Encephalitozoon cuniculi GB-M1 chromosome X, complete sequence.
Eukaryota; Fungi; Fungi incertae sedis; Microsporidia; Unikaryonidae; Encephalitozoon.
Identification of transcriptional signals in Encephalitozoon cuniculi widespread among Microsporidia phylum: support for accurate structural genome annotation
Genome sequence and gene compaction of the eukaryote parasite Encephalitozoon cuniculi
Transcriptional signals for accurate microsporidian genome annotation, supporting high quality comparative genomics
Submitted (22-DEC-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA
Submitted (30-AUG-2000) Genoscope -Centre National de Sequencage, 2 rue Gaston Cremieux, CP 5706, 91057 EVRY cedex, FRANCE. (E-mail : seqref@genoscope.cns.fr - Web : www.genoscope.cns.fr)
PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to AL590449.\nCorresponding author : Equipe de Parasitologie Moleculaire et\nCellulaire, UMR CNRS 6023, Universite Blaise Pascal, 63177 Aubiere\ncedex, France E-mail : Christian.VIVARES@lbp.univ-bpclermont.fr Tel\n: (33) (0)4.73.40.74.57 Fax : (33) (0)4.73.40.74.55 Web :\nhttp://www.protistes.univ-bpclermont.fr/fr/parasito.htm The\nsubmitted sequence encompasses the coding core of the chromosome.\nThe telomeric and subtelomeric sequences are not included in this\nsubmission.\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: INSDC submitter\nAnnotation Status :: Full annotation\nAnnotation Pipeline :: Eukaryotic Annotation Propagation Pipeline\n##Genome-Annotation-Data-END##
10_0070, weak similarity to 60S RIBOSOMAL PROTEIN L35, RL35_SCHPO, gene found by Glimmer
10_0090, ADP RIBOSYLATION FACTOR 1, ARF1_yeast, gene found by Glimmer [Shorter 13 563 99]
10_0120, CELL CYCLE PROTEIN KINASE OF THE CDC7 SUBFAMILY, HSK1_SCHPO, CC7_YEAST, gene found by Glimmer
10_0130, 26S PROTEASOME REGULATORY SUBUNIT 6, PRS6_RAT, gene found by Glimmer
H(+)-transporting V1 sector ATPase subunit D
10_0140, VACUOLAR ATP SYNTHASE SUBUNIT D, VATD_SCHPO, gene found by Glimmer
10_0150, Zinc finger domain, gene found by Glimmer
tRNA found by tRNAscan-SE, tRNA type: Asn, Anticodon: GTT, Score: 75.50
10_0160, 60S RIBOSOMAL PROTEIN L23A (L2B) (L25 in yeast), RL2B_FRIAG, gene found by Glimmer
10_0170, SIGNAL RECOGNITION PARTICLE (SRP) RECEPTOR ALPHA SUBUNIT, SRPR_HUMAN, gene found by Glimmer
10_0180, RIBOSE 5-PHOSPHATE ISOMERASE, RPIA_METTH, gene found by Glimmer
10_0190, similarity to HYPOTHETICAL PROTEIN YD95_SCHPO, gene found by Glimmer
tRNA found by tRNAscan-SE, tRNA type: Val, Anticodon: CAC, Score: 69.89
DNA-directed RNA polymerase III subunit C34
10_0210, DNA-DIRECTED RNA POLYMERASE III 34kDa SUBUNIT, RPC6_yeast, gene found by Glimmer
translation initiation factor eIF3 subunit i
10_0220, TRANSLATION INITIATION FACTOR IF3 SUBUNIT 2 (eIF3 beta subunit), IF32_HUMAN, gene found by Glimmer
10_0240, T COMPLEX PROTEIN 1 GAMMA SUBUNIT, TCPG_yeast, gene found by Glimmer
10_0250, DNA-DIRECTED RNA POLYMERASE II SECOND LARGEST SUBUNIT, RPB2_SCHPO, gene found by Glimmer
10_0260, CCAAT BINDING TRANSCRIPTION FACTOR SUBUNIT A, CBFA_MAIZE, gene found by Glimmer
10_0270, BELONGS TO THE RNASE PH (EXOSOME) FAMILY, YG2N_YEAST, gene found by Glimmer
10_0280, similarity to HYPOTHETICAL PROTEINS YDK9_SCHPO and YNN2_YEAST, gene found by Glimmer
10_0290, U1 SMALL NUCLEAR RIBONUCLEOPROTEIN (U1snRNP), RU1C_MOUSE, gene found by Glimmer
tRNA found by tRNAscan-SE, tRNA type: Ser, Anticodon: GCT, Score: 64.16
10_0300, STEROL O-ACYLTRANSFERASE (STEROL ESTER SYNTHASE), AREH_SCHPO, gene found by Glimmer
10_0310, 1-ACYL-SN-GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE (1-AGPAT) (LYSOPHOSPHATIDIC ACID ACYLTRANSFERASE), PLSC_YEAST, gene found by Glimmer
10_0320, similarity to KINESIN-LIKE PROTEIN A, KATA_ARATH, gene found by Glimmer
10_0330, putative zinc finger protein (C2H2 type), gene found by Glimmer
10_0340, INORGANIC PYROPHOSPHATASE, IPYR_DROME, gene found by Glimmer
10_0350, RAS-LIKE GTP-BINDING PROTEIN OF THE RHO1 FAMILY, RHO1_DROME, gene found by Glimmer
10_0360, ACTIN-BINDING PROTEIN OF THE ADF FAMILY (ACTIN DEPOLYMERIZING FACTOR), ADF_BRANA, gene found by Glimmer
10_0380, mRNA CAPPING ENZYME, mRNA GUANINE-N7-METHYLTRANSFERASE, ABD1_YEAST, gene found by Glimmer
10_0400, 40S RIBOSOMAL PROTEIN S23, RS23_BRUMA, gene found by Glimmer
10_0410, 26S PROTEASOME REGULATORY SUBUNIT S5A, PSD4_ARATH, gene found by Glimmer
10_0420, similarity to ADP/ATP CARRIER PROTEIN 4 (ADP/ATP TRANSLOCASE), TLCD_RICPR, gene found by Glimmer
10_0440, putative ATP-DEPENDENT RNA HELICASE (involved in 18S rRNA maturation), YN21_CAEEL, gene found by Glimmer
tRNA found by tRNAscan-SE, tRNA type: Pro, Anticodon: CGG, Score: 57.02
10_0480, BIS 5'-ADENOSYL TRIPHOSPHATASE OF THE HIT FAMILY (DIADENOSINE TETRAPHOSPHATASE), FHIT_HUMAN, gene found by Glimmer
10_0510, 3-HYDROXY-3-METHYLGLUTARYL-CoA SYNTHASE 2, HMC2_BLAGE, HMCS_YEAST, gene found by Glimmer
10_0520, similarity to ATP/ADP CARRIER PROTEIN 1 (ADP/ATP TRANSLOCASE), TLCA_RICPR, TLC1_CHLPN, gene found by Glimmer
10_0530, URACYL DNA GLYCOSYLASE, UNG_HUMAN, gene found by Glimmer
10_0540, similarity to ADP/ATP CARRIER PROTEIN 1 (ADP/ATP TRANSLOCASE), TLCA_RICPR, gene found by Glimmer
10_0550, PROTEASOME ALPHA SUBUNIT C6, PRC6_HUMAN et PRC6_YEAST, gene found by Glimmer [Shorter 64 492 99]
10_0560, putative OXIDOREDUCTASE OF THE SHORT CHAIN DEHYDROGENASE/REDUCTASE FAMILY, DLTE_BACSU, gene found by Glimmer [Bad Olap 63 492 0]
10_0570, RIBOSOMAL PROTEIN S6 KINASE, KS6_HUMAN, gene found by Glimmer
10_0590, PHOSPHATIDYL INOSITOL-3-KINASE (C-TERMINAL REGION), PI3K_ARATH, gene found by Glimmer
10_0600, DNA REPLICATION FACTOR A PROTEIN 1, RFA1_SCHPO, RFA1_YEAST, gene found by Glimmer
10_0620, NONSENSE-MEDIATED mRNA DECAY PROTEIN 5, NMD5_YEAST, gene found by Glimmer
10_0630, T COMPLEX PROTEIN 1 ETA SUBUNIT, TCPH_SCHPO, gene found by Glimmer
10_0640, DYNEIN HEAVY CHAIN, DHYC_YEAST, gene found by Glimmer
10_0650, unknown, gene found by Glimmer [Delay by 129 74 112 0]
NuA4 histone acetyltransferase complex catalytic subunit ESA1
10_0660, HIV1-TAT INTERACTING PROTEIN 60KDa HOMOLOG (SAS/MOZ FAMILY), ESA1_YEAST, gene found by Glimmer
10_0670, similarity to HYPOTHETICAL PROTEIN (UPF0113 family):Y058_ARCFU, gene found by Glimmer
10_0680, PRE-mRNA SPLICING FACTOR, HELICASE PRP43 HOMOLOG (DEAD box family, DEAH subfamily), PR43_YEAST, gene found by Glimmer
10_0690, ATP-DEPENDENT RNA HELICASE INVOLVED IN 25S rRNA MATURATION (DEAD box family), HAS1_YEAST, gene found by Glimmer
10_0700, TRANSLATION INITIATION FACTOR EIF-2B EPSILON SUBUNIT, E2B2_YEAST, gene found by Glimmer
10_0710, DNA MISMATCH REPAIR PROTEIN OF THE MUTS FAMILY, MSH6_YEAST, gene found by Glimmer
10_0720, ANKYRIN REPEAT-CONTAINING PROTEIN, YA2A_SCHPO, gene found by Glimmer
10_0750, METHIONINE AMINOPEPTIDASE 2, AMP2_YEAST, gene found by Glimmer
10_0760, TRANSCRIPTION INITIATION FACTOR TFIID 111kDa SUBUNIT, T111_SCHPO, gene found by Glimmer
10_0780i, DNA REPLICATION FACTOR C (ACTIVATOR 1) 38kDa SUBUNIT, AC13_HUMAN, gene found by Glimmer [Bad Olap 89 126 0], modified ATG by annotation
10_0790, unknown, gene found by Glimmer [Shorter 88 126 99]
10_0800, similarity to HYPOTHETICAL PROTEINS YD29_SCHPO and YDG1_YEAST, gene found by Glimmer
10_0810, similarity to HYPOTHETICAL PROTEIN YBY3_SCHPO, gene found by Glimmer
10_0820, FIBRILLARIN (34kDa NUCLEOLAR PROTEIN), FBRL_YEAST, gene found by Glimmer
10_0830, NUCLEAR PROTEIN OF THE GLUTATHIONE-S-TRANSFERASE FAMILY, MK16_YEAST, gene found by Glimmer
10_0840, similarity to HYPOTHETICAL PROTEIN YP68_CAEEL, gene found by Glimmer
10_0870, MITOCHONDRIAL GLYCEROL-3-PHOSPHATE DEHYDROGENASE, GPDM_CAEEL, gene found by Glimmer
10_0890, LONG CHAIN FATTY ACID CoA LIGASE, LCFX_RAT, gene found by Glimmer
10_0900, similarity to HYPOTHETICAL PROTEINS Y162_METJA and YC36_METJA, gene found by Glimmer
10_0910, LONG CHAIN FATTY ACID CoA LIGASE, LCFX_RAT, gene found by Glimmer
10_0920, RIBONUCLEOSIDE DIPHOSPHATE REDUCTASE, LARGE CHAIN, RIR1_CAEEL, gene found by Glimmer
10_0940, UBIQUITIN-CONJUGATING ENZYME E2 SUBUNIT, UBC6_HUMAN, gene found by Glimmer
10_0950, similarity to HYPOTHETICAL PROTEIN (UPF0080 family) YDI3_yeast, gene found by Glimmer
10_0960, Similarity to HYPOTHETICAL PROTEINS (UPF0101 family) YCD7_HUMAN, ADO4_HUMAN, YG19_METJA, gene found by Glimmer
10_0990, 60S RIBOSOMAL PROTEIN L27A (L28 in yeast), RL2A_ENCCU, E. cuniculi gene DNA cross-ref : AF054829, gene found by Glimmer
10_1000, KINESIN-RELATED PROTEIN, KIP2_YEAST, gene found by Glimmer
H(+)-transporting V1 sector ATPase subunit B
10_1040, VACUOLAR ATP SYNTHASE SUBUNIT B, VATB_CANTR, gene found by Glimmer
10_1050, ATP-binding domain, gene found by Glimmer
10_1060, PHOSPHOGLYCERATE MUTASE, PMGI_ANTSP, gene found by Glimmer
10_1080, DNA POLYMERASE ALPHA SUBUNIT B, DPO2_RAT, gene found by Glimmer
10_1090, DNA-binding domain, gene found by Glimmer
10_1100, DNAJ-LIKE PROTEIN, DNAJ_CHLTR, gene found by Glimmer
10_1110, POLYADENYLATE-BINDING PROTEIN 2 (PABP2), PABP_SCHPO, gene found by Glimmer
tRNA found by tRNAscan-SE, tRNA type: Ala, Anticodon: CGC, Score: 60.83
10_1120, TRANSCRIPTION INITIATION FACTOR TFIID 70kDa SUBUNIT (TAFII-70), T2D5_YEAST, gene found by Glimmer
10_1130, ORIGIN RECOGNITION COMPLEX SUBUNIT 2, ORC2_ARATH, gene found by Glimmer
Arf family guanine nucleotide exchange factor
10_1140, ARF GUANINE NUCLEOTIDE EXCHANGE FACTOR (contains a SEC7 domain), GEA1_YEAST, gene found by Glimmer
10_1170, DNA REPAIR PROTEIN (RAD14/XPA FAMILY), XPA_XENLA, RA14_YEAST, gene found by Glimmer
10_1180, UBIQUITIN FUSION DEGRADATION PROTEIN 1 HOMOLOG, UDF1_YEAST, gene found by Glimmer
10_1200i, CASEIN KINASE II BETA 2 SUBUNIT (BETA PRIME), SSL_DROME, gene found by Glimmer, modified ATG by annotation
10_1210, DNA POLYMERASE EPSILON, CATALYTIC SUBUNIT A (DNA POLYMERASE II SUBUNIT A), DPOE_SCHPO, gene found by Glimmer
10_1220, unknown, gene found by Glimmer [Delay by 87 140 101 2]
10_1230, ABC TRANSPORTER, YETI_SCHPO, ABC7_HUMAN, gene found by Glimmer
10_1240, IMPORTIN BETA 1 SUBUNIT (KARYOPHERIN), IMB1_YEAST, gene found by Glimmer
10_1260, putative 1-ACYL-SN-GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE, YBP2_YEAST, gene found by Glimmer
Dullard-like phosphatase domain-containing protein
10_1270, similarity to HYPOTHETICAL PROTEINS YA22_SCHPO, YHG4_YEAST and Q22647 ARATH, gene found by Glimmer
10_1280, SER/THR PROTEIN PHOSPHATASE PP4 (PROTEIN PHOSPHATASE X, PP-X), PPP4_HUMAN, PPX1_PARTE, P2A4_YEAST, gene found by Glimmer
iron-sulfur cluster assembly protein CIA2
10_1290, similarity to HYPOTHETICAL PROTEIN YHS2_YEAST, gene found by Glimmer
10_1300, 60S RIBOSOMAL PROTEIN L44 (L42 in yeast), RL44_ARATH, gene found by Glimmer
10_1310i, UBIQUITIN CONJUGATING ENZYME E2-17kDa, UBC2_NEUCR, gene found by Glimmer, modified ATG by annotation
10_1320, similarity to THE ATPase COMPONENT OF THE TWO-SUBUNIT CHROMATIN REMODELING FACTOR, ISWI_DROME, gene found by Glimmer
nucleotide excision repair endonuclease NEF1 subunit RAD10
10_1330, ERCC1-LIKE DNA EXCISION REPAIR PROTEIN, ERC1_MOUSE, gene found by Glimmer
10_1340, similarity to HYPOTHETICAL PROTEINS YAZE_SCHPO and YHM9_YEAST, gene found by Glimmer
10_1350, similarity to HYPOTHETICAL PROTEIN YO47_METJA, gene found by Glimmer
10_1370, putative INOSITOL POLYPHOSPHATE-5-PHOSPHATASE SIMILAR TO YEAST INP54, gene found by Glimmer
10_1380, UBIQUITIN LIGASE, RSP5_YEAST, gene found by Glimmer
proteasome regulatory particle base subunit RPT5
10_1420, 26S PROTEASOME REGULATORY SUBUNIT 6A (TAT-BINDING PROTEIN 1), PRSA_ORYSA, gene found by Glimmer
10_1430, TRANSCRIPTIONAL ACTIVATOR, GCN5_yeast, gene found by Glimmer
10_1440, similarity to HYPOTHETICAL INTEGRAL MEMBRANE PROTEIN YSX3_CAEEL, gene found by Glimmer
10_1450, PROTEASOME B-TYPE SUBUNIT DELTA CHAIN, PRCD_yeast, gene found by Glimmer
10_1460, GLUTAMINYL tRNA SYNTHETASE, SYQ_LUPLU, gene found by Glimmer
10_1470, homeobox domain, gene found by Glimmer
10_1480, TRANSCRIPTION FACTOR OF THE TALE/PBX FAMILY (HOMEOBOX PROTEINS), HM20_CAEEL, gene found by Glimmer
10_1500, putative protein with Ca-binding domain, gene found by Glimmer
10_1510, weak similarity to MEVALONATE KINASE, KIME_PYRHO, gene found by Glimmer
10_1520, ABC TRANSPORTER (WHITE PROTEIN), WHIT_HUMAN, gene found by Glimmer
10_1540, UBIQUITIN CONJUGATING ENZYME E2-20K, UBCB_yeast, gene found by Glimmer
10_1550, unknown, gene found by Glimmer [Shorter 176 245 99]
10_1560, unknown, gene found by Glimmer [Bad Olap 175 245 0]
10_1570i, 40S RIBOSOMAL PROTEIN S24, RS24_FUGRU, gene found by Glimmer, modified ATG by annotation
10_1575, 40S RIBOSOMAL PROTEIN S30, RS30_yeast
10_1580, SMALL NUCLEAR RIBONUCLEOPROTEIN D2, SMD2_yeast, gene found by Glimmer
10_1590, CHOLINE PHOSPHATE CYTIDYLYLTRANSFERASE, CTPT_MOUSE, gene found by Glimmer
10_1600, similarity to HYPOTHETICAL PROTEINS YA53_SCHPO and YGT3_yeast, gene found by Glimmer
10_1640, INVOLVED IN mRNA DECAY CONTROL (DNA2/NAM7 HELICASE FAMILY), NAM7_yeast, YAC6_SCHPO, gene found by Glimmer
10_1660, SPORE WALL PROTEIN 1, Encephalitozoon cuniculi, SWP1_ENCCU, E. cuniculi gene DNA cross-ref : AJ133745, gene found by Glimmer [Bad Olap 187 400 14], CDS in reverse orientation removed by annotation
10_1680, ATP-DEPENDENT RNA HELICASE (DEAD box family), HAS1_yeast, gene found by Glimmer
10_1690, ENOLASE, ENO_FASHE, gene found by Glimmer
10_1700i, DYNAMIN-LIKE VACUOLAR PROTEIN SORTING PROTEIN, VPS1_yeast, DNM1_yeast, YB68_SCHPO, gene found by Glimmer, modified ATG by annotation
10_1710, unknown, gene found by Glimmer [Shorter 192 182 99]
10_1720, 3-HYDROXY-3-METHYLGLUTARYL CoA REDUCTASE 1, HMD1_DICDI, gene found by Glimmer [Bad Olap 191 182 0]
10_1740, putative protein with calponin domain, gene found by Glimmer
10_1760, PEPTIDYL-PROLYL CIS-TRANS ISOMERASE (CYCLOPHILIN), CYPH_CATRO, gene found by Glimmer [Shorter 197 149 99]
10_1770i, CYTOSOL AMINOPEPTIDASE (X-LEU/X-PRO), AMPA_RICPR, YA55_SCHPO, gene found by Glimmer [Bad Olap 196 149 0], modified ATG by annotation
10_1790, GLYCYL-tRNA SYNTHETASE, SYG_HUMAN, gene found by Glimmer
10_1820, unknown, gene found by Glimmer [Bad Olap 203 242 0]
10_1830, unknown, gene found by Glimmer [Shorter 202 242 99]