCR, gene found by Glimmer
09_1250, 40S RIBOSOMAL PROTEIN S3, RS3_yeast, gene found by Glimmer
Short protein (ECU09_1255, SKD10704.1) was converted to a misc_feature.
09_1260, similarity to HYPOTHETICAL PROTEIN YNU7_yeast, gene found by Glimmer
09_1275, 40S RIBOSOMAL PROTEIN S28, RS28_ARATH
09_1300, unknown, gene found by Glimmer [Bad Olap 141 426 0]
09_1310, ZINC FINGER PROTEIN, ESA1_yeast, YD6D_SCHPO, gene found by Glimmer [Shorter 140 426 99]
09_1320, ENDOCHITINASE, CHIP_BETVU, gene found by Glimmer
09_1330, REPLICATION FACTOR C (ACTIVATOR 1) 37kDa SUBUNIT, RFC5_YEAST, gene found by Glimmer
09_1350, 40S RIBOSOMAL PROTEIN S15A (S22 in yeast), RS22_YEAST, gene found by Glimmer
09_1360, DNA REPLICATION LICENSING FACTOR OF THE MCM FAMILY MCM7, MCM7_XENLA, gene found by Glimmer
09_1370, unknown, gene found by Glimmer [Shorter 150 138 99]
09_1375, THIOLTRANSFERASE (GLUTAREDOXIN), GLR2_SCHPO
09_1380, NON SENSE MEDIATED mRNA DECAY PROTEIN 3, YAC3_SCHPO, NMD3_YEAST, gene found by Glimmer
RuvB family ATP-dependent DNA helicase pontin
09_1390, DNA helicase domain, gene found by Glimmer
tRNA found by tRNAscan-SE, tRNA type: Arg, Anticodon: CCT, Score: 73.69
09_1410, unknown, gene found by Glimmer [Bad Olap 157 471 0]
09_1420, U2 snRNP AUXILIARY FACTOR SMALL (38kDa) SUBUNIT (SPLICING FACTOR U2AF), U2AG_DROME, gene found by Glimmer [Shorter 156 471 99]
09_1440, PHOSPHOLIPID-TRANSPORTING ATPASE IIA, AT2A_MOUSE, gene found by Glimmer
09_1450, RAS-RELATED PROTEIN GTP-BINDING PROTEIN (RAB 10), YPT2_SCHPO, gene found by Glimmer
09_1480, unknown, gene found by Glimmer [Delay by 279 164 161 0]
09_1490, PROTEIN PHOSPHATASE PP2-A REGULATORY SUBUNIT A, 2AAA_DROME, gene found by Glimmer
09_1500, similarity to HYPOTHETICAL PROTEIN YAZ3_SCHPO, gene found by Glimmer
09_1520, similarity to HYPOTHETICAL PROTEIN Y708_METJA, gene found by Glimmer
09_1560, PROTEIN DISULFIDE ISOMERASE, PDI_MEDSA, gene found by Glimmer
09_1590, similarity to HYPOTHETICAL TRANSMEMBRANE PROTEIN YNO3_YEAST, gene found by Glimmer
09_1600, NOP5-LIKE NUCLEOLAR PROTEIN, NOP5_yeast, gene found by Glimmer
09_1610, similarity to PROTEIN REQUIRED FOR NORMAL GROWTH (SUA5/YRDC/YC10/YWLC FAMILY), YWLC_BAZCSU, SUA5_yeast, gene found by Glimmer
09_1620, unclear, some similarity to DNA repair protein RAD2 (fragment), RAD2_yeast, gene found by Glimmer
09_1640, putative ATP-DEPENDENT RNA HELICASE (DEAD box family), ST13_SCHPO, gene found by Glimmer
09_1650, similarity to HYPOTHETICAL GTP-BINDING PROTEIN YN8U_yeast, gene found by Glimmer
09_1680, ASPARAGINYL tRNA SYNTHETASE, SYNC_YEAST, gene found by Glimmer
09_1690, putative COIL-COILED (MYOSIN-LIKE) PROTEIN, YAV4_SCHPO, gene found by Glimmer
09_1700, similar to HYPOTHETICAL PROTEIN (88.8kD) YNV2_yeast that is similar to CYPRO4, gene found by Glimmer
09_1710, putative oxidoreductase, gene found by Glimmer
09_1740, INVOLVED IN UBIQUITIN-DEPENDENT PROTEOLYSIS, DOA1_YEAST, gene found by Glimmer
09_1750, similarity to ENHANCER OF ZESTE PROTEIN, EZ_DROME, gene found by Glimmer
09_1770, GUANINE NUCLEOTIDE-BINDING PROTEIN BETA SUBUNIT, GBLP_SCHPO, gene found by Glimmer
09_1780, MEVALONATE KINASE, KIME_yeast, KIME_METJA, gene found by Glimmer
tRNA found by tRNAscan-SE, tRNA type: Glu, Anticodon:: TTC, Score: 62.04
09_1790, VACUOLAR ATP SYNTHASE 95kDa SUBUNIT, VPH1_yeast, gene found by Glimmer
09_1800, DNA REPLICATION HELICASE, DNA2_yeast, gene found by Glimmer
09_1805, U6 snRNA-ASSOCIATED RIBONUCLEOPROTEIN (U6 snRNP of the Sm family), SNP3_YEAST
proteasome regulatory particle base subunit RPT6
09_1840, 26S PROTEASOME REGULATORY SUBUNIT 8, PRS8_SCHPO, gene found by Glimmer
tRNA found by tRNAscan-SE, tRNA type: His, Anticodon: GTG, Score: 73.00
09_1850, PEREGRIN-LIKE TRANSCRIPTIONAL REGULATOR, BR14_HUMAN, gene found by Glimmer
09_1870, UNDECAPRENYL PYROPHOSPHATE SYNTHETASE (DIHYDRODOLICHYL DIPHOSPHATE SYNTHETASE), RER2_yeast, gene found by Glimmer
09_1890, GLOBAL TRANSCRIPTIONAL ACTIVATOR (SNF2/RAD54 family), SN21_HUMAN, gene found by Glimmer
09_1910, CHROMOSOME SEGREGATION PROTEIN OF THE SMC FAMILY, P115_MYCPN, gene found by Glimmer
09_1950, similarity to MEMBRANE PROTEIN DP1 (POLYPSIS LOCUS PROTEIN 1), DP1_MOUSE, gene found by Glimmer
09_1960, BELONGS TO THE CYTIDINE AND DEOXYCYTIDYLATE DEAMINASE FAMILY, TAD2_yeast, gene found by Glimmer
09_1970, NON MUSCLE MYOSIN HEAVY CHAIN (isoform 2), MYS2_yeast, gene found by Glimmer